Clone Sequence Records
BS14421.5prime Sequence
498 bp (498 high quality bases) assembled on 2006-10-13
> BS14421.5prime
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAATAAAAGCTTTCTAGACC
BS14421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4910-PA | 468 | Ccap-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 714 | CG4910-RB | 71..539 | 17..485 | 2345 | 100 | Plus |
CCAP-RA | 1249 | CG4910-RA | 606..1074 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22700757..22701058 | 485..184 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 22701369..22701479 | 127..17 | 555 | 100 | Minus |
3R | 32079331 | 3R | 22701103..22701167 | 192..128 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:01 has no hits.
BS14421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:49 Download gff for
BS14421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4910-PA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:48 Download gff for
BS14421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1074 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:43 Download gff for
BS14421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCAP-RA | 606..1074 | 17..485 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:43 Download gff for
BS14421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22700757..22701050 | 192..485 | 100 | <- | Minus |
3R | 22701104..22701167 | 128..191 | 100 | <- | Minus |
3R | 22701369..22701479 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:48 Download gff for
BS14421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18526479..18526772 | 192..485 | 100 | <- | Minus |
arm_3R | 18526826..18526889 | 128..191 | 100 | <- | Minus |
arm_3R | 18527091..18527201 | 17..127 | 100 | | Minus |
BS14421.complete Sequence
500 bp assembled on 2006-11-01
GenBank Submission: FJ637657
> BS14421.complete
GAAGTTATCAGTCGACATGAGAACGTCCATGAGGATTTCCCTGAGGCTGC
TTGCACTCCTGGCTTGTGCCATTTGCTCTCAGGCTTCGCTGGAAAGGGAG
AACAACGAGGGCACCAATATGGCAAATCACAAGCTAAGTGGCGTTATACA
ATGGAAGTACGAGAAGCGACCGTTTTGCAATGCATTTACAGGCTGTGGAC
GAAAGCGTACGTATCCCTCGTATCCGCCATTCTCGCTATTCAAACGCAAC
GAAGTCGAAGAGAAACCCTATAACAATGAGTATTTATCCGAAGGTCTAAG
TGATTTGATCGATATCAATGCCGAGCCAGCTGTGGAAAATGTTCAAAAGC
AAATCATGTCGCAGGCCAAAATCTTCGAGGCCATCAAAGAAGCCAGCAAG
GAAATCTTTCGGCAAAAGAACAAACAGAAAATGTTGCAAAATGAAAAGGA
GATGCAGCAATTGGAGGAGCGCGAAAGCAAATAAAAGCTTTCTAGACCAT
BS14421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 468 | CG4910-PB | 1..468 | 17..484 | 2340 | 100 | Plus |
CCAP-RA | 468 | CG4910-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-RB | 714 | CG4910-RB | 71..539 | 17..485 | 2345 | 100 | Plus |
CCAP-RA | 1249 | CG4910-RA | 606..1074 | 17..485 | 2345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22700757..22701058 | 485..184 | 1510 | 100 | Minus |
3R | 32079331 | 3R | 22701369..22701479 | 127..17 | 555 | 100 | Minus |
3R | 32079331 | 3R | 22701103..22701167 | 192..128 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:17:11 has no hits.
BS14421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:59 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 1..468 | 17..484 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:09 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1074 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:46 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1071 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:59 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccap-RA | 606..1074 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:51 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CCAP-RA | 606..1071 | 17..482 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:51 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22700760..22701050 | 192..482 | 100 | <- | Minus |
3R | 22701104..22701167 | 128..191 | 100 | <- | Minus |
3R | 22701369..22701479 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:46 Download gff for
BS14421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18526482..18526772 | 192..482 | 100 | <- | Minus |
arm_3R | 18526826..18526889 | 128..191 | 100 | <- | Minus |
arm_3R | 18527091..18527201 | 17..127 | 100 | | Minus |
BS14421.pep Sequence
Translation from 16 to 483
> BS14421.pep
MRTSMRISLRLLALLACAICSQASLERENNEGTNMANHKLSGVIQWKYEK
RPFCNAFTGCGRKRTYPSYPPFSLFKRNEVEEKPYNNEYLSEGLSDLIDI
NAEPAVENVQKQIMSQAKIFEAIKEASKEIFRQKNKQKMLQNEKEMQQLE
ERESK*
BS14421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CCAP-PB | 155 | CG4910-PB | 1..155 | 1..155 | 798 | 100 | Plus |
CCAP-PA | 155 | CG4910-PA | 1..155 | 1..155 | 798 | 100 | Plus |