Clone Sequence Records
BS14408.3prime Sequence
781 bp (656 high quality bases) assembled on 2006-10-13
> BS14408.3prime
ATGGTCTAGAAAGCTTTCATCTGGACCCCAGATGCGCCTGCTCCTGCTTC
ACTTTCAGCAGGAGCTGCTCCTGCAGACGCATCTCCTCGTCGTGGTCGTC
GCAGATGTCTATCTCGGGATCGGCATCCGCATCCGCATCCACATCCGCCT
CAACATCCGCATCCGCATCGCACTCGTTGTCGTGCTCGTTGTTGGTATTG
GTATCGTTATCCACGGGCTCCACATCCTCCTCCACCTCACAGTCCTTGTC
CAGTTCCATGTCCTCGATGTCGTCCTGCTCCTCCTCCGCCTCCGATTCCG
CAATGGTCACGGCTGCGGAGGCGGACGCTGAGGCTGCGGCCACCGCTGCT
GCCGCCGCTGCATTCCGTGCGTTTGCTGCTGCGGCAACAGCTGCTGCGGC
CGCTGCAGCAGCCACCGCTGCCTCGGCGTAGCCGGCCGCAGCATTGTGGT
GGTGCATATGGTGCACCGAATGGTGGTGCTGGTGGTGGTGATGCTGCTGC
TGCTGCTGCGCCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGCAGTTGCTG
CAGGTGGTGCAGGTGCTGCTGCTGGTTGTACGGATGGTGTGCTGGTGGCC
CAGTCGAGCCCGCACCCGTTCCCGACCCGGAACCGGATCCCGAACCCGAG
CCCGTTCCAGCAACTTGCTGCTGCTGCAAGGAAATTCTCTGCGGCGTGCA
AGTGATGGTGATGCTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGG
TGGTGCAACAGCATGTGGGCGTGCGCCTGAC
BS14408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4136-PA | 2514 | CG4136-RA | 1753..2514 | 779..17 | 3750 | 99.7 | Minus |
CG9097-PB | 2934 | bab1-RB | 2497..2537 | 758..718 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vsx1-RB | 3633 | CG4136-RB | 2045..2808 | 779..15 | 3785 | 99.7 | Minus |
Vsx1-RA | 2983 | CG4136-RA | 2045..2808 | 779..15 | 3785 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5611277..5612040 | 779..15 | 3760 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-10 23:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 607..772 | 318..479 | 170 | 61.5 | Plus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1388..1426 | 405..443 | 114 | 76.9 | Plus |
BS14408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for
BS14408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4136-PA | 1752..2514 | 17..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:54 Download gff for
BS14408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 2044..2814 | 7..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:32:10 Download gff for
BS14408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 2044..2814 | 7..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:32:10 Download gff for
BS14408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5611276..5612046 | 7..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:54 Download gff for
BS14408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5505309..5506079 | 7..781 | 99 | | Minus |
BS14408.5prime Sequence
788 bp (780 high quality bases) assembled on 2006-10-13
> BS14408.5prime
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAAT
CCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGG
TGGATCCGGCGGTGGAGCCGGAGTGGGCGGATCGGGCG
BS14408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4136-PA | 2514 | CG4136-RA | 1..772 | 17..788 | 3810 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vsx1-RB | 3633 | CG4136-RB | 293..1064 | 17..788 | 3830 | 99.7 | Plus |
Vsx1-RA | 2983 | CG4136-RA | 293..1064 | 17..788 | 3830 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5594547..5595090 | 17..560 | 2705 | 99.8 | Plus |
X | 23542271 | X | 5606082..5606312 | 558..788 | 1140 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:59:38 has no hits.
