Clone BS14408 Report

Search the DGRC for BS14408

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptVsx1-RA
Protein status:BS14408.pep: full length peptide match
Sequenced Size:2546

Clone Sequence Records

BS14408.3prime Sequence

781 bp (656 high quality bases) assembled on 2006-10-13

> BS14408.3prime
ATGGTCTAGAAAGCTTTCATCTGGACCCCAGATGCGCCTGCTCCTGCTTC
ACTTTCAGCAGGAGCTGCTCCTGCAGACGCATCTCCTCGTCGTGGTCGTC
GCAGATGTCTATCTCGGGATCGGCATCCGCATCCGCATCCACATCCGCCT
CAACATCCGCATCCGCATCGCACTCGTTGTCGTGCTCGTTGTTGGTATTG
GTATCGTTATCCACGGGCTCCACATCCTCCTCCACCTCACAGTCCTTGTC
CAGTTCCATGTCCTCGATGTCGTCCTGCTCCTCCTCCGCCTCCGATTCCG
CAATGGTCACGGCTGCGGAGGCGGACGCTGAGGCTGCGGCCACCGCTGCT
GCCGCCGCTGCATTCCGTGCGTTTGCTGCTGCGGCAACAGCTGCTGCGGC
CGCTGCAGCAGCCACCGCTGCCTCGGCGTAGCCGGCCGCAGCATTGTGGT
GGTGCATATGGTGCACCGAATGGTGGTGCTGGTGGTGGTGATGCTGCTGC
TGCTGCTGCGCCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCAGTTGCTG
CAGGTGGTGCAGGTGCTGCTGCTGGTTGTACGGATGGTGTGCTGGTGGCC
CAGTCGAGCCCGCACCCGTTCCCGACCCGGAACCGGATCCCGAACCCGAG
CCCGTTCCAGCAACTTGCTGCTGCTGCAAGGAAATTCTCTGCGGCGTGCA
AGTGATGGTGATGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGG
TGGTGCAACAGCATGTGGGCGTGCGCCTGAC

BS14408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4136-PA 2514 CG4136-RA 1753..2514 779..17 3750 99.7 Minus
CG9097-PB 2934 bab1-RB 2497..2537 758..718 155 95.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 2045..2808 779..15 3785 99.7 Minus
Vsx1-RA 2983 CG4136-RA 2045..2808 779..15 3785 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5611277..5612040 779..15 3760 99.7 Minus
Blast to na_te.dros performed 2015-02-10 23:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 607..772 318..479 170 61.5 Plus
gypsy2 6841 gypsy2 GYPSY2 6841bp 1388..1426 405..443 114 76.9 Plus

BS14408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for BS14408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4136-PA 1752..2514 17..781 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:54 Download gff for BS14408.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 2044..2814 7..781 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:10 Download gff for BS14408.3prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 2044..2814 7..781 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:10 Download gff for BS14408.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5611276..5612046 7..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:54 Download gff for BS14408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5505309..5506079 7..781 99   Minus

BS14408.5prime Sequence

788 bp (780 high quality bases) assembled on 2006-10-13

> BS14408.5prime
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAAT
CCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGG
TGGATCCGGCGGTGGAGCCGGAGTGGGCGGATCGGGCG

BS14408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4136-PA 2514 CG4136-RA 1..772 17..788 3810 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 293..1064 17..788 3830 99.7 Plus
Vsx1-RA 2983 CG4136-RA 293..1064 17..788 3830 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5594547..5595090 17..560 2705 99.8 Plus
X 23542271 X 5606082..5606312 558..788 1140 99.6 Plus
Blast to na_te.dros performed on 2015-02-13 12:59:38 has no hits.

