Clone Sequence Records
BS14427.3prime Sequence
456 bp (456 high quality bases) assembled on 2006-10-13
> BS14427.3prime
ATGGTCTAGAAAGCTTTTAGTACTGGTAGCCATAGGTCTGGGGCACGTAG
GCGCTGTACAGCTGCTGCTGGTGCTGGGGCACGCCGTAGTTGGGGGCGAC
GTAGGTGGCCACCGGGGAGGAGTAGGCGCCGGCGGATCCGTAGCTGGGAG
CTGGAGCGCTGCATGGCACGGGGGCAAGGTTGGGCTGGCAGCTGAACAGG
TAGTTCTTGGGGCAGGGAGGAGCTGGGATGCTGGAGCCGCCATAGCCGCC
GGAGCTGCCGCCGTAGGCAGACTTACGGAGACGGGTCAGGTCACCGAATC
CCTGTCCGGTCACTCCCTCCAGCTCTCCGTCCTGGGTGGTCACCGAGGAG
CCAGTGGAGCCGGTGGCCGAAGCCACGTTGGTGGGCGAAGCCAGAGCGGC
GGCGGCGAAGGCGACCAGAGCGATGCACACGAAGGATTTCATGTCGACTG
ATAACT
BS14427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9048-PA | 426 | Vm26Aa-RA | 1..426 | 442..17 | 2130 | 100 | Minus |
CG9271-PA | 360 | Vm34Ca-RA | 208..317 | 229..120 | 375 | 93.6 | Minus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 214..182 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..507 | 442..17 | 2130 | 100 | Minus |
Vm26Aa-RA | 641 | CG9048-RA | 82..507 | 442..17 | 2130 | 100 | Minus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 229..120 | 445 | 93.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959834..5960259 | 17..442 | 2130 | 100 | Plus |
2L | 23513712 | 2L | 13411269..13411378 | 120..229 | 445 | 93.6 | Plus |
2L | 23513712 | 2L | 5957432..5957527 | 214..119 | 255 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:18 has no hits.
BS14427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:00 Download gff for
BS14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9048-PA | 1..426 | 17..442 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:52 Download gff for
BS14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 13..450 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:48 Download gff for
BS14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 13..450 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:48 Download gff for
BS14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959832..5960267 | 13..450 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:52 Download gff for
BS14427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959832..5960267 | 13..450 | 98 | | Plus |
BS14427.5prime Sequence
456 bp (456 high quality bases) assembled on 2006-10-13
> BS14427.5prime
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACTAAAAGCTTTC
TAGACC
BS14427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9048-PA | 426 | Vm26Aa-RA | 1..426 | 17..442 | 2130 | 100 | Plus |
CG9271-PA | 360 | Vm34Ca-RA | 208..317 | 230..339 | 375 | 93.6 | Plus |
CG9046-PA | 507 | Vm26Ab-RA | 367..399 | 245..277 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..507 | 17..442 | 2130 | 100 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 82..507 | 17..442 | 2130 | 100 | Plus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 230..339 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959834..5960259 | 442..17 | 2130 | 100 | Minus |
2L | 23513712 | 2L | 13411269..13411378 | 339..230 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957432..5957527 | 245..340 | 255 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:51:49 has no hits.
BS14427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:01 Download gff for
BS14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9048-PA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:59 Download gff for
BS14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:17 Download gff for
BS14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 9..446 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:17 Download gff for
BS14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959832..5960267 | 9..446 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:59 Download gff for
BS14427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959832..5960267 | 9..446 | 98 | | Minus |
BS14427.complete Sequence
458 bp assembled on 2006-11-01
GenBank Submission: FJ637658
> BS14427.complete
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACTAAAAGCTTTC
TAGACCAT
BS14427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 426 | CG9048-PB | 1..426 | 17..442 | 2130 | 100 | Plus |
Vm26Aa-RA | 426 | CG9048-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
Vm34Ca-RA | 360 | CG9271-PA | 208..317 | 230..339 | 445 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-RB | 745 | CG9048-RB | 82..507 | 17..442 | 2130 | 100 | Plus |
Vm26Aa-RA | 641 | CG9048-RA | 82..507 | 17..442 | 2130 | 100 | Plus |
Vm34Ca-RA | 491 | CG9271-RA | 254..363 | 230..339 | 445 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5959834..5960259 | 442..17 | 2130 | 100 | Minus |
2L | 23513712 | 2L | 13411269..13411378 | 339..230 | 445 | 93.6 | Minus |
2L | 23513712 | 2L | 5957432..5957527 | 245..340 | 255 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:06:08 has no hits.
BS14427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:00 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 1..426 | 17..442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:10 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:11 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 82..505 | 17..440 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:00 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 74..509 | 9..446 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:33 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vm26Aa-RA | 82..505 | 17..440 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:33 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5959836..5960259 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:11 Download gff for
BS14427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5959836..5960259 | 17..440 | 100 | | Minus |
BS14427.pep Sequence
Translation from 16 to 441
> BS14427.pep
MKSFVCIALVAFAAAALASPTNVASATGSTGSSVTTQDGELEGVTGQGFG
DLTRLRKSAYGGSSGGYGGSSIPAPPCPKNYLFSCQPNLAPVPCSAPAPS
YGSAGAYSSPVATYVAPNYGVPQHQQQLYSAYVPQTYGYQY*
BS14427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vm26Aa-PB | 141 | CG9048-PB | 1..141 | 1..141 | 746 | 100 | Plus |
Vm26Aa-PA | 141 | CG9048-PA | 1..141 | 1..141 | 746 | 100 | Plus |
Vm34Ca-PA | 119 | CG9271-PA | 69..112 | 71..114 | 218 | 88.6 | Plus |
Vm26Ab-PB | 168 | CG9046-PB | 116..163 | 70..117 | 208 | 77.1 | Plus |
Vm26Ab-PA | 168 | CG9046-PA | 116..163 | 70..117 | 208 | 77.1 | Plus |