Clone BS14419 Report

Search the DGRC for BS14419

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptGstD8-RA
Protein status:BS14419.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14419.3prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14419.3prime
ATGGTCTAGAAAGCTTTCATTCATTCCTCTCCTGGACAAGTTTCTTGATT
AGCTGTACACCGTCCCAGTTCTCTTCCCAACCGGGAGTCACTTCCTTGGC
ATTCTCGTACCACCTGGCCACATTTGGATACTGGGCTATATCGAAGTCCA
CCACCTCAAAGGTGGAAACGGAGGCCAACAGGGCAATGTCGGCAATGGTG
AGGCAGTCGCCAGCCACATACTCCTGGTCCTCCAGGAAGGTGTCCAGGTG
GCCAAAGGCGCTGTCCACTTTCTGCATGGCCTCTGGATCGGCGGGATGAT
TATTCCTTATCTGTGGATAGATGGCCTCGACGAAACTCTGAAACAGGGTG
CCCATGTCGAAGTAGAGCCTCTGATTGACCACAGCCTTCTTCTGGGGATC
GCTGGGATACAGCGAGTCATCAGCGCCGTACTTCTCCACCAAGTAAATCA
AAATGGCACGGGATTCCCAGATGGAGAAGCCATCGTCCACCAGGGTGGGA
ATGCAGTGCTGTGGATTGAGCTTCACAAACTCCGGCTTCAGTTGCTCCCC
GTCCATGACCTTCAATAGCTTCATATTCAGGTCAACTCCAAGGGCCTTGG
CTGTCATTATAACGGAGCGGCAAGGAGCCGAGCAAGGATGGTAGTAAAAG
TCCATGTCGACTGATAACT

BS14419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4421-PA 639 GstD8-RA 1..639 655..17 3195 100 Minus
CG4181-PA 648 GstD2-RA 116..203 540..453 215 89.7 Minus
CG4181-PA 648 GstD2-RA 412..450 244..206 170 97.4 Minus
CG18548-PA 633 GstD10-RA 547..595 112..64 145 91.8 Minus
CG12242-PA 651 GstD5-RA 116..204 540..452 145 86.5 Minus
CG10045-PA 630 GstD1-RA 543..595 116..64 140 90.5 Minus
CG10045-PB 630 GstD1-RB 543..595 116..64 140 90.5 Minus
CG4371-PA 675 GstD7-RA 259..325 409..343 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..667 656..17 3200 100 Minus
GstD1-RB 843 CG10045-RB 95..687 652..60 670 75 Minus
GstD1-RA 825 CG10045-RA 77..669 652..60 670 75 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380674 656..17 3200 100 Minus
3R 32079331 3R 12367973..12368565 60..652 670 74.2 Plus
3R 32079331 3R 12372052..12372590 601..63 595 74 Minus
3R 32079331 3R 12375818..12376361 601..58 455 72.2 Minus
3R 32079331 3R 12378654..12378870 556..343 375 79.3 Minus
3R 32079331 3R 12373113..12373385 624..352 360 75.5 Minus
3R 32079331 3R 12374188..12374464 620..344 320 74.4 Minus
3R 32079331 3R 12377277..12377484 550..343 260 75 Minus
3R 32079331 3R 12364951..12365074 64..187 245 79.8 Plus
3R 32079331 3R 12365219..12365436 332..549 190 72.5 Plus
Blast to na_te.dros performed on 2015-01-30 17:45:03 has no hits.

BS14419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:49 Download gff for BS14419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4421-PA 1..639 17..655 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:49 Download gff for BS14419.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..655 10..664 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:45 Download gff for BS14419.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 24..670 10..664 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:45 Download gff for BS14419.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12380031..12380677 10..664 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:49 Download gff for BS14419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205753..8206399 10..664 98   Minus

BS14419.5prime Sequence

669 bp (669 high quality bases) assembled on 2006-10-13

> BS14419.5prime
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AATGAAAGCTTTCTAGACC

BS14419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4421-PA 639 GstD8-RA 1..639 17..655 3195 100 Plus
CG4181-PA 648 GstD2-RA 116..203 132..219 215 89.7 Plus
CG4181-PA 648 GstD2-RA 412..450 428..466 170 97.4 Plus
CG18548-PA 633 GstD10-RA 547..595 560..608 145 91.8 Plus
CG12242-PA 651 GstD5-RA 116..204 132..220 145 86.5 Plus
CG10045-PA 630 GstD1-RA 543..595 556..608 140 90.5 Plus
CG10045-PB 630 GstD1-RB 543..595 556..608 140 90.5 Plus
CG4371-PA 675 GstD7-RA 259..325 263..329 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..667 16..655 3200 100 Plus
GstD1-RB 843 CG10045-RB 95..687 20..612 670 75 Plus
GstD1-RA 825 CG10045-RA 77..669 20..612 670 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380674 16..655 3200 100 Plus
3R 32079331 3R 12367973..12368565 612..20 670 74.2 Minus
3R 32079331 3R 12372052..12372590 71..609 595 74 Plus
3R 32079331 3R 12375818..12376361 71..614 455 72.2 Plus
3R 32079331 3R 12378654..12378870 116..329 375 79.3 Plus
3R 32079331 3R 12373113..12373385 48..320 360 75.5 Plus
3R 32079331 3R 12374188..12374464 52..328 320 74.4 Plus
3R 32079331 3R 12377277..12377484 122..329 260 75 Plus
3R 32079331 3R 12364951..12365074 608..485 245 79.8 Minus
3R 32079331 3R 12365219..12365436 340..123 190 72.5 Minus
Blast to na_te.dros performed on 2015-02-12 11:05:06 has no hits.

