Clone BS14405 Report

Search the DGRC for BS14405

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptcyc-RA
Protein status:BS14405.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14405.3prime Sequence

786 bp (688 high quality bases) assembled on 2006-10-13

> BS14405.3prime
ATGGTCTAGAAAGCTTTTATAAGAACACGGAATTCTTGGCGATTATATAG
TCAATCTCGCTCGTCCAGGGATTCTTGAAGGCCCGCCACTCGCTCTGCAG
CTGAATGTAGCTGTTGTCCTTGCACCGGAAGCGGTAGACCTGAGTGGTCA
CCTTTTCCGGCACCTGCATCACCATCTTGTGAGACTCCATCAGCGCAGCG
ATGTCTTCGTTGTGGAAGTACTCGTAGAAGCTGGTGCCGAGGATCTCCTG
AGGCAGGAAACCAATCACGAGGGTGGCACGCTGGTCTATGAACAGGAACT
TGCCCTCGCCGGAGTGGCGCGAGATGAAGAGCACGTGCCGTATGTTCGGG
TGATTGTCCAGCGAGGCGGGTACTGTGGAGTTGCGAACGTTGGGCGGAAT
GCGACCAATTGCCACAAGGCAGGATAGATTCGTTGTCTGCTCGTCGCTGT
CGGCGTCCTGGTCCTCGTCCTTGATGGGTGTCCAGGACTTGAGGTAGCCC
GTGCACTGGATAACCCGGTACTTGTGGCCCGTAGTCAGTCTGGACTTGCG
CTTCGTGGAGCTCCGGGAGCTGGAGGACGTATCGGACTCCTCCTTGATCT
GGTTGTTGCTGGCAGTGCGCAGCTTCATGCGGCAGAAGAAGGAGCGCCGG
GCACCCGGACACAGGCGGCACAAGCTCTGTGGAACGTCGGTCTTTACGGG
CAACATGGTCTTCGCATCGATAAGCCTTTCCCTGGGACACTGTTCCAGTG
AGGATAGCTGCTCCTTAACCTTGCCTATGTCCTTCG

BS14405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8727-PA 1242 cyc-RA 473..1242 786..17 3800 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
cyc-RA 1625 CG8727-RA 637..1406 786..17 3820 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19814307..19814736 279..708 2120 99.5 Plus
3L 28110227 3L 19813989..19814251 17..279 1315 100 Plus
3L 28110227 3L 19814807..19814884 709..786 390 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:52:28 has no hits.

BS14405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:37 Download gff for BS14405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8727-PA 473..1242 17..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:15 Download gff for BS14405.3prime
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 637..1409 13..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:53 Download gff for BS14405.3prime
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 637..1409 13..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:53 Download gff for BS14405.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19813986..19814250 13..278 99 <- Plus
3L 19814307..19814736 279..708 99 <- Plus
3L 19814807..19814884 709..786 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:15 Download gff for BS14405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19807086..19807350 13..278 99 <- Plus
arm_3L 19807407..19807836 279..708 99 <- Plus
arm_3L 19807907..19807984 709..786 100   Plus

BS14405.5prime Sequence

829 bp (754 high quality bases) assembled on 2006-10-13

> BS14405.5prime
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCC
TCCAGCTCCCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCA
CAAGTACCGGGTTATCCAGTGCACGGGCTACCTTCAGTCCTGGACACCCA
TCAAGGACGAGGACCAGGACGCCGACAGC

BS14405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8727-PA 1242 cyc-RA 1..813 17..829 4015 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:07
Subject Length Description Subject Range Query Range Score Percent Strand
cyc-RA 1625 CG8727-RA 165..977 17..829 4035 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19814807..19815261 566..112 2275 100 Minus
3L 28110227 3L 19814474..19814736 829..567 1285 99.2 Minus
3L 28110227 3L 19815420..19815496 112..36 385 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:36:03 has no hits.

BS14405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:38 Download gff for BS14405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8727-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:08 Download gff for BS14405.5prime
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 163..977 13..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:16 Download gff for BS14405.5prime
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 163..977 13..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:16 Download gff for BS14405.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19814474..19814736 567..829 99 <- Minus
3L 19814807..19815261 112..566 100 <- Minus
3L 19815421..19815495 37..111 100 <- Minus
3L 19815755..19815776 13..36 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:08 Download gff for BS14405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19807574..19807836 567..829 99 <- Minus
arm_3L 19807907..19808361 112..566 100 <- Minus
arm_3L 19808521..19808595 37..111 100 <- Minus
arm_3L 19808855..19808876 13..36 91   Minus

