Clone Sequence Records
BS14411.3prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-13
> BS14411.3prime
ATGGTCTAGAAAGCTTCTATTTGGGTGCGAACAAGATCTTGCCGCGCATG
TGATCGGGCAGCGGCACGGTTCCGGGACAGGGCACCTGGCCGGGGATCTC
GCAGATGCAGTGCCTGCCGCATCCGTAGCCAAAGTTGGCCGGATTGTCCT
TGCTCTCCTTTAGGCGCTCCTCTGCGTCCAGTTGCTCCCGGGTTTTGCCC
ACCACCTTAACCAGGTGATCGATGATGTCGTTCCGATTCCGACTGTCCAA
ATCTATAAGCATATCGCGTCCATCGTCGAAGTAGCAGCGCACAAACGGCG
AGGGCGTCATGTTCTTCAGCGTGAGCACCTGGACCTCGGGATTCTTGAAC
TGGATCTGCGGTATGTTCCAGAAAACAAAGTCCCGAGCGCCCGCGTGATG
AGCACCATATGTGTTGTAGTTCACGCTGAAAATGCGCACCTTGTCCTTCA
GCACCAGCTTACCGGCATTCAGATACTTCAGGGTGCGGCGGATGGGCTCA
CGGCCCTTCATGAACGGCATGTCGACTGATAACT
BS14411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14413-PA | 504 | mRpS25-RA | 1..504 | 520..17 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..594 | 520..16 | 2525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 188..384 | 985 | 100 | Plus |
X | 23542271 | X | 14582183..14582356 | 16..189 | 870 | 100 | Plus |
X | 23542271 | X | 14582756..14582893 | 383..520 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:35 has no hits.
BS14411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:42 Download gff for
BS14411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14413-PA | 1..504 | 17..520 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:54 Download gff for
BS14411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..598 | 11..532 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:45 Download gff for
BS14411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..598 | 11..532 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:45 Download gff for
BS14411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582179..14582355 | 11..188 | 98 | <- | Plus |
X | 14582499..14582693 | 189..383 | 100 | <- | Plus |
X | 14582757..14582906 | 384..532 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:54 Download gff for
BS14411.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476212..14476388 | 11..188 | 98 | <- | Plus |
arm_X | 14476532..14476726 | 189..383 | 100 | <- | Plus |
arm_X | 14476790..14476939 | 384..532 | 96 | | Plus |
BS14411.5prime Sequence
534 bp (534 high quality bases) assembled on 2006-10-13
> BS14411.5prime
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAATAGAAGCTTTCTAGACC
BS14411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14413-PA | 504 | mRpS25-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..594 | 17..521 | 2525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 349..153 | 985 | 100 | Minus |
X | 23542271 | X | 14582183..14582356 | 521..348 | 870 | 100 | Minus |
X | 23542271 | X | 14582756..14582893 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:43:01 has no hits.
BS14411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:43 Download gff for
BS14411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14413-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:50 Download gff for
BS14411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..598 | 5..526 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:56 Download gff for
BS14411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 77..598 | 5..526 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:56 Download gff for
BS14411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582179..14582355 | 349..526 | 98 | <- | Minus |
X | 14582499..14582693 | 154..348 | 100 | <- | Minus |
X | 14582757..14582906 | 5..153 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:50 Download gff for
BS14411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476212..14476388 | 349..526 | 98 | <- | Minus |
arm_X | 14476532..14476726 | 154..348 | 100 | <- | Minus |
arm_X | 14476790..14476939 | 5..153 | 96 | | Minus |
BS14411.complete Sequence
536 bp assembled on 2006-11-01
GenBank Submission: FJ637653
> BS14411.complete
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAATAGAAGCTTTCTAGACCAT
BS14411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 504 | CG14413-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-RA | 641 | CG14413-RA | 90..594 | 17..521 | 2525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14582498..14582694 | 349..153 | 985 | 100 | Minus |
X | 23542271 | X | 14582183..14582356 | 521..348 | 870 | 100 | Minus |
X | 23542271 | X | 14582756..14582893 | 154..17 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:15:36 has no hits.
BS14411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:13 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:03 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:43 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 90..587 | 17..514 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:13 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:13 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS25-RA | 90..587 | 17..514 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:13 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14582190..14582355 | 349..514 | 100 | <- | Minus |
X | 14582499..14582693 | 154..348 | 100 | <- | Minus |
X | 14582757..14582893 | 17..153 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:43 Download gff for
BS14411.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14476223..14476388 | 349..514 | 100 | <- | Minus |
arm_X | 14476532..14476726 | 154..348 | 100 | <- | Minus |
arm_X | 14476790..14476926 | 17..153 | 100 | | Minus |
BS14411.pep Sequence
Translation from 16 to 519
> BS14411.pep
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPK*
BS14411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS25-PA | 167 | CG14413-PA | 1..167 | 1..167 | 909 | 100 | Plus |