Clone BS14411 Report

Search the DGRC for BS14411

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS25-RA
Protein status:BS14411.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14411.3prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-13

> BS14411.3prime
ATGGTCTAGAAAGCTTCTATTTGGGTGCGAACAAGATCTTGCCGCGCATG
TGATCGGGCAGCGGCACGGTTCCGGGACAGGGCACCTGGCCGGGGATCTC
GCAGATGCAGTGCCTGCCGCATCCGTAGCCAAAGTTGGCCGGATTGTCCT
TGCTCTCCTTTAGGCGCTCCTCTGCGTCCAGTTGCTCCCGGGTTTTGCCC
ACCACCTTAACCAGGTGATCGATGATGTCGTTCCGATTCCGACTGTCCAA
ATCTATAAGCATATCGCGTCCATCGTCGAAGTAGCAGCGCACAAACGGCG
AGGGCGTCATGTTCTTCAGCGTGAGCACCTGGACCTCGGGATTCTTGAAC
TGGATCTGCGGTATGTTCCAGAAAACAAAGTCCCGAGCGCCCGCGTGATG
AGCACCATATGTGTTGTAGTTCACGCTGAAAATGCGCACCTTGTCCTTCA
GCACCAGCTTACCGGCATTCAGATACTTCAGGGTGCGGCGGATGGGCTCA
CGGCCCTTCATGAACGGCATGTCGACTGATAACT

BS14411.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14413-PA 504 mRpS25-RA 1..504 520..17 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..594 520..16 2525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 188..384 985 100 Plus
X 23542271 X 14582183..14582356 16..189 870 100 Plus
X 23542271 X 14582756..14582893 383..520 690 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:51:35 has no hits.

BS14411.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:42 Download gff for BS14411.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14413-PA 1..504 17..520 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:54 Download gff for BS14411.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..598 11..532 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:45 Download gff for BS14411.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..598 11..532 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:45 Download gff for BS14411.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14582179..14582355 11..188 98 <- Plus
X 14582499..14582693 189..383 100 <- Plus
X 14582757..14582906 384..532 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:54 Download gff for BS14411.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476212..14476388 11..188 98 <- Plus
arm_X 14476532..14476726 189..383 100 <- Plus
arm_X 14476790..14476939 384..532 96   Plus

BS14411.5prime Sequence

534 bp (534 high quality bases) assembled on 2006-10-13

> BS14411.5prime
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAATAGAAGCTTTCTAGACC

BS14411.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG14413-PA 504 mRpS25-RA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:03
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..594 17..521 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 349..153 985 100 Minus
X 23542271 X 14582183..14582356 521..348 870 100 Minus
X 23542271 X 14582756..14582893 154..17 690 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:43:01 has no hits.

BS14411.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:43 Download gff for BS14411.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14413-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:50 Download gff for BS14411.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..598 5..526 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:56 Download gff for BS14411.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 77..598 5..526 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:56 Download gff for BS14411.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14582179..14582355 349..526 98 <- Minus
X 14582499..14582693 154..348 100 <- Minus
X 14582757..14582906 5..153 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:50 Download gff for BS14411.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476212..14476388 349..526 98 <- Minus
arm_X 14476532..14476726 154..348 100 <- Minus
arm_X 14476790..14476939 5..153 96   Minus

BS14411.complete Sequence

536 bp assembled on 2006-11-01

GenBank Submission: FJ637653

> BS14411.complete
GAAGTTATCAGTCGACATGCCGTTCATGAAGGGCCGTGAGCCCATCCGCC
GCACCCTGAAGTATCTGAATGCCGGTAAGCTGGTGCTGAAGGACAAGGTG
CGCATTTTCAGCGTGAACTACAACACATATGGTGCTCATCACGCGGGCGC
TCGGGACTTTGTTTTCTGGAACATACCGCAGATCCAGTTCAAGAATCCCG
AGGTCCAGGTGCTCACGCTGAAGAACATGACGCCCTCGCCGTTTGTGCGC
TGCTACTTCGACGATGGACGCGATATGCTTATAGATTTGGACAGTCGGAA
TCGGAACGACATCATCGATCACCTGGTTAAGGTGGTGGGCAAAACCCGGG
AGCAACTGGACGCAGAGGAGCGCCTAAAGGAGAGCAAGGACAATCCGGCC
AACTTTGGCTACGGATGCGGCAGGCACTGCATCTGCGAGATCCCCGGCCA
GGTGCCCTGTCCCGGAACCGTGCCGCTGCCCGATCACATGCGCGGCAAGA
TCTTGTTCGCACCCAAATAGAAGCTTTCTAGACCAT

BS14411.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 504 CG14413-PA 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-RA 641 CG14413-RA 90..594 17..521 2525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14582498..14582694 349..153 985 100 Minus
X 23542271 X 14582183..14582356 521..348 870 100 Minus
X 23542271 X 14582756..14582893 154..17 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:36 has no hits.

BS14411.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:13 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:03 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:43 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 90..587 17..514 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:13 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:13 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS25-RA 90..587 17..514 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:13 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
X 14582190..14582355 349..514 100 <- Minus
X 14582499..14582693 154..348 100 <- Minus
X 14582757..14582893 17..153 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:43 Download gff for BS14411.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14476223..14476388 349..514 100 <- Minus
arm_X 14476532..14476726 154..348 100 <- Minus
arm_X 14476790..14476926 17..153 100   Minus

BS14411.pep Sequence

Translation from 16 to 519

> BS14411.pep
MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVF
WNIPQIQFKNPEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDII
DHLVKVVGKTREQLDAEERLKESKDNPANFGYGCGRHCICEIPGQVPCPG
TVPLPDHMRGKILFAPK*

BS14411.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS25-PA 167 CG14413-PA 1..167 1..167 909 100 Plus