Clone Sequence Records
BS14418.3prime Sequence
734 bp (684 high quality bases) assembled on 2006-10-13
> BS14418.3prime
ATGGTCTAGAAAGCTTCTACTTATGACTATGTTGGTTAGAGAGGAAGGCG
AGGTGACCCTTGGGACACTTGTTCGCGTAGTGGCCCTTGTTCCCGCACTT
GTAGCAGGTGATCTCCTCCAGGGGCGTGGGCACCTTGACGAAGCCGGGAC
CATGCGGCTGACTGTGGTGATTGGATTGCATGTCATCGGCACCCTCGATG
TGGCCGGAGTGTCCAGAGTAGCCGCCCGAGTGTCCGCCGGAGTGATCCAT
TGCGTTGATATTGTTGCGATGCTCCAGGCTGCCCACATACTGCTTGCACG
AGTTGGCCTTGTGGCCCAGCTCGCCGCAATAGTGGCACGTGGGCAGTTTC
TTGTGCAGCTGATCCTTACCCAGTTCCGCCAGCGGGGGCAGCTCGAAGTG
CGGATGCATGTGCTTGCAGGACGGGCCCTCGGGGCAGAAGCCGGCTAGGT
AGTCCATGCACAGGACACGGCGCAGATGCTGGTGCCGGCAGTGGGGACCG
TGGCGGCAGAAGCCTCTCTTGTACCACGGACAATCCTTCACCTTGCTCTG
CGGGTCGATGTGCAAAAAGGGACACTCTTTGTTGTGGCAGGCGTTGAACC
TCGAGTAGAATTAGCACTCGGGCATCTTGGTCATGTCGTACTCGTGCAGG
AACTCGCACTGGTCGCCCTTCTTGCACAGTCCTCTCAGCCAGTGCTTGCA
CACAATCGTCCGGTCCCCGCGAATGTGACGGAAG
BS14418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3642-PA | 891 | Clp-RA | 174..891 | 734..17 | 3515 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 289..1006 | 734..17 | 3545 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820252..820969 | 734..17 | 3545 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:48:55 has no hits.
BS14418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:48 Download gff for
BS14418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3642-PA | 174..891 | 17..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:08 Download gff for
BS14418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 289..1012 | 12..734 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:23 Download gff for
BS14418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 289..1012 | 12..734 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:23 Download gff for
BS14418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820252..820975 | 12..734 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:08 Download gff for
BS14418.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820252..820975 | 12..734 | 99 | | Minus |
BS14418.5prime Sequence
827 bp (803 high quality bases) assembled on 2006-10-13
> BS14418.5prime
GAAGTTATCAGTCGACATGGACATCCTTTTGGCCAACGTAAGTGGGCTGC
AGTTCAAGGCGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTG
CCGTTCTACGGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCAC
CAGGAACGGACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACA
TTCGCGGGGACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGC
AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGAT
GCCCGAGTGCTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGT
GTCCCTTTTTGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGG
TACAAGAGAGGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCT
GCGCCGTGTCCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCC
CGTCCTGCAAGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAA
CTGGGTAAGGATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGG
CGAGCTGGGCCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGG
AGCATCGCAACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGC
GGCTACTCTGGACACTCCGGCCACATCGAGGGTGCCGATGACATGCAATC
CAATCACCACAGTCAGCCGCATGGTCCCGGCTTCGTCAAGGTGCCCACGC
CCCTGGAGGAGATCACCTGCTACAAGT
BS14418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3642-PA | 891 | Clp-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 116..926 | 17..827 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820079..820889 | 17..827 | 4055 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:07:55 has no hits.
BS14418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:48 Download gff for
BS14418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3642-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:34 Download gff for
BS14418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..926 | 7..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:09 Download gff for
BS14418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..926 | 7..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:09 Download gff for
BS14418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820068..820889 | 7..827 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:34 Download gff for
BS14418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820068..820889 | 7..827 | 99 | | Plus |
BS14418.complete Sequence
923 bp assembled on 2006-11-01
GenBank Submission: FJ637655
> BS14418.complete
GAAGTTATCAGTCGACATGGACATCCTTTTGGCCAACGTAAGTGGGCTGC
AGTTCAAGGCGGAGCGGGACCTCATCGAGCAGGTGGGTGCCATCCCGCTG
CCGTTCTACGGCATGGACAAGTCCATTGCGGCGGTCTGCAACTTCATCAC
CAGGAACGGACAGGAGTGCGACAAAGGGAGCGCCTGTCCCTTCCGACACA
TTCGCGGGGACCGGACGATCGTGTGCAAGCACTGGCTGAGAGGACTGTGC
AAGAAGGGCGACCAGTGCGAGTTCCTGCACGAGTACGACATGACCAAGAT
GCCCGAGTGCTACTTCTACTCGAGGTTCAACGCCTGCCACAACAAAGAGT
GTCCCTTTTTGCACATCGACCCGCAGAGCAAGGTGAAGGATTGTCCGTGG
TACAAGAGAGGCTTCTGCCGCCACGGTCCCCACTGCCGGCACCAGCATCT
GCGCCGTGTCCTGTGCATGGACTACCTAGCCGGCTTCTGCCCCGAGGGCC
CGTCCTGCAAGCACATGCATCCGCACTTCGAGCTGCCCCCGCTGGCGGAA
CTGGGTAAGGATCAGCTGCACAAGAAACTGCCCACGTGCCACTATTGCGG
CGAGCTGGGCCACAAGGCCAACTCGTGCAAGCAGTATGTGGGCAGCCTGG
AGCATCGCAACAATATCAACGCAATGGATCACTCCGGCGGACACTCGGGC
GGCTACTCTGGACACTCCGGCCACATCGAGGGTGCCGATGACATGCAATC
CAATCACCACAGTCAGCCGCATGGTCCCGGCTTCGTCAAGGTGCCCACGC
CCCTGGAGGAGATCACCTGCTACAAGTGCGGGAACAAGGGCCACTACGCG
AACAAGTGTCCCAAGGGTCACCTCGCCTTCCTCTCTAACCAACATAGTCA
TAAGTAGAAGCTTTCTAGACCAT
BS14418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 891 | CG3642-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-RA | 1246 | CG3642-RA | 116..1006 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 820079..820969 | 17..907 | 4455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:03:27 has no hits.
BS14418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:56 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:05 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..1012 | 7..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:21 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 116..1006 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:56 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 105..1012 | 7..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:20 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Clp-RA | 116..1006 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:20 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 820079..820969 | 17..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:21 Download gff for
BS14418.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 820079..820969 | 17..907 | 100 | | Plus |
BS14418.pep Sequence
Translation from 16 to 906
> BS14418.pep
MDILLANVSGLQFKAERDLIEQVGAIPLPFYGMDKSIAAVCNFITRNGQE
CDKGSACPFRHIRGDRTIVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYF
YSRFNACHNKECPFLHIDPQSKVKDCPWYKRGFCRHGPHCRHQHLRRVLC
MDYLAGFCPEGPSCKHMHPHFELPPLAELGKDQLHKKLPTCHYCGELGHK
ANSCKQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHHSQ
PHGPGFVKVPTPLEEITCYKCGNKGHYANKCPKGHLAFLSNQHSHK*
BS14418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Clp-PA | 296 | CG3642-PA | 1..296 | 1..296 | 1713 | 100 | Plus |
