Clone BS14433 Report

Search the DGRC for BS14433

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptIrk3-RA
Protein status:BS14433.pep: full length peptide match
Sequenced Size:1361

Clone Sequence Records

BS14433.3prime Sequence

684 bp (570 high quality bases) assembled on 2006-10-13

> BS14433.3prime
ATGGTCTAGAAAGCTTTCACTTTCTGTACTCTAGCTTTAAGTGATCATTT
TTCGGATTCGTCATGGGCATGTCCACCGATATGGTCCTGTTGAAGTTCTC
GTAGTCGACAATGTAGCGCTCGTTTTGGGCGTCGTAATGGATGATATTGA
CGAACCGCTGGCCCCAGAAAATCTCCCTTGGCAGATAGGACGTCTTGGCC
TCCGTCATCTGCGCTGTGGCAGGCGAAGTGCCCACAATGGACACATACAA
CTCAAATTGGGCAGCATTGAAGAGTTTCGCTGTGGTGAACTGAGACAACG
GGCTGGTCTCATCGATGACATGGCACACCACATCGGGCCAGAGAATAATC
TGCTCCCCATTCCCCTCCAGCTTCAGTTCCACGTGACTTTTTATAGTCTC
ACCCTCGCGCGTGCGTTTGTCCACGATGATGTAGACTCGTATCTTGGACT
CGATGGACTGCTGCTCGCGGGGATCACAGACGCGGAAGAGCAAACAAAGC
CTGCCGTCGCGATAACAGATCACCGCCTTATCGCTGAACTTCAGCTTGGT
CAGCTGCCTCGCCGGCCGTGCGGTCTTGGCATAGATCACGCTCACCATAC
AGCCCTCGATTAGGGCCGCACTCAACATCTGCATGACGAACAGGAAGATC
GTCTCCCGACACTCCTCGCTGGCGTATTTTTCGC

BS14433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10369-PA 1329 Irk3-RA 662..1329 684..17 3315 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-RD 1820 CG10369-RD 887..1556 684..15 3335 99.9 Minus
Irk3-RA 1808 CG10369-RA 875..1544 684..15 3335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18711335..18711734 15..414 2000 100 Plus
2L 23513712 2L 18712189..18712352 521..684 805 99.4 Plus
2L 23513712 2L 18712004..18712111 414..521 540 100 Plus
Blast to na_te.dros performed on 2015-02-05 02:22:49 has no hits.

BS14433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:07 Download gff for BS14433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10369-PA 662..1329 17..684 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:55 Download gff for BS14433.3prime
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 875..1553 7..684 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:57 Download gff for BS14433.3prime
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 875..1553 7..684 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:57 Download gff for BS14433.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18711326..18711733 7..413 99 <- Plus
2L 18712004..18712110 414..520 100 <- Plus
2L 18712189..18712352 521..684 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:55 Download gff for BS14433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18711326..18711733 7..413 99 <- Plus
arm_2L 18712004..18712110 414..520 100 <- Plus
arm_2L 18712189..18712352 521..684 99   Plus

BS14433.5prime Sequence

675 bp (617 high quality bases) assembled on 2006-10-13

> BS14433.5prime
GAAGTTATCAGTCGACATGCAATCGGACGCATCTCCCCTGGGAGCTGCTG
CCACGGATTCCCTAACCATGCATCGCTCAACCTCCATGCCGGTGAAGCCC
AAGCCACTGGAGCAGAAGCCACTGCTCCGTTCCTCCGAAAAGGAGACGGT
CAATGCGTCCGATTACTATCCGGAGAGTCCGGGATTCGTACGGCGCAGAA
GGTCAAAAGCAGCCGGCGATCACCTGGAAACACGCAGCGAGCAAAATTTC
CCCTACGCACACGACTGGGCGGGCAGTACGATTGAGCTTACTCCAGATTT
GGGATCCGGACCGCGGACTTCCTCCTCCGATGGACTGAGACGCAGCCTTA
ATCGCGTGATGGAAAAGAACGGCAAGGAGAACGTTGTGTTCCGCCGCATT
CCGGAGAAGTCATGGCGCTACATGCGGGATCTGGTCACCACGCTGATGGA
ACTGGAGTGGAAGTATATGCTGACCCTGTTCCTGGGCAGCTACTTCCTCA
GCTGGCTGCTCTTCGCCGCCCTCTGCTACGTGGTGGCCTACTCGCACGGT
GACTTCATCTTCGATCCGGTAAGTGGCAAGCGAATGGGCGAGGGCGTGGA
TCCCTGCATCTACGGGGTGCACAGCTGGGTGGCCATGATCATATACTCTG
TGGAAACACAGACGACCCTCGGATT

