Clone BS14404 Report

Search the DGRC for BS14404

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG11247-RA
Protein status:BS14404.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14404.3prime Sequence

871 bp (814 high quality bases) assembled on 2006-10-13

> BS14404.3prime
ATGGTCTAGAAAGCTTCTACTTCTGTTTCATATACATGGTAGCAATTTTC
TCAAGAATCGTGTCTATAGACAACAATTCGTCGCTGAATTTCTGCATAGT
GGGGGCTGGCACAATCCACTTAAGAAATTCCTCCACATTTAGCCGGAGTC
TGGCCAATGGGGTCATCGTGGCGTCGTCATGGGATTGTCGCTGAGCCAGC
TTCAAGGATGCAATGATAACGTTATCGATTAGACGCTTCTCGTAGCCCAA
CTGGCGCAGCTTTTGAGCGGAGCTAATTTTCTTCAGTACCACTGCCATGT
TAAATCTTAAGACAGAGAGAATTTGCGCATCTTCAGACTGATTGCCACTG
GGTTTGTCCCCGTCAACTGGACACTTGGCGCAGTGCTCAACATGCGACTG
CAGCTCCACCTTGATCTTAAAGAAATCGTGGCAGCCTTCGCACATGTAGG
GCTTTTGCTGTTTGTGTATCTTCTTCATGTGGTTCTTTAGGTGCGCCAGC
TGAGAAAAGGCTACTTCGTCTTCGCACAGCTGGCAGCGAAAGGGTTTTTC
CCCCGTATGCTTTCGGATGTGCAGTTTTAGTACGCTTGAATGGGCAAAGG
TCTGGTGGCAGATCCTACACTGATAGGGGCGCTCTCCCGTGTGCATTCGC
ATATGGACATTGTACTGGCTTTTCTGGGTGAAATATGTGTTGCACACCTC
GCAGACGTGGGTCTTAACAGCGGTGTGCCTCTGCATGTGAGTGGCCAAAT
CCTCGTCCGGCTCGATCATCTTATGGCATATCTCGCACTCAAATTGCGTC
AGCTTGTGGTGCTCCTGGTTTATGTGCGCTCGCAGGGCCAGCTCGTTGGC
GAATTGGGTCTCACAGATGCT

BS14404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-PB 1569 CG11247-RB 715..1569 871..17 4250 99.8 Minus
CG11247-PA 1569 CG11247-RA 715..1569 871..17 4250 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-RD 2518 CG11247-RD 1091..1947 871..15 4270 99.9 Minus
CG11247-RC 2564 CG11247-RC 1137..1993 871..15 4270 99.9 Minus
CG11247-RA 2803 CG11247-RA 1376..2232 871..15 4270 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21724897..21725496 15..614 3000 100 Plus
3L 28110227 3L 21725555..21725812 614..871 1275 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 17:42:41 has no hits.

BS14404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:37 Download gff for BS14404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-PA 715..1569 17..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:43 Download gff for BS14404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-RA 1376..2232 15..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:42 Download gff for BS14404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-RA 1376..2232 15..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:42 Download gff for BS14404.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21724897..21725495 15..613 100 <- Plus
3L 21725555..21725812 614..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:43 Download gff for BS14404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21717997..21718595 15..613 100 <- Plus
arm_3L 21718655..21718912 614..871 99   Plus

BS14404.5prime Sequence

846 bp (844 high quality bases) assembled on 2006-10-13

> BS14404.5prime
GAAGTTATCAGTCGACATGGTACGCAGCCGTCGTAGTGTGTCCAAGGAGG
ATGCCGTCTCTCTGCTCACAGACAGCGGCATATCGCTGTCTTCGCCGCCG
GCGGCGAGGGAATCCTCACCAGGCCCTACGCTTGCGATCAAAAGGAGGAA
GAGCAGCTTGGCAAGTCTGCGCGATGCTTGTGTGGACGAGGAGGAGGACG
ACGGCGGAGAGCAGGACTCAAAGGATGATGATTACGTGCAACCGCAGCTT
AAGAAGTCTGCCCGAAAGGGCGAACCGGTGAAACGCAAGCACCATGTCTG
CAGTCAATGCTCCAAAGAGTTCGGTGGCAAGACGGATCTGCAGCGCCACA
TGCTTATCCACTCGGACGAACGACCGCACAAGTGCAAGGATTGTGGCAAG
AGCTACCGCCAGGCGGTCAACCTGAAAAATCATATCACCACCGCCCACGA
GCATCGGAAACAGTTCGTTTGTTCCCAGTGCCCAAAATCATTCGCCCTCA
AGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTAT
CCTTGCGACCTCTGCGACAAAAAATTCGCCCGAGGAGGTCAACTGCAACA
GCACATGGTTTCTCACCACAAGACGAGTATCCAGCAGTTCAACTGCACTA
AGTGCTCGGCCAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAG
CGACACGAGCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAACCAATT
CGCCAACGAGCTGGCCCTGCGAGCGCACATAAACCAGGAGCACCACAAGC
TGACGCAATTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGA

BS14404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-PB 1569 CG11247-RB 1..830 17..846 4150 100 Plus
CG11247-PA 1569 CG11247-RA 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-RC 2564 CG11247-RC 423..1252 17..846 4150 100 Plus
CG11247-RA 2803 CG11247-RA 662..1491 17..846 4150 100 Plus
CG11247-RB 2728 CG11247-RB 587..1416 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21726163..21726738 592..17 2880 100 Minus
3L 28110227 3L 21725697..21725950 846..593 1270 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:57:28 has no hits.

BS14404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:37 Download gff for BS14404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-PA 1..829 17..845 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:41 Download gff for BS14404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-RB 580..1415 9..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:35 Download gff for BS14404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11247-RB 580..1415 9..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:35 Download gff for BS14404.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21725698..21725950 593..845 100 <- Minus
3L 21726163..21726740 17..592 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:41 Download gff for BS14404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21718798..21719050 593..845 100 <- Minus
arm_3L 21719263..21719840 17..592 99 -> Minus

BS14404.complete Sequence

1601 bp assembled on 2006-11-01

GenBank Submission: FJ637650

> BS14404.complete
GAAGTTATCAGTCGACATGGTACGCAGCCGTCGTAGTGTGTCCAAGGAGG
ATGCCGTCTCTCTGCTCACAGACAGCGGCATATCGCTGTCTTCGCCGCCG
GCGGCGAGGGAATCCTCACCAGGCCCTACGCTTGCGATCAAAAGGAGGAA
GAGCAGCTTGGCAAGTCTGCGCGATGCTTGTGTGGACGAGGAGGAGGACG
ACGGCGGAGAGCAGGACTCAAAGGATGATGATTACGTGCAACCGCAGCTT
AAGAAGTCTGCCCGAAAGGGCGAACCGGTGAAACGCAAGCACCATGTCTG
CAGTCAATGCTCCAAAGAGTTCGGTGGCAAGACGGATCTGCAGCGCCACA
TGCTTATCCACTCGGACGAACGACCGCACAAGTGCAAGGATTGTGGCAAG
AGCTACCGCCAGGCGGTCAACCTGAAAAATCATATCACCACCGCCCACGA
GCATCGGAAACAGTTCGTTTGTTCCCAGTGCCCAAAATCATTCGCCCTCA
AGGAGCGCCTGCGGCTCCACATGCGCCTCCACTCTGGCGAGAAGCCCTAT
CCTTGCGACCTCTGCGACAAAAAATTCGCCCGAGGAGGTCAACTGCAACA
GCACATGGTTTCTCACCACAAGACGAGTATCCAGCAGTTCAACTGCACTA
AGTGCTCGGCCAGCTTCTCAACCAACGCCAATTTACGGGTGCACATGGAG
CGACACGAGCAGGGCATGGAGCACCGGTGCAGCATCTGTGAGAACCAATT
CGCCAACGAGCTGGCCCTGCGAGCGCACATAAACCAGGAGCACCACAAGC
TGACGCAATTTGAGTGCGAGATATGCCATAAGATGATCGAGCCGGACGAG
GATTTGGCCACTCACATGCAGAGGCACACCGCTGTTAAGACCCACGTCTG
CGAGGTGTGCAACACATATTTCACCCAGAAAAGCCAGTACAATGTCCATA
TGCGAATGCACACGGGAGAGCGCCCCTATCAGTGTAGGATCTGCCACCAG
ACCTTTGCCCATTCAAGCGTACTAAAACTGCACATCCGAAAGCATACGGG
GGAAAAACCCTTTCGCTGCCAGCTGTGCGAAGACGAAGTAGCCTTTTCTC
AGCTGGCGCACCTAAAGAACCACATGAAGAAGATACACAAACAGCAAAAG
CCCTACATGTGCGAAGGCTGCCACGATTTCTTTAAGATCAAGGTGGAGCT
GCAGTCGCATGTTGAGCACTGCGCCAAGTGTCCAGTTGACGGGGACAAAC
CCAGTGGCAATCAGTCTGAAGATGCGCAAATTCTCTCTGTCTTAAGATTT
AACATGGCAGTGGTACTGAAGAAAATTAGCTCCGCTCAAAAGCTGCGCCA
GTTGGGCTACGAGAAGCGTCTAATCGATAACGTTATCATTGCATCCTTGA
AGCTGGCTCAGCGACAATCCCATGACGACGCCACGATGACCCCATTGGCC
AGACTCCGGCTAAATGTGGAGGAATTTCTTAAGTGGATTGTGCCAGCCCC
CACTATGCAGAAATTCAGCGACGAATTGTTGTCTATAGACACGATTCTTG
AGAAAATTGCTACCATGTATATGAAACAGAAGTAGAAGCTTTCTAGACCA
T

