Clone Sequence Records
BS14405.3prime Sequence
786 bp (688 high quality bases) assembled on 2006-10-13
> BS14405.3prime
ATGGTCTAGAAAGCTTTTATAAGAACACGGAATTCTTGGCGATTATATAG
TCAATCTCGCTCGTCCAGGGATTCTTGAAGGCCCGCCACTCGCTCTGCAG
CTGAATGTAGCTGTTGTCCTTGCACCGGAAGCGGTAGACCTGAGTGGTCA
CCTTTTCCGGCACCTGCATCACCATCTTGTGAGACTCCATCAGCGCAGCG
ATGTCTTCGTTGTGGAAGTACTCGTAGAAGCTGGTGCCGAGGATCTCCTG
AGGCAGGAAACCAATCACGAGGGTGGCACGCTGGTCTATGAACAGGAACT
TGCCCTCGCCGGAGTGGCGCGAGATGAAGAGCACGTGCCGTATGTTCGGG
TGATTGTCCAGCGAGGCGGGTACTGTGGAGTTGCGAACGTTGGGCGGAAT
GCGACCAATTGCCACAAGGCAGGATAGATTCGTTGTCTGCTCGTCGCTGT
CGGCGTCCTGGTCCTCGTCCTTGATGGGTGTCCAGGACTTGAGGTAGCCC
GTGCACTGGATAACCCGGTACTTGTGGCCCGTAGTCAGTCTGGACTTGCG
CTTCGTGGAGCTCCGGGAGCTGGAGGACGTATCGGACTCCTCCTTGATCT
GGTTGTTGCTGGCAGTGCGCAGCTTCATGCGGCAGAAGAAGGAGCGCCGG
GCACCCGGACACAGGCGGCACAAGCTCTGTGGAACGTCGGTCTTTACGGG
CAACATGGTCTTCGCATCGATAAGCCTTTCCCTGGGACACTGTTCCAGTG
AGGATAGCTGCTCCTTAACCTTGCCTATGTCCTTCG
BS14405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8727-PA | 1242 | cyc-RA | 473..1242 | 786..17 | 3800 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyc-RA | 1625 | CG8727-RA | 637..1406 | 786..17 | 3820 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19814307..19814736 | 279..708 | 2120 | 99.5 | Plus |
3L | 28110227 | 3L | 19813989..19814251 | 17..279 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 19814807..19814884 | 709..786 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:52:28 has no hits.
BS14405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:37 Download gff for
BS14405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8727-PA | 473..1242 | 17..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:15 Download gff for
BS14405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 637..1409 | 13..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:53 Download gff for
BS14405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 637..1409 | 13..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:53 Download gff for
BS14405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19813986..19814250 | 13..278 | 99 | <- | Plus |
3L | 19814307..19814736 | 279..708 | 99 | <- | Plus |
3L | 19814807..19814884 | 709..786 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:15 Download gff for
BS14405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19807086..19807350 | 13..278 | 99 | <- | Plus |
arm_3L | 19807407..19807836 | 279..708 | 99 | <- | Plus |
arm_3L | 19807907..19807984 | 709..786 | 100 | | Plus |
BS14405.5prime Sequence
829 bp (754 high quality bases) assembled on 2006-10-13
> BS14405.5prime
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCC
TCCAGCTCCCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCA
CAAGTACCGGGTTATCCAGTGCACGGGCTACCTTCAGTCCTGGACACCCA
TCAAGGACGAGGACCAGGACGCCGACAGC
BS14405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8727-PA | 1242 | cyc-RA | 1..813 | 17..829 | 4015 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyc-RA | 1625 | CG8727-RA | 165..977 | 17..829 | 4035 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19814807..19815261 | 566..112 | 2275 | 100 | Minus |
3L | 28110227 | 3L | 19814474..19814736 | 829..567 | 1285 | 99.2 | Minus |
3L | 28110227 | 3L | 19815420..19815496 | 112..36 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:36:03 has no hits.
