Clone BS14427 Report

Search the DGRC for BS14427

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptVm26Aa-RA
Protein status:BS14427.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14427.3prime Sequence

456 bp (456 high quality bases) assembled on 2006-10-13

> BS14427.3prime
ATGGTCTAGAAAGCTTTTAGTACTGGTAGCCATAGGTCTGGGGCACGTAG
GCGCTGTACAGCTGCTGCTGGTGCTGGGGCACGCCGTAGTTGGGGGCGAC
GTAGGTGGCCACCGGGGAGGAGTAGGCGCCGGCGGATCCGTAGCTGGGAG
CTGGAGCGCTGCATGGCACGGGGGCAAGGTTGGGCTGGCAGCTGAACAGG
TAGTTCTTGGGGCAGGGAGGAGCTGGGATGCTGGAGCCGCCATAGCCGCC
GGAGCTGCCGCCGTAGGCAGACTTACGGAGACGGGTCAGGTCACCGAATC
CCTGTCCGGTCACTCCCTCCAGCTCTCCGTCCTGGGTGGTCACCGAGGAG
CCAGTGGAGCCGGTGGCCGAAGCCACGTTGGTGGGCGAAGCCAGAGCGGC
GGCGGCGAAGGCGACCAGAGCGATGCACACGAAGGATTTCATGTCGACTG
ATAACT

BS14427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9048-PA 426 Vm26Aa-RA 1..426 442..17 2130 100 Minus
CG9271-PA 360 Vm34Ca-RA 208..317 229..120 375 93.6 Minus
CG9046-PA 507 Vm26Ab-RA 367..399 214..182 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..507 442..17 2130 100 Minus
Vm26Aa-RA 641 CG9048-RA 82..507 442..17 2130 100 Minus
Vm34Ca-RA 491 CG9271-RA 254..363 229..120 445 93.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959834..5960259 17..442 2130 100 Plus
2L 23513712 2L 13411269..13411378 120..229 445 93.6 Plus
2L 23513712 2L 5957432..5957527 214..119 255 84.4 Minus
Blast to na_te.dros performed on 2015-02-10 15:58:18 has no hits.

BS14427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:00 Download gff for BS14427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9048-PA 1..426 17..442 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:52 Download gff for BS14427.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 13..450 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:48 Download gff for BS14427.3prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 13..450 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:48 Download gff for BS14427.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5959832..5960267 13..450 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:52 Download gff for BS14427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959832..5960267 13..450 98   Plus

BS14427.5prime Sequence

456 bp (456 high quality bases) assembled on 2006-10-13

> BS14427.5prime
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACTAAAAGCTTTC
TAGACC

BS14427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9048-PA 426 Vm26Aa-RA 1..426 17..442 2130 100 Plus
CG9271-PA 360 Vm34Ca-RA 208..317 230..339 375 93.6 Plus
CG9046-PA 507 Vm26Ab-RA 367..399 245..277 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:51:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..507 17..442 2130 100 Plus
Vm26Aa-RA 641 CG9048-RA 82..507 17..442 2130 100 Plus
Vm34Ca-RA 491 CG9271-RA 254..363 230..339 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959834..5960259 442..17 2130 100 Minus
2L 23513712 2L 13411269..13411378 339..230 445 93.6 Minus
2L 23513712 2L 5957432..5957527 245..340 255 84.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:51:49 has no hits.

BS14427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:01 Download gff for BS14427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9048-PA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:59 Download gff for BS14427.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 9..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:17 Download gff for BS14427.5prime
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 9..446 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:17 Download gff for BS14427.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5959832..5960267 9..446 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:59 Download gff for BS14427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959832..5960267 9..446 98   Minus

BS14427.complete Sequence

458 bp assembled on 2006-11-01

GenBank Submission: FJ637658

> BS14427.complete
GAAGTTATCAGTCGACATGAAATCCTTCGTGTGCATCGCTCTGGTCGCCT
TCGCCGCCGCCGCTCTGGCTTCGCCCACCAACGTGGCTTCGGCCACCGGC
TCCACTGGCTCCTCGGTGACCACCCAGGACGGAGAGCTGGAGGGAGTGAC
CGGACAGGGATTCGGTGACCTGACCCGTCTCCGTAAGTCTGCCTACGGCG
GCAGCTCCGGCGGCTATGGCGGCTCCAGCATCCCAGCTCCTCCCTGCCCC
AAGAACTACCTGTTCAGCTGCCAGCCCAACCTTGCCCCCGTGCCATGCAG
CGCTCCAGCTCCCAGCTACGGATCCGCCGGCGCCTACTCCTCCCCGGTGG
CCACCTACGTCGCCCCCAACTACGGCGTGCCCCAGCACCAGCAGCAGCTG
TACAGCGCCTACGTGCCCCAGACCTATGGCTACCAGTACTAAAAGCTTTC
TAGACCAT

BS14427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 426 CG9048-PB 1..426 17..442 2130 100 Plus
Vm26Aa-RA 426 CG9048-PA 1..426 17..442 2130 100 Plus
Vm34Ca-RA 360 CG9271-PA 208..317 230..339 445 93.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-RB 745 CG9048-RB 82..507 17..442 2130 100 Plus
Vm26Aa-RA 641 CG9048-RA 82..507 17..442 2130 100 Plus
Vm34Ca-RA 491 CG9271-RA 254..363 230..339 445 93.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5959834..5960259 442..17 2130 100 Minus
2L 23513712 2L 13411269..13411378 339..230 445 93.6 Minus
2L 23513712 2L 5957432..5957527 245..340 255 84.4 Plus
Blast to na_te.dros performed on 2014-11-27 16:06:08 has no hits.

BS14427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:00 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 1..426 17..442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:10 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 9..446 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:11 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 82..505 17..440 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:00 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 74..509 9..446 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:33 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
Vm26Aa-RA 82..505 17..440 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:33 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5959836..5960259 17..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:11 Download gff for BS14427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5959836..5960259 17..440 100   Minus

BS14427.pep Sequence

Translation from 16 to 441

> BS14427.pep
MKSFVCIALVAFAAAALASPTNVASATGSTGSSVTTQDGELEGVTGQGFG
DLTRLRKSAYGGSSGGYGGSSIPAPPCPKNYLFSCQPNLAPVPCSAPAPS
YGSAGAYSSPVATYVAPNYGVPQHQQQLYSAYVPQTYGYQY*

BS14427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Vm26Aa-PB 141 CG9048-PB 1..141 1..141 746 100 Plus
Vm26Aa-PA 141 CG9048-PA 1..141 1..141 746 100 Plus
Vm34Ca-PA 119 CG9271-PA 69..112 71..114 218 88.6 Plus
Vm26Ab-PB 168 CG9046-PB 116..163 70..117 208 77.1 Plus
Vm26Ab-PA 168 CG9046-PA 116..163 70..117 208 77.1 Plus