BS14404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-RC 1569 CG11247-PC 1..1569 17..1585 7845 100 Plus
CG11247-RA 1569 CG11247-PA 1..1569 17..1585 7845 100 Plus
CG11247-RB 1569 CG11247-PB 1..1569 17..1585 7845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-RC 2564 CG11247-RC 423..1993 17..1587 7855 100 Plus
CG11247-RA 2803 CG11247-RA 662..2232 17..1587 7855 100 Plus
CG11247-RB 2728 CG11247-RB 587..2157 17..1587 7855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21724897..21725496 1587..988 3000 100 Minus
3L 28110227 3L 21726163..21726738 592..17 2880 100 Minus
3L 28110227 3L 21725555..21725950 988..593 1980 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:23:28 has no hits.

BS14404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:07 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11247-RC 1..1569 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:19 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11247-RC 413..1990 9..1587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:37:53 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11247-RB 587..2155 17..1585 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:07 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11247-RC 413..1990 9..1587 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:24 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
CG11247-RB 587..2155 17..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:24 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21724899..21725495 989..1585 100 <- Minus
3L 21725555..21725950 593..988 100 <- Minus
3L 21726163..21726738 17..592 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:37:53 Download gff for BS14404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21717999..21718595 989..1585 100 <- Minus
arm_3L 21718655..21719050 593..988 100 <- Minus
arm_3L 21719263..21719838 17..592 100   Minus

BS14404.pep Sequence

Translation from 16 to 1584

> BS14404.pep
MVRSRRSVSKEDAVSLLTDSGISLSSPPAARESSPGPTLAIKRRKSSLAS
LRDACVDEEEDDGGEQDSKDDDYVQPQLKKSARKGEPVKRKHHVCSQCSK
EFGGKTDLQRHMLIHSDERPHKCKDCGKSYRQAVNLKNHITTAHEHRKQF
VCSQCPKSFALKERLRLHMRLHSGEKPYPCDLCDKKFARGGQLQQHMVSH
HKTSIQQFNCTKCSASFSTNANLRVHMERHEQGMEHRCSICENQFANELA
LRAHINQEHHKLTQFECEICHKMIEPDEDLATHMQRHTAVKTHVCEVCNT
YFTQKSQYNVHMRMHTGERPYQCRICHQTFAHSSVLKLHIRKHTGEKPFR
CQLCEDEVAFSQLAHLKNHMKKIHKQQKPYMCEGCHDFFKIKVELQSHVE
HCAKCPVDGDKPSGNQSEDAQILSVLRFNMAVVLKKISSAQKLRQLGYEK
RLIDNVIIASLKLAQRQSHDDATMTPLARLRLNVEEFLKWIVPAPTMQKF
SDELLSIDTILEKIATMYMKQK*

BS14404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11247-PC 522 CG11247-PC 1..522 1..522 2794 100 Plus
CG11247-PA 522 CG11247-PA 1..522 1..522 2794 100 Plus
CG11247-PB 522 CG11247-PB 1..522 1..522 2794 100 Plus
CG11247-PD 326 CG11247-PD 1..326 197..522 1749 100 Plus
CG5245-PA 501 CG5245-PA 195..491 95..399 539 34.1 Plus
CG11247-PD 326 CG11247-PD 10..246 148..378 295 28.3 Plus
CG11247-PD 326 CG11247-PD 14..204 95..285 278 29 Plus
CG11247-PD 326 CG11247-PD 95..209 91..213 173 34.1 Plus