Clone Sequence Records
BS14430.5prime Sequence
880 bp (735 high quality bases) assembled on 2006-10-13
> BS14430.5prime
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGTAGTCCGCCGTT
GATCGGCTGGAACGACTGGCCGGACGAGTTCACAAAGCGCCACGCCCTGC
GAGCTGACCTCGCAGCGAGGCTACGTGATCTACTCCTCGCTGGGCTCCTT
CTATATTCCGCTGGCCATCATGACGATCGT
BS14430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7485-PA | 1806 | TyrR-RA | 1..863 | 17..880 | 4255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oct-TyrR-RB | 3675 | CG7485-RB | 665..1527 | 17..880 | 4280 | 99.8 | Plus |
| Oct-TyrR-RA | 3682 | CG7485-RA | 672..1534 | 17..880 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22061962..22062502 | 339..880 | 2645 | 99.6 | Plus |
| 3L | 28110227 | 3L | 22061081..22061405 | 17..341 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:25:31 has no hits.
BS14430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:03 Download gff for
BS14430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7485-PA | 1..863 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:24 Download gff for
BS14430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..1534 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:39 Download gff for
BS14430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..1534 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:39 Download gff for
BS14430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22061081..22061404 | 17..340 | 100 | -> | Plus |
| 3L | 22061964..22062502 | 341..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:24 Download gff for
BS14430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22054181..22054504 | 17..340 | 100 | -> | Plus |
| arm_3L | 22055064..22055602 | 341..880 | 99 | | Plus |
BS14430.complete Sequence
1838 bp assembled on 2010-05-12
GenBank Submission: KX806492
> BS14430.complete
GAAGTTATCAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATG
TCACCACAACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGC
ACCACAAAGTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGA
TGACGATGCGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGC
TGGTGGAGGGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCG
GACAAGGACTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGC
CAGCATCCTGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCA
CCGCCCTGGTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATC
CTGGTGATTCTGAGTGTGTTCACCTACAAGCCGCTGCGCATCGTCCAGAA
CTTCTTCATAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGG
TGCTGCCCTTCAACGTGGCTTACTCGATCCTGGGGCGCTGGGAGTTCGGC
ATCCACCTGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAG
CTCCATCCTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTA
CGGACCCCATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTC
CTCATCTCCGGGGTGTGGCTACTTTCGCTGCTGATAAGTAGTCCGCCGTT
GATCGGCTGGAACGACTGGCCGGACGAGTTCACAAGCGCCACGCCCTGCG
AGCTGACCTCGCAGCGAGGCTACGTGATCTACTCCTCGCTGGGCTCCTTC
TTTATTCCGCTGGCCATCATGACGATCGTCTACATCGAGATCTTCGTGGC
CACGCGGCGCCGCCTAAGGGAGCGAGCCAGGGCCAACAAGCTTAACACGA
TCGCTCTGAAGTCCACTGAGCTCGAGCCGATGGCAAACTCCTCGCCCGTC
GCCGCCTCCAACTCCGGCTCCAAGTCGCGTCTCCTAGCCAGCTGGCTTTG
CTGCGGCCGGGATCGGGCCCAGTTCGCCACGCCTATGATCCAGAACGACC
AGGAGAGCATCAGCAGTGAAACCCACCAGCCGCAGGATTCCTCCAAAGCG
GGTCCCCATGGCAACAGCGATCCCCAACAGCAGCACGTGGTCGTGCTGGT
CAAGAAGTCGCGTCGCGCCAAGACCAAGGACTCCATTAAGCACGGCAAGA
CCCGTGGTGGCCGCAAGTCGCAGTCCTCGTCCACATGCGAGCCCCACGGC
GAGCAACAGCTCTTACCCGCCGGCGGGGATGGCGGTAGCTGCCAGCCCGG
CGGAGGCCACTCTGGAGGCGGAAAGTCGGACGCCGAGATCAGCACGGAGA
GCGGGAGCGATCCCAAAGGTTGCATACAGGTCTGCGTGACTCAGGCGGAC
GAGCAAACGTCCCTAAAGCTGACCCCGCCGCAATCCTCGACGGGAGTCGC