BS14405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:38 Download gff for
BS14405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8727-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:08 Download gff for
BS14405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 163..977 | 13..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:16 Download gff for
BS14405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 163..977 | 13..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:16 Download gff for
BS14405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19814474..19814736 | 567..829 | 99 | <- | Minus |
3L | 19814807..19815261 | 112..566 | 100 | <- | Minus |
3L | 19815421..19815495 | 37..111 | 100 | <- | Minus |
3L | 19815755..19815776 | 13..36 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:08 Download gff for
BS14405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19807574..19807836 | 567..829 | 99 | <- | Minus |
arm_3L | 19807907..19808361 | 112..566 | 100 | <- | Minus |
arm_3L | 19808521..19808595 | 37..111 | 100 | <- | Minus |
arm_3L | 19808855..19808876 | 13..36 | 91 | | Minus |
BS14405.complete Sequence
1274 bp assembled on 2006-11-01
GenBank Submission: FJ637651
> BS14405.complete
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCC
TCCAGCTCCCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCA
CAAGTACCGGGTTATCCAGTGCACGGGCTACCTCAAGTCCTGGACACCCA
TCAAGGACGAGGACCAGGACGCCGACAGCGACGAGCAGACAACGAATCTA
TCCTGCCTTGTGGCAATTGGTCGCATTCCGCCCAACGTTCGCAACTCCAC
AGTACCCGCCTCGCTGGACAATCACCCGAACATACGGCACGTGCTCTTCA
TCTCGCGCCACTCCGGCGAGGGCAAGTTCCTGTTCATAGACCAGCGTGCC
ACCCTCGTGATTGGTTTCCTGCCTCAGGAGATCCTCGGCACCAGCTTCTA
CGAGTACTTCCACAACGAAGACATCGCTGCGCTGATGGAGTCTCACAAGA
TGGTGATGCAGGTGCCGGAAAAGGTGACCACTCAGGTCTACCGCTTCCGG
TGCAAGGACAACAGCTACATTCAGCTGCAGAGCGAGTGGCGGGCCTTCAA
GAATCCCTGGACGAGCGAGATTGACTATATAATCGCCAAGAATTCCGTGT
TCTTATAAAAGCTTTCTAGACCAT
BS14405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyc-RA | 1242 | CG8727-PA | 1..1242 | 17..1258 | 6195 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyc-RA | 1625 | CG8727-RA | 165..1406 | 17..1258 | 6195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19814807..19815261 | 566..112 | 2275 | 100 | Minus |
3L | 28110227 | 3L | 19814307..19814736 | 996..567 | 2135 | 99.8 | Minus |
3L | 28110227 | 3L | 19813989..19814251 | 1258..996 | 1315 | 100 | Minus |
3L | 28110227 | 3L | 19815420..19815496 | 112..36 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:30:10 has no hits.
BS14405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:08 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 1..1242 | 17..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:20 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 163..1409 | 13..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:13 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 165..1404 | 17..1256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:09 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 163..1409 | 13..1262 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:55 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyc-RA | 165..1404 | 17..1256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:55 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19813991..19814250 | 997..1256 | 100 | <- | Minus |
3L | 19814307..19814736 | 567..996 | 99 | <- | Minus |
3L | 19814807..19815261 | 112..566 | 100 | <- | Minus |
3L | 19815421..19815495 | 37..111 | 100 | <- | Minus |
3L | 19815755..19815774 | 17..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:13 Download gff for
BS14405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19807091..19807350 | 997..1256 | 100 | <- | Minus |
arm_3L | 19807407..19807836 | 567..996 | 99 | <- | Minus |
arm_3L | 19807907..19808361 | 112..566 | 100 | <- | Minus |
arm_3L | 19808521..19808595 | 37..111 | 100 | <- | Minus |
arm_3L | 19808855..19808874 | 17..36 | 100 | | Minus |
BS14405.pep Sequence
Translation from 16 to 1257
> BS14405.pep
MEVQEFCENMEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYI
NELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPFNGSDYRPS
FLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQ
SWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLC
PGARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVI
QCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIPPNVRNSTVPASL
DNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHN
EDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTS
EIDYIIAKNSVFL*
BS14405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyc-PA | 413 | CG8727-PA | 1..413 | 1..413 | 2150 | 100 | Plus |
tgo-PB | 642 | CG11987-PB | 4..384 | 24..410 | 765 | 42.3 | Plus |
tgo-PA | 642 | CG11987-PA | 4..384 | 24..410 | 765 | 42.3 | Plus |
Clk-PA | 1023 | CG7391-PA | 1..362 | 13..411 | 323 | 25.7 | Plus |
Clk-PD | 1027 | CG7391-PD | 2..366 | 15..411 | 316 | 25.9 | Plus |