Clone BS14413 Report

Search the DGRC for BS14413

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptObp19c-RA
Protein status:BS14413.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14413.3prime Sequence

558 bp (558 high quality bases) assembled on 2006-10-13

> BS14413.3prime
ATGGTCTAGAAAGCTTCTACCAGACCAGCTTTACGTTGTTGCGCTCCAGC
TGGCGACTGATGCACTGGTTGAAGAGGTGGGCCACCTCGCAGGGGTTCTT
CGAGGAGATGCCGCGGCTGCAGGCCTGCGCCATGCTGGAGCTAACGGCGA
TGGCCATCTTGTTGTCCTGGGTCACCAGGCTGGTCAGCTTCTCCACCTGG
CCAACGTTCAGCTTGTTGTCGGCGTCCATCAACTTGATCTTCTTGAGCAC
GCACTCCACCAGGCACTTCTCCTTCTCACTTGGATTGGTCACCTTCCCCA
GCGGTCGCTGGTCCCTGGGCAGCTGCAGCTTCTGGATGCACTCCATCCTG
GCCGCGGTGACCAGCTCCTGCACCTGCGGCAAGTTGCGATCGATTACCGC
CCAGATGGGCTCCGTTCCGGTCTTGGGCAGCAGCTTGGCGAGATCGAAAG
CCTGGGTCTGGCCACGGACGCAGTGCGTCTGCAGCAGGACAGCGACCACT
ATCGTCATTAGCGGAATGGCTGCGACTGGAGTGGATGGCTTCATGTCGAC
TGATAACT

BS14413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15457-PA 528 Obp19c-RA 1..528 544..17 2640 100 Minus
CG15457-PB 594 Obp19c-RB 1..315 544..230 1575 100 Minus
CG15457-PB 594 Obp19c-RB 381..594 230..17 1070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..539 544..16 2645 100 Minus
Obp19c-RA 978 CG15457-RA 200..728 544..16 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 230..544 1575 100 Plus
X 23542271 X 20418171..20418385 16..230 1075 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:04:44 has no hits.

BS14413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:45 Download gff for BS14413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15457-PA 1..528 17..544 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:48 Download gff for BS14413.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 8..544 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:18:53 Download gff for BS14413.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 8..544 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:18:53 Download gff for BS14413.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20418163..20418384 8..229 98 <- Plus
X 20418451..20418765 230..544 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:48 Download gff for BS14413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289190..20289411 8..229 98 <- Plus
arm_X 20289478..20289792 230..544 100   Plus

BS14413.5prime Sequence

558 bp (558 high quality bases) assembled on 2006-10-13

> BS14413.5prime
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGTAGAAGCTT
TCTAGACC

BS14413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15457-PA 528 Obp19c-RA 1..528 17..544 2640 100 Plus
CG15457-PB 594 Obp19c-RB 1..315 17..331 1575 100 Plus
CG15457-PB 594 Obp19c-RB 381..594 331..544 1070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:04:53
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..539 17..545 2645 100 Plus
Obp19c-RA 978 CG15457-RA 200..728 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 331..17 1575 100 Minus
X 23542271 X 20418171..20418385 545..331 1075 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:04:52 has no hits.

BS14413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:45 Download gff for BS14413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15457-PA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:51 Download gff for BS14413.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 17..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:07 Download gff for BS14413.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 17..553 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:07 Download gff for BS14413.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20418163..20418384 332..553 98 <- Minus
X 20418451..20418765 17..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:51 Download gff for BS14413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289190..20289411 332..553 98 <- Minus
arm_X 20289478..20289792 17..331 100   Minus

BS14413.complete Sequence

560 bp assembled on 2006-11-01

GenBank Submission: FJ637654

> BS14413.complete
GAAGTTATCAGTCGACATGAAGCCATCCACTCCAGTCGCAGCCATTCCGC
TAATGACGATAGTGGTCGCTGTCCTGCTGCAGACGCACTGCGTCCGTGGC
CAGACCCAGGCTTTCGATCTCGCCAAGCTGCTGCCCAAGACCGGAACGGA
GCCCATCTGGGCGGTAATCGATCGCAACTTGCCGCAGGTGCAGGAGCTGG
TCACCGCGGCCAGGATGGAGTGCATCCAGAAGCTGCAGCTGCCCAGGGAC
CAGCGACCGCTGGGGAAGGTGACCAATCCAAGTGAGAAGGAGAAGTGCCT
GGTGGAGTGCGTGCTCAAGAAGATCAAGTTGATGGACGCCGACAACAAGC
TGAACGTTGGCCAGGTGGAGAAGCTGACCAGCCTGGTGACCCAGGACAAC
AAGATGGCCATCGCCGTTAGCTCCAGCATGGCGCAGGCCTGCAGCCGCGG
CATCTCCTCGAAGAACCCCTGCGAGGTGGCCCACCTCTTCAACCAGTGCA
TCAGTCGCCAGCTGGAGCGCAACAACGTAAAGCTGGTCTGGTAGAAGCTT
TCTAGACCAT

BS14413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 528 CG15457-PC 1..528 17..544 2640 100 Plus
Obp19c-RA 528 CG15457-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-RC 789 CG15457-RC 11..539 17..545 2645 100 Plus
Obp19c-RA 978 CG15457-RA 200..728 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20418451..20418765 331..17 1575 100 Minus
X 23542271 X 20418171..20418385 545..331 1075 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:00:06 has no hits.

BS14413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:42 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 1..528 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:37 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 17..553 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:21 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..727 17..544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:42 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..736 17..553 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:31 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
Obp19c-RA 200..727 17..544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:31 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
X 20418172..20418384 332..544 100 <- Minus
X 20418451..20418765 17..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:21 Download gff for BS14413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20289199..20289411 332..544 100 <- Minus
arm_X 20289478..20289792 17..331 100   Minus

BS14413.pep Sequence

Translation from 16 to 543

> BS14413.pep
MKPSTPVAAIPLMTIVVAVLLQTHCVRGQTQAFDLAKLLPKTGTEPIWAV
IDRNLPQVQELVTAARMECIQKLQLPRDQRPLGKVTNPSEKEKCLVECVL
KKIKLMDADNKLNVGQVEKLTSLVTQDNKMAIAVSSSMAQACSRGISSKN
PCEVAHLFNQCISRQLERNNVKLVW*

BS14413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19c-PC 175 CG15457-PC 1..175 1..175 892 100 Plus
Obp19c-PA 175 CG15457-PA 1..175 1..175 892 100 Plus