TGCCGTTTCTGTCACTCCGTTGCAGAAGAAGACTAGTGGGGTTAACCAGT
TCATTGAGGAGAAACAGAAGATCTCGCTTTCCAAGGAGCGGCGAGCGGCT
CGCACCCTGGGCATCATCATGGGCGTGTTCGTCATCTGCTGGCTGCCCTT
CTTCCTCATGTACGTCATTCTGCCCTTCTGCCAGACCTGCTGCCCCACGA
ACAAGTTCAAGAACTTCATCACCTGGCTGGGCTACATCAACTCGGGCCTG
AATCCGGTCATCTACACCATCTTCAACCTGGACTACCGCCGGGCCTTCAA
GCGACTTCTGGGCCTGAATTGAAAGCTTTCTAGACCAT
BS14430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oct-TyrR-RB | 1806 | CG7485-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| Oct-TyrR-RA | 1806 | CG7485-PA | 1..1806 | 17..1822 | 9030 | 100 | Plus |
| 5-HT1B-RE | 1890 | CG15113-PE | 1722..1800 | 1723..1801 | 230 | 86.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oct-TyrR-RB | 3675 | CG7485-RB | 665..2470 | 17..1822 | 9030 | 100 | Plus |
| Oct-TyrR-RA | 3682 | CG7485-RA | 672..2477 | 17..1822 | 9030 | 100 | Plus |
| 5-HT1B-RE | 4026 | CG15113-RE | 2634..2712 | 1723..1801 | 230 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22061962..22063054 | 339..1431 | 5465 | 100 | Plus |
| 3L | 28110227 | 3L | 22063679..22064074 | 1427..1822 | 1980 | 100 | Plus |
| 3L | 28110227 | 3L | 22061081..22061405 | 17..341 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 22514669..22514725 | 1601..1657 | 210 | 91.2 | Plus |
| 3R | 32079331 | 3R | 18806172..18806247 | 1798..1723 | 200 | 84.2 | Minus |
| 3R | 32079331 | 3R | 12513149..12513201 | 1653..1601 | 190 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:07 has no hits.
BS14430.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:02 Download gff for
BS14430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrR-RA | 319..2123 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:22 Download gff for
BS14430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..2476 | 17..1821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:22 Download gff for
BS14430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..2476 | 17..1821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:22 Download gff for
BS14430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22061081..22061404 | 17..340 | 100 | -> | Plus |
| 3L | 22061964..22063052 | 341..1429 | 100 | -> | Plus |
| 3L | 22063682..22064073 | 1430..1821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:22 Download gff for
BS14430.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22054181..22054504 | 17..340 | 100 | -> | Plus |
| arm_3L | 22055064..22056152 | 341..1429 | 100 | -> | Plus |
| arm_3L | 22056782..22057173 | 1430..1821 | 100 | | Plus |
BS14430.pep Sequence
Translation from 16 to 1821
> BS14430.pep
MPSADQILFVNVTTTVAAAALTAAAAVSTTKSGSGNAARGYTDSDDDAGM
GTEAVANISGSLVEGLTTVTAALSTAQADKDSAGECEGAVEELHASILGL
QLAVPEWEALLTALVLSVIIVLTIIGNILVILSVFTYKPLRIVQNFFIVS
LAVADLTVALLVLPFNVAYSILGRWEFGIHLCKLWLTCDVLCCTSSILNL
CAIALDRYWAITDPINYAQKRTVGRVLLLISGVWLLSLLISSPPLIGWND
WPDEFTSATPCELTSQRGYVIYSSLGSFFIPLAIMTIVYIEIFVATRRRL
RERARANKLNTIALKSTELEPMANSSPVAASNSGSKSRLLASWLCCGRDR
AQFATPMIQNDQESISSETHQPQDSSKAGPHGNSDPQQQHVVVLVKKSRR
AKTKDSIKHGKTRGGRKSQSSSTCEPHGEQQLLPAGGDGGSCQPGGGHSG
GGKSDAEISTESGSDPKGCIQVCVTQADEQTSLKLTPPQSSTGVAAVSVT
PLQKKTSGVNQFIEEKQKISLSKERRAARTLGIIMGVFVICWLPFFLMYV
ILPFCQTCCPTNKFKNFITWLGYINSGLNPVIYTIFNLDYRRAFKRLLGL
N*
BS14430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oct-TyrR-PB | 601 | CG7485-PB | 1..601 | 1..601 | 3083 | 100 | Plus |
| Oct-TyrR-PA | 601 | CG7485-PA | 1..601 | 1..601 | 3083 | 100 | Plus |
| CG18208-PC | 670 | CG18208-PC | 116..668 | 110..598 | 675 | 31.1 | Plus |
| TyrR-PC | 631 | CG7431-PC | 52..608 | 25..597 | 603 | 30.5 | Plus |
| TyrR-PB | 631 | CG7431-PB | 52..608 | 25..597 | 603 | 30.5 | Plus |
