Clone BS14421 Report

Search the DGRC for BS14421

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCCAP-RA
Protein status:BS14421.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14421.5prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BS14421.5prime
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAATAAAAGCTTTCTAGACC

BS14421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4910-PA 468 Ccap-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 714 CG4910-RB 71..539 17..485 2345 100 Plus
CCAP-RA 1249 CG4910-RA 606..1074 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22700757..22701058 485..184 1510 100 Minus
3R 32079331 3R 22701369..22701479 127..17 555 100 Minus
3R 32079331 3R 22701103..22701167 192..128 325 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:58:01 has no hits.

BS14421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:49 Download gff for BS14421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4910-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:48 Download gff for BS14421.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1074 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:43 Download gff for BS14421.5prime
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 606..1074 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:43 Download gff for BS14421.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22700757..22701050 192..485 100 <- Minus
3R 22701104..22701167 128..191 100 <- Minus
3R 22701369..22701479 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:48 Download gff for BS14421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18526479..18526772 192..485 100 <- Minus
arm_3R 18526826..18526889 128..191 100 <- Minus
arm_3R 18527091..18527201 17..127 100   Minus

BS14421.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ637657

> BS14421.complete
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAATAAAAGCTTTCTAGACCAT

BS14421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 468 CG4910-PB 1..468 17..484 2340 100 Plus
CCAP-RA 468 CG4910-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-RB 714 CG4910-RB 71..539 17..485 2345 100 Plus
CCAP-RA 1249 CG4910-RA 606..1074 17..485 2345 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22700757..22701058 485..184 1510 100 Minus
3R 32079331 3R 22701369..22701479 127..17 555 100 Minus
3R 32079331 3R 22701103..22701167 192..128 325 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:17:11 has no hits.

BS14421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:59 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:09 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1074 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:46 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1071 17..482 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:59 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
Ccap-RA 606..1074 17..485 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:51 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
CCAP-RA 606..1071 17..482 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:51 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22700760..22701050 192..482 100 <- Minus
3R 22701104..22701167 128..191 100 <- Minus
3R 22701369..22701479 17..127 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:46 Download gff for BS14421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18526482..18526772 192..482 100 <- Minus
arm_3R 18526826..18526889 128..191 100 <- Minus
arm_3R 18527091..18527201 17..127 100   Minus

BS14421.pep Sequence

Translation from 16 to 483

> BS14421.pep
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESK*

BS14421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CCAP-PB 155 CG4910-PB 1..155 1..155 798 100 Plus
CCAP-PA 155 CG4910-PA 1..155 1..155 798 100 Plus