Clone BS14431 Report

Search the DGRC for BS14431

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptsnk-RA
Protein status:BS14431.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14431.3prime Sequence

770 bp (708 high quality bases) assembled on 2006-10-13

> BS14431.3prime
ATGGTCTAGAAAGCTTCTAGTGCTGCTTGAAGGCAATCTTCTCAATCCAA
TCCAGGTAGCTATATAGCCTGGTGTAAACTCCTGGGGCATTGGGAGCCGC
ACAGAATTTTCCAAACGAGGTGATGCCCACCACGAAGGCCACGCAGTTGT
ATTCCGGCAGCAGGGCATGAATGGGACCGCCGGAGTCACCCTGGCAGGTG
TCCCTGCCGCCTGGCAAATATCCCGCACAGAACTGCCCCTCGATGATTCC
CCTGGGCAGACGTCGCTCCTTGCGATAGATCTGCTTGCAGGTCATTTGTG
GGACTACGTCCAGGTCCACCTGGCGCAGGGCATTCGATTTGGCGCCCAGG
AACTCGGTGCGTCCCCAACCGGCGGCCACCACAGTGGGTATCTGGAGCTC
CGGCAGTTGCCACAGGCAAGCAGGACGCACCTGCTCCGAGAACTTGACCC
TTCTGGTCAGCTTGAGCAGGGCAATATCGTGGTAATATGCCGAGGATCTG
TACTTCGGATGCAGCACGATGATGAGGATCTTGATGTCCTGCTGGGTCGC
GCTGGTCTCGTTCAACTGGCGGGCGCCCAAGCGAACCATGTCCGGTGGTT
TGCTACCAGAGGTGGCACAGTGGGCAGCGGTCAGGACATACAGTTCGCTA
ACCAGGGCGCCTCCACAGCCCCATTTTATATCTTGATCCTTGGAGCCACT
ACCCTGCGTCCTTCCTAAAGCAGCCATGTGAAGGAAGAGTCCGTGTCGAG
TGGGGGTTCCACCGACTATC

BS14431.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7996-PA 1308 snk-RA 555..1308 770..17 3695 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 647..1400 770..17 3725 99.6 Minus
snk-RA 1403 CG7996-RA 616..1369 770..17 3725 99.6 Minus
snk-RC 1399 CG7996-RC 616..1365 770..17 3655 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13040199..13040786 17..604 2940 100 Plus
3R 32079331 3R 13040840..13041007 603..770 795 98.2 Plus
Blast to na_te.dros performed on 2015-02-08 11:49:10 has no hits.

BS14431.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:04 Download gff for BS14431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7996-PA 555..1308 17..770 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:10 Download gff for BS14431.3prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 616..1373 9..770 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:25 Download gff for BS14431.3prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 616..1373 9..770 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:25 Download gff for BS14431.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13040195..13040784 9..602 99 <- Plus
3R 13040840..13041007 603..770 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:10 Download gff for BS14431.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8865917..8866506 9..602 99 <- Plus
arm_3R 8866562..8866729 603..770 98   Plus

BS14431.5prime Sequence

863 bp (741 high quality bases) assembled on 2006-10-13

> BS14431.5prime
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAACGAGACCAGCGCGACCCAGC
AGGACATCAAGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCG
GCATATTACCACG

BS14431.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7996-PA 1308 snk-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 93..939 17..863 4235 100 Plus
snk-RA 1403 CG7996-RA 62..908 17..863 4235 100 Plus
snk-RC 1399 CG7996-RC 62..904 17..863 4165 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13041158..13041539 476..95 1910 100 Minus
3R 32079331 3R 13040840..13041101 738..477 1310 100 Minus
3R 32079331 3R 13040660..13040786 863..737 635 100 Minus
3R 32079331 3R 13041603..13041681 95..17 395 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:29:10 has no hits.

BS14431.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:04 Download gff for BS14431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7996-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:12 Download gff for BS14431.5prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 60..908 14..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:38 Download gff for BS14431.5prime
Subject Subject Range Query Range Percent Splice Strand
snk-RA 60..908 14..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:38 Download gff for BS14431.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13040660..13040784 739..863 100 <- Minus
3R 13040840..13041101 477..738 100 <- Minus
3R 13041158..13041538 96..476 100 <- Minus
3R 13041603..13041683 14..95 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:12 Download gff for BS14431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8866382..8866506 739..863 100 <- Minus
arm_3R 8866562..8866823 477..738 100 <- Minus
arm_3R 8866880..8867260 96..476 100 <- Minus
arm_3R 8867325..8867405 14..95 98   Minus