BS14405.complete Sequence

1274 bp assembled on 2006-11-01

GenBank Submission: FJ637651

> BS14405.complete
GAAGTTATCAGTCGACATGGAAGTTCAGGAGTTCTGCGAAAATATGGAGG
AGATCGAAGATGAAAACTACGACGAGGAGAAGTCAGCTAGAACCTCGGAT
GAAAATCGCAAGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAA
GATGAACACGTACATCAACGAGCTCTCCTCCATGATTCCCATGTGCTTTG
CGATGCAGCGAAAGCTGGACAAACTGACTGTGCTCCGGATGGCAGTGCAG
CATCTGCGAGGGATCCGTGGCAGCGGCAGCTTACATCCATTCAACGGATC
CGATTACCGGCCTAGCTTCCTGTCCGACCAGGAGCTCAAGATGATTATCC
TGCAAGCGTCGGAGGGATTCCTGTTCGTGGTGGGTTGTGACCGAGGACGC
ATCCTGTACGTTTCCGATTCGGTGTCCAGTGTGCTGAACAGCACCCAAGC
GGACCTGCTGGGACAGAGCTGGTTCGACGTCCTGCATCCGAAGGACATAG
GCAAGGTTAAGGAGCAGCTATCCTCACTGGAACAGTGTCCCAGGGAAAGG
CTTATCGATGCGAAGACCATGTTGCCCGTTAAGACCGACGTTCCACAGAG
CTTGTGCCGCCTGTGTCCGGGTGCCCGGCGCTCCTTCTTCTGCCGCATGA
AGCTGCGCACTGCCAGCAACAACCAGATCAAGGAGGAGTCCGATACGTCC
TCCAGCTCCCGGAGCTCCACGAAGCGCAAGTCCAGACTGACTACGGGCCA
CAAGTACCGGGTTATCCAGTGCACGGGCTACCTCAAGTCCTGGACACCCA
TCAAGGACGAGGACCAGGACGCCGACAGCGACGAGCAGACAACGAATCTA
TCCTGCCTTGTGGCAATTGGTCGCATTCCGCCCAACGTTCGCAACTCCAC
AGTACCCGCCTCGCTGGACAATCACCCGAACATACGGCACGTGCTCTTCA
TCTCGCGCCACTCCGGCGAGGGCAAGTTCCTGTTCATAGACCAGCGTGCC
ACCCTCGTGATTGGTTTCCTGCCTCAGGAGATCCTCGGCACCAGCTTCTA
CGAGTACTTCCACAACGAAGACATCGCTGCGCTGATGGAGTCTCACAAGA
TGGTGATGCAGGTGCCGGAAAAGGTGACCACTCAGGTCTACCGCTTCCGG
TGCAAGGACAACAGCTACATTCAGCTGCAGAGCGAGTGGCGGGCCTTCAA
GAATCCCTGGACGAGCGAGATTGACTATATAATCGCCAAGAATTCCGTGT
TCTTATAAAAGCTTTCTAGACCAT

BS14405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
cyc-RA 1242 CG8727-PA 1..1242 17..1258 6195 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
cyc-RA 1625 CG8727-RA 165..1406 17..1258 6195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19814807..19815261 566..112 2275 100 Minus
3L 28110227 3L 19814307..19814736 996..567 2135 99.8 Minus
3L 28110227 3L 19813989..19814251 1258..996 1315 100 Minus
3L 28110227 3L 19815420..19815496 112..36 385 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:30:10 has no hits.

BS14405.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:08 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 1..1242 17..1258 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:20 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 163..1409 13..1262 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:13 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 165..1404 17..1256 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:09 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 163..1409 13..1262 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:55 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
cyc-RA 165..1404 17..1256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:55 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19813991..19814250 997..1256 100 <- Minus
3L 19814307..19814736 567..996 99 <- Minus
3L 19814807..19815261 112..566 100 <- Minus
3L 19815421..19815495 37..111 100 <- Minus
3L 19815755..19815774 17..36 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:13 Download gff for BS14405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19807091..19807350 997..1256 100 <- Minus
arm_3L 19807407..19807836 567..996 99 <- Minus
arm_3L 19807907..19808361 112..566 100 <- Minus
arm_3L 19808521..19808595 37..111 100 <- Minus
arm_3L 19808855..19808874 17..36 100   Minus

BS14405.pep Sequence

Translation from 16 to 1257

> BS14405.pep
MEVQEFCENMEEIEDENYDEEKSARTSDENRKQNHSEIEKRRRDKMNTYI
NELSSMIPMCFAMQRKLDKLTVLRMAVQHLRGIRGSGSLHPFNGSDYRPS
FLSDQELKMIILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQADLLGQ
SWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLC
PGARRSFFCRMKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVI
QCTGYLKSWTPIKDEDQDADSDEQTTNLSCLVAIGRIPPNVRNSTVPASL
DNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEILGTSFYEYFHN
EDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWRAFKNPWTS
EIDYIIAKNSVFL*

BS14405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
cyc-PA 413 CG8727-PA 1..413 1..413 2150 100 Plus
tgo-PB 642 CG11987-PB 4..384 24..410 765 42.3 Plus
tgo-PA 642 CG11987-PA 4..384 24..410 765 42.3 Plus
Clk-PA 1023 CG7391-PA 1..362 13..411 323 25.7 Plus
Clk-PD 1027 CG7391-PD 2..366 15..411 316 25.9 Plus