BS14433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10369-PA 1329 Irk3-RA 1..659 17..675 3295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-RA 1808 CG10369-RA 213..872 16..675 3300 100 Plus
Irk3-RD 1820 CG10369-RD 213..884 16..675 3170 98.2 Plus
Irk3-RC 918 CG10369-RC 213..642 16..445 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18712355..18712589 675..441 1160 99.6 Minus
2L 23513712 2L 18713306..18713536 246..16 1155 100 Minus
2L 23513712 2L 18712952..18713150 445..247 995 100 Minus
Blast to na_te.dros performed on 2015-02-11 19:05:57 has no hits.

BS14433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:07 Download gff for BS14433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10369-PA 1..659 17..675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:10:12 Download gff for BS14433.5prime
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 213..872 16..675 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:10 Download gff for BS14433.5prime
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 213..872 16..675 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:10 Download gff for BS14433.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18712355..18712584 446..675 100 <- Minus
2L 18712952..18713150 247..445 100 <- Minus
2L 18713306..18713536 16..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:10:12 Download gff for BS14433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18712355..18712584 446..675 100 <- Minus
arm_2L 18712952..18713150 247..445 100 <- Minus
arm_2L 18713306..18713536 16..246 100   Minus

BS14433.complete Sequence

1361 bp assembled on 2009-08-24

GenBank Submission: KX801553

> BS14433.complete
GAAGTTATCAGTCGACATGCAATCGGACGCATCTCCCCTGGGAGCTGCTG
CCACGGATTCCCTAACCATGCATCGCTCAACCTCCATGCCGGTGAAGCCC
AAGCCACTGGAGCAGAAGCCACTGCTCCGTTCCTCCGAAAAGGAGACGGT
CAATGCGTCCGATTACTATCCGGAGAGTCCGGGATTCGTACGGCGCAGAA
GGTCAAAAGCAGCCGGCGATCACCTGGAAACACGCAGCGAGCAAAATTTC
CCCTACGCACACGACTGGGCGGGCAGTACGATTGAGCTTACTCCAGATTT
GGGATCCGGACCGCGGACTTCCTCCTCCGATGGACTGAGACGCAGCCTTA
ATCGCGTGATGGAAAAGAACGGCAAGGAGAACGTTGTGTTCCGCCGCATT
CCGGAGAAGTCATGGCGCTACATGCGGGATCTGGTCACCACGCTGATGGA
ACTGGAGTGGAAGTATATGCTGACCCTGTTCCTGGGCAGCTACTTCCTCA
GCTGGCTGCTCTTCGCCGCCCTCTGCTACGTGGTGGCCTACTCGCACGGT
GACTTCATCTTCGATCCGGTAAGTGGCAAGCGAATGGGCGAGGGCGTGGA
TCCCTGCATCTACGGGGTGCACAGCTGGGTGGCCATGATCATATACTCTG
TGGAAACACAGACGACCCTCGGATTCGGCGAAAAATACGCCAGCGAGGAG
TGTCCGGAGACGATCTTCCTGTTCGTCATGCAGATGTTGAGTGCGGCCCT
AATCGAGGGCTGTATGGTGAGCGTGATCTATGCCAAGACCGCACGGCCGG
CGAGGCAGCTGACCAAGCTGAAGTTCAGCGATAAGGCGGTGATCTGTTAT
CGCGACGGCAGGCTTTGTTTGCTCTTCCGCGTCTGTGATCCCCGCGAGCA
GCAGTCCATCGAGTCCAAGATACGAGTCTACATCATCGTGGACAAACGCA
CGCGCGAGGGTGAGACTATAAAAAGTCACGTGGAACTGAAGCTGGAGGGG
AATGGGGAGCAGATTATTCTCTGGCCCGATGTGGTGTGCCATGTCATCGA
TGAGACCAGCCCGTTGTCTCAGTTCACCACAGCGAAACTCTTCAATGCTG
CCCAATTTGAGTTGTATGTGTCCATTGTGGGCACTTCGCCTGCCACAGCG
CAGATGACGGAGGCCAAGACGTCCTATCTGCCAAGGGAGATTTTCTGGGG
CCAGCGGTTCGTCAATATCATCCATTACGACGCCCAAAACGAGCGCTACA
TTGTCGACTACGAGAACTTCAACAGGACCATATCGGTGGACATGCCCATG
ACGAATCCGAAAAATGATCACTTAAAGCTAGAGTACAGAAAGTGAAAGCT
TTCTAGACCAT

