Clone Sequence Records
BS14409.3prime Sequence
285 bp (285 high quality bases) assembled on 2006-10-13
> BS14409.3prime
ATGGTCTAGAAAGCTTTTACACACAAGGTGTTAGGATTGAATCACCTCCT
CGCAGAGCCAATACCAAGTGAAGAACGGATCCACCTTGCACTTTGTAGTC
CGCCGCGGTTTTATCGTCATTCATTTGCTTGCCGGAGAAAATAAGACGCT
GTTGCTGGGGCGGAATGCCTTCCTTTTCCTCCACGCGCTCCTTGATGCGA
TCTACCTTGTCCGTGGGCTCAATGTCGATCTCGATTTCCTTGCCGGTCAG
GGTCTTCACTTTGATCAACATGTCGACTGATAACT
BS14409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10679-PA | 255 | Nedd8-RA | 1..255 | 271..17 | 1275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nedd8-RB | 612 | CG10679-RB | 123..377 | 271..17 | 1275 | 100 | Minus |
Nedd8-RA | 471 | CG10679-RA | 123..377 | 271..17 | 1275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18951406..18951539 | 122..255 | 670 | 100 | Plus |
2L | 23513712 | 2L | 18951241..18951346 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:44:06 has no hits.
BS14409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:40 Download gff for
BS14409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10679-PA | 1..255 | 17..271 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:40 Download gff for
BS14409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 115..382 | 13..279 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:36 Download gff for
BS14409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 115..382 | 13..279 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:36 Download gff for
BS14409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18951236..18951346 | 13..122 | 98 | <- | Plus |
2L | 18951407..18951537 | 123..253 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:40 Download gff for
BS14409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18951236..18951346 | 13..122 | 98 | <- | Plus |
arm_2L | 18951407..18951537 | 123..253 | 100 | <- | Plus |
BS14409.5prime Sequence
285 bp (285 high quality bases) assembled on 2006-10-13
> BS14409.5prime
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGTAAAAGCTTTCTAGACC
BS14409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10679-PA | 255 | Nedd8-RA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nedd8-RB | 612 | CG10679-RB | 123..377 | 17..271 | 1275 | 100 | Plus |
Nedd8-RA | 471 | CG10679-RA | 123..377 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18951406..18951539 | 166..33 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18951241..18951346 | 271..166 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:48:28 has no hits.
BS14409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:41 Download gff for
BS14409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10679-PA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:05 Download gff for
BS14409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 115..382 | 9..275 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:21 Download gff for
BS14409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 115..382 | 9..275 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:21 Download gff for
BS14409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18951236..18951346 | 166..275 | 98 | <- | Minus |
2L | 18951407..18951537 | 35..165 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:05 Download gff for
BS14409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18951236..18951346 | 166..275 | 98 | <- | Minus |
arm_2L | 18951407..18951537 | 35..165 | 100 | <- | Minus |
BS14409.complete Sequence
287 bp assembled on 2006-11-01
GenBank Submission: FJ637652
> BS14409.complete
GAAGTTATCAGTCGACATGTTGATCAAAGTGAAGACCCTGACCGGCAAGG
AAATCGAGATCGACATTGAGCCCACGGACAAGGTAGATCGCATCAAGGAG
CGCGTGGAGGAAAAGGAAGGCATTCCGCCCCAGCAACAGCGTCTTATTTT
CTCCGGCAAGCAAATGAATGACGATAAAACCGCGGCGGACTACAAAGTGC
AAGGTGGATCCGTTCTTCACTTGGTATTGGCTCTGCGAGGAGGTGATTCA
ATCCTAACACCTTGTGTGTAAAAGCTTTCTAGACCAT
BS14409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nedd8-RB | 255 | CG10679-PB | 1..255 | 17..271 | 1275 | 100 | Plus |
Nedd8-RA | 255 | CG10679-PA | 1..255 | 17..271 | 1275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nedd8-RB | 612 | CG10679-RB | 123..377 | 17..271 | 1275 | 100 | Plus |
Nedd8-RA | 471 | CG10679-RA | 123..377 | 17..271 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18951406..18951539 | 166..33 | 670 | 100 | Minus |
2L | 23513712 | 2L | 18951241..18951346 | 271..166 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:39:39 has no hits.
BS14409.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:55 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:47 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:48 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 128..375 | 22..269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:56 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 1..255 | 17..271 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:48 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nedd8-RA | 128..375 | 22..269 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:48 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18951243..18951346 | 166..269 | 100 | <- | Minus |
2L | 18951407..18951539 | 33..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:48 Download gff for
BS14409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18951243..18951346 | 166..269 | 100 | <- | Minus |
arm_2L | 18951407..18951539 | 33..165 | 100 | | Minus |
BS14409.pep Sequence
Translation from 16 to 270
> BS14409.pep
MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQM
NDDKTAADYKVQGGSVLHLVLALRGGDSILTPCV*
BS14409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nedd8-PB | 84 | CG10679-PB | 1..84 | 1..84 | 424 | 100 | Plus |
Nedd8-PA | 84 | CG10679-PA | 1..84 | 1..84 | 424 | 100 | Plus |
RpL40-PB | 128 | CG2960-PB | 1..76 | 1..76 | 245 | 57.9 | Plus |
RpL40-PA | 128 | CG2960-PA | 1..76 | 1..76 | 245 | 57.9 | Plus |
RpS27A-PA | 156 | CG5271-PA | 1..76 | 1..76 | 245 | 57.9 | Plus |