BS14419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:49 Download gff for BS14419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4421-PA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:55 Download gff for BS14419.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..655 8..662 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:34 Download gff for BS14419.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 24..670 8..662 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:34 Download gff for BS14419.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12380031..12380677 8..662 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:55 Download gff for BS14419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205753..8206399 8..662 98   Plus

BS14419.complete Sequence

671 bp assembled on 2006-11-01

GenBank Submission: FJ637656

> BS14419.complete
GAAGTTATCAGTCGACATGGACTTTTACTACCATCCTTGCTCGGCTCCTT
GCCGCTCCGTTATAATGACAGCCAAGGCCCTTGGAGTTGACCTGAATATG
AAGCTATTGAAGGTCATGGACGGGGAGCAACTGAAGCCGGAGTTTGTGAA
GCTCAATCCACAGCACTGCATTCCCACCCTGGTGGACGATGGCTTCTCCA
TCTGGGAATCCCGTGCCATTTTGATTTACTTGGTGGAGAAGTACGGCGCT
GATGACTCGCTGTATCCCAGCGATCCCCAGAAGAAGGCTGTGGTCAATCA
GAGGCTCTACTTCGACATGGGCACCCTGTTTCAGAGTTTCGTCGAGGCCA
TCTATCCACAGATAAGGAATAATCATCCCGCCGATCCAGAGGCCATGCAG
AAAGTGGACAGCGCCTTTGGCCACCTGGACACCTTCCTGGAGGACCAGGA
GTATGTGGCTGGCGACTGCCTCACCATTGCCGACATTGCCCTGTTGGCCT
CCGTTTCCACCTTTGAGGTGGTGGACTTCGATATAGCCCAGTATCCAAAT
GTGGCCAGGTGGTACGAGAATGCCAAGGAAGTGACTCCCGGTTGGGAAGA
GAACTGGGACGGTGTACAGCTAATCAAGAAACTTGTCCAGGAGAGGAATG
AATGAAAGCTTTCTAGACCAT

BS14419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 639 CG4421-PA 1..639 17..655 3195 100 Plus
GstD1-RB 630 CG10045-PB 7..599 20..612 670 74.2 Plus
GstD1-RA 630 CG10045-PA 7..599 20..612 670 74.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-RA 808 CG4421-RA 28..667 16..655 3200 100 Plus
GstD1-RB 843 CG10045-RB 95..687 20..612 670 74.2 Plus
GstD1-RA 825 CG10045-RA 77..669 20..612 670 74.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12380035..12380674 16..655 3200 100 Plus
3R 32079331 3R 12367973..12368565 612..20 670 74.2 Minus
3R 32079331 3R 12372052..12372590 71..609 595 74 Plus
3R 32079331 3R 12375818..12376361 71..614 455 72.2 Plus
3R 32079331 3R 12378654..12378870 116..329 375 79.3 Plus
3R 32079331 3R 12373113..12373385 48..320 360 75.5 Plus
3R 32079331 3R 12374188..12374464 52..328 320 74.4 Plus
3R 32079331 3R 12377277..12377484 122..329 260 75 Plus
3R 32079331 3R 12364951..12365074 608..485 245 79.8 Minus
3R 32079331 3R 12365219..12365436 340..123 190 72.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:11:43 has no hits.

BS14419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:58 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 1..639 17..655 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:07 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..655 8..662 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:49 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 14..651 17..654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:58 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 9..655 8..662 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:56 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
GstD8-RA 29..666 17..654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:56 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12380036..12380673 17..654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:49 Download gff for BS14419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8205758..8206395 17..654 100   Plus

BS14419.pep Sequence

Translation from 16 to 654

> BS14419.pep
MDFYYHPCSAPCRSVIMTAKALGVDLNMKLLKVMDGEQLKPEFVKLNPQH
CIPTLVDDGFSIWESRAILIYLVEKYGADDSLYPSDPQKKAVVNQRLYFD
MGTLFQSFVEAIYPQIRNNHPADPEAMQKVDSAFGHLDTFLEDQEYVAGD
CLTIADIALLASVSTFEVVDFDIAQYPNVARWYENAKEVTPGWEENWDGV
QLIKKLVQERNE*

BS14419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
GstD8-PA 212 CG4421-PA 1..212 1..212 1127 100 Plus
GstD2-PA 215 CG4181-PA 1..210 1..210 772 66.2 Plus
GstD1-PB 209 CG10045-PB 2..206 1..205 762 68.3 Plus
GstD1-PA 209 CG10045-PA 2..206 1..205 762 68.3 Plus
GstD5-PA 216 CG12242-PA 1..210 1..210 745 64.8 Plus