BS14433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-RA 1329 CG10369-PA 1..1329 17..1345 6645 100 Plus
Irk3-RD 1341 CG10369-PD 1..1341 17..1345 6490 99.1 Plus
Irk3-RC 618 CG10369-PC 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-RA 1808 CG10369-RA 213..1544 16..1347 6660 100 Plus
Irk3-RD 1820 CG10369-RD 213..1556 16..1347 6505 99.1 Plus
Irk3-RC 918 CG10369-RC 213..642 16..445 2150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18711335..18711734 1347..948 2000 100 Minus
2L 23513712 2L 18712189..18712589 841..441 1990 99.8 Minus
2L 23513712 2L 18713306..18713536 246..16 1155 100 Minus
2L 23513712 2L 18712952..18713150 445..247 995 100 Minus
2L 23513712 2L 18712004..18712111 948..841 540 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:28:35 has no hits.

BS14433.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:01:49 Download gff for BS14433.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 229..1556 17..1344 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:42 Download gff for BS14433.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 214..1541 17..1344 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:26 Download gff for BS14433.complete
Subject Subject Range Query Range Percent Splice Strand
Irk3-RA 214..1541 17..1344 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:26 Download gff for BS14433.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18713306..18713535 17..246 100   Minus
2L 18711338..18711733 949..1344 100 <- Minus
2L 18712004..18712110 842..948 100 <- Minus
2L 18712189..18712584 446..841 100 <- Minus
2L 18712952..18713150 247..445 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:42 Download gff for BS14433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18711338..18711733 949..1344 100 <- Minus
arm_2L 18712004..18712110 842..948 100 <- Minus
arm_2L 18712189..18712584 446..841 100 <- Minus
arm_2L 18712952..18713150 247..445 100 <- Minus
arm_2L 18713306..18713535 17..246 100   Minus

BS14433.pep Sequence

Translation from 16 to 1344

> BS14433.pep
MQSDASPLGAAATDSLTMHRSTSMPVKPKPLEQKPLLRSSEKETVNASDY
YPESPGFVRRRRSKAAGDHLETRSEQNFPYAHDWAGSTIELTPDLGSGPR
TSSSDGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKY
MLTLFLGSYFLSWLLFAALCYVVAYSHGDFIFDPVSGKRMGEGVDPCIYG
VHSWVAMIIYSVETQTTLGFGEKYASEECPETIFLFVMQMLSAALIEGCM
VSVIYAKTARPARQLTKLKFSDKAVICYRDGRLCLLFRVCDPREQQSIES
KIRVYIIVDKRTREGETIKSHVELKLEGNGEQIILWPDVVCHVIDETSPL
SQFTTAKLFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVN
IIHYDAQNERYIVDYENFNRTISVDMPMTNPKNDHLKLEYRK*

BS14433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:34
Subject Length Description Subject Range Query Range Score Percent Strand
Irk3-PA 442 CG10369-PA 1..442 1..442 2315 100 Plus
Irk3-PD 446 CG10369-PD 1..446 1..442 2300 99.1 Plus
Irk3-PC 205 CG10369-PC 1..144 1..144 743 99.3 Plus
Irk1-PH 526 CG44159-PH 12..354 108..442 630 36.9 Plus
Irk1-PC 526 CG44159-PC 12..354 108..442 630 36.9 Plus