BS14408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for BS14408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4136-PA 1..772 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:51:39 Download gff for BS14408.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..1064 17..788 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:43 Download gff for BS14408.5prime
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..1064 17..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:43 Download gff for BS14408.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5594547..5595090 17..560 99 -> Plus
X 5606085..5606312 561..788 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:51:39 Download gff for BS14408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5488580..5489123 17..560 99 -> Plus
arm_X 5500118..5500345 561..788 99   Plus

BS14408.complete Sequence

2546 bp assembled on 2008-08-14

GenBank Submission: KX800846

> BS14408.complete
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAAT
CCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGG
TGGATCCGGCGGTGGAGCCGGAGTGGGCGGATCGGGCGGTGGATCGGGCA
CGTCGGGCAGCAACTCCTCGACATCCGGAAACGGCGGTAACGGCGGCAGC
TCCGGCAGTCGCTCCTCGCCCGCTGGTCCGCATCACTCGGCCGCACTGGC
TGCCCATCAGCATGCAGCGGCTGCTGCGGCCGCCGCTCATCATCATGCCG
CTGCCGCTGCTGCCGCCCATCATGCTCACCACGCCCACGCCCAGGCGCAC
GCTCATGCCCACGCGCATGTCCACGCCCATGCCGCTCACGCCGCCCATGC
CGCCCACGCCCATGCCCATCATGCCGAGGCATTTCTGGGAGCAGCGGGCG
GAGCTGGAGGCAATCCCAATAGCCTGCTGGCCGCCCATGGTGGCGATGTT
CTTGTCGGTCCTGGCGGCACGGGTCCCGGCGGCAAGAAGAAGAACAAGCG
ACGCCACGGACGCACGATCTTCACCAGCAGCCAGCTGGAGGAGCTGGAGA
AGGCCTTCAAGGAGGCACACTACCCGGACGTGAGTGCGCGCGAGCTGCTG
TCCATGAAAACTGGCCTCGCCGAGGATCGCATTCAGGTGTGGTACCAGAA
TCGCCGGGCCAAGTGGCGCAAAACGGAGAAATGCTGGGGCCACAGCACCA
AAATGGCCGAATACGGATTGTATGGAGCGATGGTGAGGCATTCGCTGCCA
CTGCCGGAGACCATCATCAAGTCGGCCAAGGAGGACGAGTCGGTGGCGCC
GTGGCTGCTGGGCATGCACAAGAAGTCACTGGAGGCCGCCGAGCTGCTCA
AGAGCGACGAGAGTGACCGGGAGACGCCCACCTCGGACGATACGAACACC
AGCTACTCGGCGGGCAGCACCCATAATTCACCGATCTCCAGTTTCTCGAT
CTCGCGTCTCCTCTTTGACGCCCCACCGCCGGCGGCGGGTTCCGCTGGTG
GCAAGGGACACCACCACCATCATCACCACCACAAGGGCCACCATCATGCC
CACGTTCATGCCCAGGCGCAGGCGCACGCCCACATGCTGCTGCACCACCA
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCATCACCATCACTTGC
ACGCCGCAGAGAATTCCTTGCAGCAGCAGCAAGTTGCTGGAACGGGCTCG
GGTTCGGGATCCGGTTCCGGGTCGGGAACGGGTGCGGGCTCGACTGGGCC
ACCAGCACACCATCCGTACAACCAGCAGCAGCACCTGCACCACCTGCAGC
AACTGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGCAGCAGCAGCAG
CAGCATCACCACCACCAGCACCACCATTCGGTGCACCATATGCACCACCA
CAATGCTGCGGCCGGCTACGCCGAGGCAGCGGTGGCTGCTGCAGCGGCCG
CAGCAGCTGTTGCCGCAGCAGCAAACGCACGGAATGCAGCGGCGGCAGCA
GCGGTGGCCGCAGCCTCAGCGTCCGCCTCCGCAGCCGTGACCATTGCGGA
ATCGGAGGCGGAGGAGGAGCAGGACGACATCGAGGACATGGAACTGGACA
AGGACTGTGAGGTGGAGGAGGATGTGGAGCCCGTGGATAACGATACCAAT
ACCAACAACGAGCACGACAACGAGTGCGATGCGGATGCGGATGTTGAGGC
GGATGTGGATGCGGATGCGGATGCCGATCCCGAGATAGACATCTGCGACG
ACCACGACGAGGAGATGCGTCTGCAGGAGCAGCTCCTGCTGAAAGTGAAG
CAGGAGCAGGCGCATCTGGGGTCCAGATGAAAGCTTTCTAGACCAT

