Clone BS14409 Report

Search the DGRC for BS14409

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptNedd8-RA
Protein status:BS14409.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14409.3prime Sequence

285 bp (285 high quality bases) assembled on 2006-10-13

> BS14409.3prime
ATGGTCTAGAAAGCTTTTACACACAAGGTGTTAGGATTGAATCACCTCCT
CGCAGAGCCAATACCAAGTGAAGAACGGATCCACCTTGCACTTTGTAGTC
CGCCGCGGTTTTATCGTCATTCATTTGCTTGCCGGAGAAAATAAGACGCT
GTTGCTGGGGCGGAATGCCTTCCTTTTCCTCCACGCGCTCCTTGATGCGA
TCTACCTTGTCCGTGGGCTCAATGTCGATCTCGATTTCCTTGCCGGTCAG
GGTCTTCACTTTGATCAACATGTCGACTGATAACT

BS14409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10679-PA 255 Nedd8-RA 1..255 271..17 1275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-RB 612 CG10679-RB 123..377 271..17 1275 100 Minus
Nedd8-RA 471 CG10679-RA 123..377 271..17 1275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18951406..18951539 122..255 670 100 Plus
2L 23513712 2L 18951241..18951346 17..122 530 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:44:06 has no hits.

BS14409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for BS14409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10679-PA 1..255 17..271 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:40 Download gff for BS14409.3prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..382 13..279 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:36 Download gff for BS14409.3prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..382 13..279 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:36 Download gff for BS14409.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18951236..18951346 13..122 98 <- Plus
2L 18951407..18951537 123..253 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:40 Download gff for BS14409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18951236..18951346 13..122 98 <- Plus
arm_2L 18951407..18951537 123..253 100 <- Plus

BS14409.5prime Sequence

285 bp (285 high quality bases) assembled on 2006-10-13

> BS14409.5prime
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGTAAAAGCTTTCTAGACC

BS14409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10679-PA 255 Nedd8-RA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-RB 612 CG10679-RB 123..377 17..271 1275 100 Plus
Nedd8-RA 471 CG10679-RA 123..377 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18951406..18951539 166..33 670 100 Minus
2L 23513712 2L 18951241..18951346 271..166 530 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:48:28 has no hits.

BS14409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:41 Download gff for BS14409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10679-PA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:05 Download gff for BS14409.5prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..382 9..275 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:21 Download gff for BS14409.5prime
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 115..382 9..275 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:21 Download gff for BS14409.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18951236..18951346 166..275 98 <- Minus
2L 18951407..18951537 35..165 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:05 Download gff for BS14409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18951236..18951346 166..275 98 <- Minus
arm_2L 18951407..18951537 35..165 100 <- Minus

BS14409.complete Sequence

287 bp assembled on 2006-11-01

GenBank Submission: FJ637652

> BS14409.complete
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGTAAAAGCTTTCTAGACCAT

BS14409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-RB 255 CG10679-PB 1..255 17..271 1275 100 Plus
Nedd8-RA 255 CG10679-PA 1..255 17..271 1275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-RB 612 CG10679-RB 123..377 17..271 1275 100 Plus
Nedd8-RA 471 CG10679-RA 123..377 17..271 1275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18951406..18951539 166..33 670 100 Minus
2L 23513712 2L 18951241..18951346 271..166 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:39:39 has no hits.

BS14409.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:55 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:47 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:48 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 128..375 22..269 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:56 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 1..255 17..271 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:48 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
Nedd8-RA 128..375 22..269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:48 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18951243..18951346 166..269 100 <- Minus
2L 18951407..18951539 33..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:48 Download gff for BS14409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18951243..18951346 166..269 100 <- Minus
arm_2L 18951407..18951539 33..165 100   Minus

BS14409.pep Sequence

Translation from 16 to 270

> BS14409.pep
MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQM
NDDKTAADYKVQGGSVLHLVLALRGGDSILTPCV*

BS14409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Nedd8-PB 84 CG10679-PB 1..84 1..84 424 100 Plus
Nedd8-PA 84 CG10679-PA 1..84 1..84 424 100 Plus
RpL40-PB 128 CG2960-PB 1..76 1..76 245 57.9 Plus
RpL40-PA 128 CG2960-PA 1..76 1..76 245 57.9 Plus
RpS27A-PA 156 CG5271-PA 1..76 1..76 245 57.9 Plus