BS14408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for
BS14408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4136-PA | 1..772 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:51:39 Download gff for
BS14408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 293..1064 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:24:43 Download gff for
BS14408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 293..1064 | 17..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:24:43 Download gff for
BS14408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5594547..5595090 | 17..560 | 99 | -> | Plus |
X | 5606085..5606312 | 561..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:51:39 Download gff for
BS14408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5488580..5489123 | 17..560 | 99 | -> | Plus |
arm_X | 5500118..5500345 | 561..788 | 99 | | Plus |
BS14408.complete Sequence
2546 bp assembled on 2008-08-14
GenBank Submission: KX800846
> BS14408.complete
GAAGTTATCAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCA
TTCAGGAGATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGT
GCCACGCCCTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCAC
AGCGAATACGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGC
AGCAGCAACAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAA
CAGCAGGCGATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGT
CTCCAGACTCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACT
GCCAATTGCCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTAT
GCCGCTGCAGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACAT
GACCACCTTGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGAT
TCAGCACGCCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCT
CAGTTTGCAGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTT
GGCCAATGCCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCAT
CGGGCAACGGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAAT
CCGACCTCGAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGG
TGGATCCGGCGGTGGAGCCGGAGTGGGCGGATCGGGCGGTGGATCGGGCA
CGTCGGGCAGCAACTCCTCGACATCCGGAAACGGCGGTAACGGCGGCAGC
TCCGGCAGTCGCTCCTCGCCCGCTGGTCCGCATCACTCGGCCGCACTGGC
TGCCCATCAGCATGCAGCGGCTGCTGCGGCCGCCGCTCATCATCATGCCG
CTGCCGCTGCTGCCGCCCATCATGCTCACCACGCCCACGCCCAGGCGCAC
GCTCATGCCCACGCGCATGTCCACGCCCATGCCGCTCACGCCGCCCATGC
CGCCCACGCCCATGCCCATCATGCCGAGGCATTTCTGGGAGCAGCGGGCG
GAGCTGGAGGCAATCCCAATAGCCTGCTGGCCGCCCATGGTGGCGATGTT
CTTGTCGGTCCTGGCGGCACGGGTCCCGGCGGCAAGAAGAAGAACAAGCG
ACGCCACGGACGCACGATCTTCACCAGCAGCCAGCTGGAGGAGCTGGAGA
AGGCCTTCAAGGAGGCACACTACCCGGACGTGAGTGCGCGCGAGCTGCTG
TCCATGAAAACTGGCCTCGCCGAGGATCGCATTCAGGTGTGGTACCAGAA
TCGCCGGGCCAAGTGGCGCAAAACGGAGAAATGCTGGGGCCACAGCACCA
AAATGGCCGAATACGGATTGTATGGAGCGATGGTGAGGCATTCGCTGCCA
CTGCCGGAGACCATCATCAAGTCGGCCAAGGAGGACGAGTCGGTGGCGCC
GTGGCTGCTGGGCATGCACAAGAAGTCACTGGAGGCCGCCGAGCTGCTCA
AGAGCGACGAGAGTGACCGGGAGACGCCCACCTCGGACGATACGAACACC
AGCTACTCGGCGGGCAGCACCCATAATTCACCGATCTCCAGTTTCTCGAT
CTCGCGTCTCCTCTTTGACGCCCCACCGCCGGCGGCGGGTTCCGCTGGTG
GCAAGGGACACCACCACCATCATCACCACCACAAGGGCCACCATCATGCC
CACGTTCATGCCCAGGCGCAGGCGCACGCCCACATGCTGCTGCACCACCA
GCAGCAGCAGCAGCAACAGCAGCAGCAGCAACAGCATCACCATCACTTGC
ACGCCGCAGAGAATTCCTTGCAGCAGCAGCAAGTTGCTGGAACGGGCTCG
GGTTCGGGATCCGGTTCCGGGTCGGGAACGGGTGCGGGCTCGACTGGGCC
ACCAGCACACCATCCGTACAACCAGCAGCAGCACCTGCACCACCTGCAGC
AACTGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGCAGCAGCAGCAG
CAGCATCACCACCACCAGCACCACCATTCGGTGCACCATATGCACCACCA
CAATGCTGCGGCCGGCTACGCCGAGGCAGCGGTGGCTGCTGCAGCGGCCG
CAGCAGCTGTTGCCGCAGCAGCAAACGCACGGAATGCAGCGGCGGCAGCA
GCGGTGGCCGCAGCCTCAGCGTCCGCCTCCGCAGCCGTGACCATTGCGGA
ATCGGAGGCGGAGGAGGAGCAGGACGACATCGAGGACATGGAACTGGACA
AGGACTGTGAGGTGGAGGAGGATGTGGAGCCCGTGGATAACGATACCAAT
ACCAACAACGAGCACGACAACGAGTGCGATGCGGATGCGGATGTTGAGGC
GGATGTGGATGCGGATGCGGATGCCGATCCCGAGATAGACATCTGCGACG
ACCACGACGAGGAGATGCGTCTGCAGGAGCAGCTCCTGCTGAAAGTGAAG
CAGGAGCAGGCGCATCTGGGGTCCAGATGAAAGCTTTCTAGACCAT
BS14408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vsx1-RB | 2514 | CG4136-PB | 1..2514 | 17..2530 | 12540 | 99.9 | Plus |
Vsx1-RA | 2514 | CG4136-PA | 1..2514 | 17..2530 | 12540 | 99.9 | Plus |