BS14408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 2514 CG4136-PB 1..2514 17..2530 12540 99.9 Plus
Vsx1-RA 2514 CG4136-PA 1..2514 17..2530 12540 99.9 Plus
Vsx2-RA 1923 CG33980-PA 673..1007 1184..1518 655 79.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-RB 3633 CG4136-RB 293..2808 17..2532 12550 99.9 Plus
Vsx1-RA 2983 CG4136-RA 293..2808 17..2532 12550 99.9 Plus
Vsx2-RA 2358 CG33980-RA 894..1228 1184..1518 655 79.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5610842..5612040 1334..2532 5995 100 Plus
X 23542271 X 5606082..5606863 558..1339 3895 99.9 Plus
X 23542271 X 5594547..5595090 17..560 2705 99.8 Plus
X 23542271 X 5531265..5531447 1516..1334 405 81.4 Minus
X 23542271 X 5546722..5546877 1339..1184 255 77.6 Minus
Blast to na_te.dros performed 2014-11-27 14:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2854 1695..2274 310 55.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..7088 1709..2054 296 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2879 1708..2264 284 53 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7032 1793..2102 263 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2751..3011 1775..2043 238 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2538 1768..2003 227 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..7186 1786..2243 223 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6859 1763..1882 211 66.9 Plus
roo 9092 roo DM_ROO 9092bp 1055..1143 1790..1881 199 72.8 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 607..772 2229..2068 170 61.5 Minus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 600..743 1927..1784 154 59.5 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 572..722 909..1059 125 56.5 Plus

BS14408.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:30 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
CG4136-RA 275..2796 17..2540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:13 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..2805 17..2529 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:21 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
CG4136-RA 275..2787 17..2529 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:33 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
Vsx1-RA 293..2805 17..2529 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:33 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
X 5594547..5595090 17..560 99 -> Plus
X 5606085..5606860 561..1336 99 -> Plus
X 5610845..5612037 1337..2529 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:13 Download gff for BS14408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5488580..5489123 17..560 99 -> Plus
arm_X 5500118..5500893 561..1336 99 -> Plus
arm_X 5504878..5506070 1337..2529 100   Plus

BS14408.pep Sequence

Translation from 16 to 2529

> BS14408.pep
MQATKMRTPFAIQEILGLGAYQQQATASATPSEAPPSPAATPPPTANTPA
NGSLSAVQQQQQQQQQQQQQQQQLQQQQQQAIDSLRESRSISPDVSRLSA
AAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAA
AAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANASG
DEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGG
AGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHA
AAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHA
HHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRT
IFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKW
RKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGM
HKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLF
DAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQ
QQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSGTGAGSTGPPAHHP
YNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVHHMHHHNAAAG
YAEAAVAAAAAAAAVAAAANARNAAAAAAVAAASASASAAVTIAESEAEE
EQDDIEDMELDKDCEVEEDVEPVDNDTNTNNEHDNECDADADVEADVDAD
ADADPEIDICDDHDEEMRLQEQLLLKVKQEQAHLGSR*

BS14408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
Vsx1-PB 837 CG4136-PB 1..837 1..837 4412 100 Plus
Vsx1-PA 837 CG4136-PA 1..837 1..837 4412 100 Plus
Vsx2-PA 640 CG33980-PA 103..544 289..703 677 40.7 Plus
Vsx2-PB 645 CG33980-PB 103..549 289..703 661 40.3 Plus
Gsc-PC 415 CG2851-PC 34..342 134..455 316 31.8 Plus