BS14431.complete Sequence

1340 bp assembled on 2006-11-01

GenBank Submission: FJ637660

> BS14431.complete
GAAGTTATCAGTCGACATGATAATACTTTGGTCTCTAATCGTGCATCTTC
AATTGACATGCTTGCATTTAATCCTGCAGACTCCAAATCTTGAGGCTCTC
GATGCCCTTGAAATAATCAACTACCAGACCACCAAGTACACAATCCCCGA
AGTTTGGAAAGAGCAGCCAGTGGCGACCATTGGCGAGGACGTGGATGATC
AGGACACCGAAGATGAGGAAAGCTATCTGAAGTTCGGCGACGATGCGGAG
GTTAGGACTTCGGTTTCGGAAGGACTTCACGAAGGTGCCTTCTGCCGGCG
GAGCTTCGATGGCCGGAGTGGATACTGCATCCTGGCCTATCAGTGCCTCC
ACGTCATTCGAGAGTATCGGGTGCATGGCACCCGCATCGACATCTGCACC
CATCGCAACAATGTCCCTGTCATCTGTTGTCCATTGGCGGACAAGCATGT
GCTGGCTCAGCGCATAAGTGCCACCAAATGTCAGGAGTACAATGCTGCCG
CCAGAAGGCTTCACTTGACGGACACCGGACGCACATTCTCCGGGAAGCAG
TGTGTGCCCAGTGTTCCCCTGATAGTCGGTGGAACCCCCACTCGACACGG
ACTCTTCCCTCACATGGCTGCCTTAGGATGGACGCAGGGTAGTGGCTCCA
AGGATCAAGATATAAAATGGGGCTGTGGAGGCGCCCTGGTTAGCGAACTG
TATGTCCTGACCGCTGCCCACTGTGCCACCTCTGGTAGCAAACCACCGGA
CATGGTTCGCTTGGGCGCCCGCCAGTTGAACGAGACCAGCGCGACCCAGC
AGGACATCAAGATCCTCATCATCGTGCTGCATCCGAAGTACAGATCCTCG
GCATATTACCACGATATTGCCCTGCTCAAGCTGACCAGAAGGGTCAAGTT
CTCGGAGCAGGTGCGTCCTGCTTGCCTGTGGCAACTGCCGGAGCTCCAGA
TACCCACTGTGGTGGCCGCCGGTTGGGGACGCACCGAGTTCCTGGGCGCC
AAATCGAATGCCCTGCGCCAGGTGGACCTGGACGTAGTCCCACAAATGAC
CTGCAAGCAGATCTATCGCAAGGAGCGACGTCTGCCCAGGGGAATCATCG
AGGGGCAGTTCTGTGCGGGATATTTGCCAGGCGGCAGGGACACCTGCCAG
GGTGACTCCGGCGGTCCCATTCATGCCCTGCTGCCGGAATACAACTGCGT
GGCCTTCGTGGTGGGCATCACCTCGTTTGGAAAATTCTGTGCGGCTCCCA
ATGCCCCAGGAGTTTACACCAGGCTATATAGCTACCTGGATTGGATTGAG
AAGATTGCCTTCAAGCAGCACTAGAAGCTTTCTAGACCAT

BS14431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1308 CG7996-PB 1..1308 17..1324 6540 100 Plus
snk-RA 1308 CG7996-PA 1..1308 17..1324 6540 100 Plus
snk-RC 759 CG7996-PC 1..759 17..779 3720 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
snk-RB 1434 CG7996-RB 93..1400 17..1324 6540 100 Plus
snk-RA 1403 CG7996-RA 62..1369 17..1324 6540 100 Plus
snk-RC 1399 CG7996-RC 62..1365 17..1324 6445 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13040199..13040786 1324..737 2940 100 Minus
3R 32079331 3R 13041158..13041539 476..95 1910 100 Minus
3R 32079331 3R 13040840..13041101 738..477 1310 100 Minus
3R 32079331 3R 13041603..13041681 95..17 395 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:18:38 has no hits.

BS14431.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:02 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 1..1308 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:13 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 91..1404 14..1332 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:48 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RA 62..1369 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:02 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RB 91..1404 14..1332 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:04 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
snk-RA 62..1369 17..1324 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:04 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13040199..13040784 739..1324 100 <- Minus
3R 13041158..13041538 96..476 100 <- Minus
3R 13041603..13041681 17..95 100   Minus
3R 13040840..13041101 477..738 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:48 Download gff for BS14431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8866562..8866823 477..738 100 <- Minus
arm_3R 8865921..8866506 739..1324 100 <- Minus
arm_3R 8866880..8867260 96..476 100 <- Minus
arm_3R 8867325..8867403 17..95 100   Minus

BS14431.pep Sequence

Translation from 16 to 1323

> BS14431.pep
MIILWSLIVHLQLTCLHLILQTPNLEALDALEIINYQTTKYTIPEVWKEQ
PVATIGEDVDDQDTEDEESYLKFGDDAEVRTSVSEGLHEGAFCRRSFDGR
SGYCILAYQCLHVIREYRVHGTRIDICTHRNNVPVICCPLADKHVLAQRI
SATKCQEYNAAARRLHLTDTGRTFSGKQCVPSVPLIVGGTPTRHGLFPHM
AALGWTQGSGSKDQDIKWGCGGALVSELYVLTAAHCATSGSKPPDMVRLG
ARQLNETSATQQDIKILIIVLHPKYRSSAYYHDIALLKLTRRVKFSEQVR
PACLWQLPELQIPTVVAAGWGRTEFLGAKSNALRQVDLDVVPQMTCKQIY
RKERRLPRGIIEGQFCAGYLPGGRDTCQGDSGGPIHALLPEYNCVAFVVG
ITSFGKFCAAPNAPGVYTRLYSYLDWIEKIAFKQH*

BS14431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
snk-PB 435 CG7996-PB 1..435 1..435 2328 100 Plus
snk-PA 435 CG7996-PA 1..435 1..435 2328 100 Plus
snk-PC 252 CG7996-PC 1..241 1..241 1286 99.2 Plus
spirit-PD 393 CG2056-PD 95..366 136..432 515 41.1 Plus
spirit-PC 393 CG2056-PC 95..366 136..432 515 41.1 Plus