Vsx2-RA | 1923 | CG33980-PA | 673..1007 | 1184..1518 | 655 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vsx1-RB | 3633 | CG4136-RB | 293..2808 | 17..2532 | 12550 | 99.9 | Plus |
Vsx1-RA | 2983 | CG4136-RA | 293..2808 | 17..2532 | 12550 | 99.9 | Plus |
Vsx2-RA | 2358 | CG33980-RA | 894..1228 | 1184..1518 | 655 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5610842..5612040 | 1334..2532 | 5995 | 100 | Plus |
X | 23542271 | X | 5606082..5606863 | 558..1339 | 3895 | 99.9 | Plus |
X | 23542271 | X | 5594547..5595090 | 17..560 | 2705 | 99.8 | Plus |
X | 23542271 | X | 5531265..5531447 | 1516..1334 | 405 | 81.4 | Minus |
X | 23542271 | X | 5546722..5546877 | 1339..1184 | 255 | 77.6 | Minus |
Blast to na_te.dros performed 2014-11-27 14:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2854 | 1695..2274 | 310 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..7088 | 1709..2054 | 296 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2879 | 1708..2264 | 284 | 53 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7032 | 1793..2102 | 263 | 56.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2751..3011 | 1775..2043 | 238 | 58.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2538 | 1768..2003 | 227 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..7186 | 1786..2243 | 223 | 55.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6859 | 1763..1882 | 211 | 66.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1055..1143 | 1790..1881 | 199 | 72.8 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 607..772 | 2229..2068 | 170 | 61.5 | Minus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 600..743 | 1927..1784 | 154 | 59.5 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 572..722 | 909..1059 | 125 | 56.5 | Plus |
BS14408.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:17:30 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4136-RA | 275..2796 | 17..2540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:13 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 293..2805 | 17..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:25:21 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4136-RA | 275..2787 | 17..2529 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:33 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vsx1-RA | 293..2805 | 17..2529 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:33 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5594547..5595090 | 17..560 | 99 | -> | Plus |
X | 5606085..5606860 | 561..1336 | 99 | -> | Plus |
X | 5610845..5612037 | 1337..2529 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:13 Download gff for
BS14408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5488580..5489123 | 17..560 | 99 | -> | Plus |
arm_X | 5500118..5500893 | 561..1336 | 99 | -> | Plus |
arm_X | 5504878..5506070 | 1337..2529 | 100 | | Plus |
BS14408.pep Sequence
Translation from 16 to 2529
> BS14408.pep
MQATKMRTPFAIQEILGLGAYQQQATASATPSEAPPSPAATPPPTANTPA
NGSLSAVQQQQQQQQQQQQQQQQLQQQQQQAIDSLRESRSISPDVSRLSA
AAAAAAAAAAHCQLPVFNPANFYAAAGYAAAADPGNAAAAHHHHMTTLAA
AAYLRGFLPPGFSTPHEFRGHFQQHFGAQFAEQAAARGQEYASSLANASG
DEQSPSKNSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGG
AGVGGSGGGSGTSGSNSSTSGNGGNGGSSGSRSSPAGPHHSAALAAHQHA
AAAAAAAHHHAAAAAAAHHAHHAHAQAHAHAHAHVHAHAAHAAHAAHAHA
HHAEAFLGAAGGAGGNPNSLLAAHGGDVLVGPGGTGPGGKKKNKRRHGRT
IFTSSQLEELEKAFKEAHYPDVSARELLSMKTGLAEDRIQVWYQNRRAKW
RKTEKCWGHSTKMAEYGLYGAMVRHSLPLPETIIKSAKEDESVAPWLLGM
HKKSLEAAELLKSDESDRETPTSDDTNTSYSAGSTHNSPISSFSISRLLF
DAPPPAAGSAGGKGHHHHHHHHKGHHHAHVHAQAQAHAHMLLHHQQQQQQ
QQQQQQHHHHLHAAENSLQQQQVAGTGSGSGSGSGSGTGAGSTGPPAHHP
YNQQQHLHHLQQLQQQQQQQQQQAQQQQQHHHHQHHHSVHHMHHHNAAAG
YAEAAVAAAAAAAAVAAAANARNAAAAAAVAAASASASAAVTIAESEAEE
EQDDIEDMELDKDCEVEEDVEPVDNDTNTNNEHDNECDADADVEADVDAD
ADADPEIDICDDHDEEMRLQEQLLLKVKQEQAHLGSR*
BS14408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vsx1-PB | 837 | CG4136-PB | 1..837 | 1..837 | 4412 | 100 | Plus |
Vsx1-PA | 837 | CG4136-PA | 1..837 | 1..837 | 4412 | 100 | Plus |
Vsx2-PA | 640 | CG33980-PA | 103..544 | 289..703 | 677 | 40.7 | Plus |
Vsx2-PB | 645 | CG33980-PB | 103..549 | 289..703 | 661 | 40.3 | Plus |
Gsc-PC | 415 | CG2851-PC | 34..342 | 134..455 | 316 | 31.8 | Plus |