Clone BS14434 Report

Search the DGRC for BS14434

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCyp28c1-RA
Protein status:BS14434.pep: full length peptide match
Sequenced Size:1550

Clone Sequence Records

BS14434.complete Sequence

1550 bp assembled on 2009-12-07

GenBank Submission: KX800787

> BS14434.complete
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCAAGCACCAGGAACGCAACGACTTCATCAACCATCTGCTCGAG
ATGCAGAGGGAACTGGATCTCAGCGAGGAGGACATGGCCTCGCATGCCAT
GACCTTCATGTTCGACGGCCTGGACACCACCTCCAATAGCATTGCCCATT
GTCTTCTGCTGCTTGGTCGTAATCCAGATTGCCAGCGGCGTTTGTACGAG
GAACTCCAGTTGGTCAATCCCGGTGGTTATCTGCCCGATCTGGATGCACT
GATAGATCTGCCCTATCTGAGTGCCTGCTTTAATGAAAGCCTACGAATCT
ATCCGGCTGGCGGCTGGGCATCAAAGACCTGCACAAAGGAGTACGAACTT
CGGGGTAGCCATCACTCGGAACCTCTGAAGCTGAGGCCTGGCGACCATGT
GATGGTGCCCATCTACGCTCTGCACAATGATCCGGATCTGTATCCGGAAC
CGGATGTTTTCCGGCCCGAAAGATTCCTCGACGGCGGTCTGAAAAACTGC
AAACAGCAGGGCATCTTTCTGGGATTCGGAAACGGGCCACGCCAGTGTGT
CGGGATGCGATTGGGTCTGGCCATGGCCAAAGCCGCACTGGCTGCCATTG
TCCAGCGATTCGAGGTCGTGGTCAGTCCACGGACACTCAACGGCACAGAG
TTAGATCCCCTGATCTTTGTGGGCGTTCACAAGGGCGGCATTTGGCTGCA
GTTCGTTCCACGGAAAAATGTGACTACGAAATAAAAGCTTTCTAGACCAT

BS14434.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1518 CG1895-PB 1..1518 17..1534 7590 100 Plus
Cyp28c1-RA 1518 CG1895-PA 1..1518 17..1534 7590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 2..1521 16..1535 7600 100 Plus
Cyp28c1-RA 1543 CG1895-RA 2..1521 16..1535 7600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11840909..11841359 1085..1535 2255 100 Plus
X 23542271 X 11840262..11840672 551..961 2055 100 Plus
X 23542271 X 11839858..11840203 205..550 1730 100 Plus
X 23542271 X 11839604..11839798 11..205 960 99.5 Plus
X 23542271 X 11840726..11840850 961..1085 625 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:58:36 has no hits.

BS14434.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:51 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 7..1516 23..1532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:42 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 9..1518 23..1532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:04 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 7..1516 23..1532 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:05 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 9..1518 23..1532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:05 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
X 11839616..11839797 23..204 100 -> Plus
X 11839858..11840203 205..550 100 -> Plus
X 11840262..11840672 551..961 100 -> Plus
X 11840727..11840850 962..1085 100 -> Plus
X 11840910..11841356 1086..1532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:42 Download gff for BS14434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11733649..11733830 23..204 100 -> Plus
arm_X 11733891..11734236 205..550 100 -> Plus
arm_X 11734295..11734705 551..961 100 -> Plus
arm_X 11734760..11734883 962..1085 100 -> Plus
arm_X 11734943..11735389 1086..1532 100   Plus

BS14434.3prime Sequence

761 bp (703 high quality bases) assembled on 2006-10-13

> BS14434.3prime
ATGGTCTAGAAAGCTTTTATTTCGTAGTCACATTTTTCCGTGGAACGAAC
TGCAGCCAAATGCCGCCCTTGTGAACGCCCACAAAGATCAGGGGATCTAA
CTCTGTGCCGTTGAGTGTCCGTGGACTGACCACGACCTCGAATCGCTGGA
CAATGGCAGCCAGTGCGGCTTTGGCCATGGCCAGACCCAATCGCATCCCG
ACACACTGGCGTGGCCCGTTTCCGAATCCCAGAAAGATGCCCTGCTGTTT
GCAGTTTTTCAGACCGCCGTCGAGGAATCTTTCGGGCCGGAAAACATCCG
GTTCCGGATACAGATCCGGATCATTGTGCAGAGCGTAGATGGGCACCATC
ACATGGTCGCCAGGCCTCAGCTTCAGAGGTTCCGAGTGATGGCTACCCCG
AAGTTCGTACTCCTTTGTGCAGGTCTTTGATGCCCAGCCGCCAGCCGGAT
AGATTCGTAGGCTTTCATTAAAGCAGGCACTCAGATAGGGCAGATCTATC
AGTGCATCCAGATCGGGCAGATAACCACCGGGATTGACCAACTGGAGTTC
CTCGTACAAACGCCGCTGGCAATCTGGATTACGACCAAGCAGCAGAAGAC
AATGGGCAATGCTATTGGAGGTGGTGTCCAGGCCGTCGAAAATGAAGGTC
ATGGCATGCGAGGCCATGTCCTCCTCGCTGAGATCCCAGTTCCCTCTGCA
TCTCAAGCAGATGGTTGATGAAGTCGTTGCGTTCCTGGTGCTTGGAACGA
CGCAGGCGCAA

BS14434.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1895-PA 1518 Cyp28c1-RA 776..1518 760..17 3630 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 778..1521 760..16 3670 99.6 Minus
Cyp28c1-RA 1543 CG1895-RA 778..1521 760..16 3670 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11840909..11841359 466..16 2255 100 Minus
X 23542271 X 11840503..11840672 760..590 775 98.2 Minus
X 23542271 X 11840726..11840850 590..466 625 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:27:19 has no hits.

BS14434.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:07 Download gff for BS14434.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1895-PA 777..1518 17..759 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:40:23 Download gff for BS14434.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 779..1521 16..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:42 Download gff for BS14434.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 779..1521 16..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:42 Download gff for BS14434.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11840504..11840672 590..759 98 -> Minus
X 11840727..11840850 466..589 100 -> Minus
X 11840910..11841359 16..465 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:40:23 Download gff for BS14434.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11734760..11734883 466..589 100 -> Minus
arm_X 11734537..11734705 590..759 98 -> Minus
arm_X 11734943..11735392 16..465 100   Minus

BS14434.5prime Sequence

795 bp (738 high quality bases) assembled on 2006-10-13

> BS14434.5prime
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCCGATGATTAGCGGAGCTCTGCG

BS14434.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG1895-PA 1518 Cyp28c1-RA 1..779 17..795 3845 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-RB 1665 CG1895-RB 2..781 16..795 3870 99.7 Plus
Cyp28c1-RA 1543 CG1895-RA 2..781 16..795 3870 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11839858..11840203 205..550 1730 100 Plus
X 23542271 X 11840262..11840506 551..795 1195 99.2 Plus
X 23542271 X 11839604..11839798 11..205 960 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 18:28:51 has no hits.

BS14434.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:08 Download gff for BS14434.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1895-PA 1..779 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:42 Download gff for BS14434.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 2..781 16..795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:12 Download gff for BS14434.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp28c1-RA 2..781 16..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:12 Download gff for BS14434.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11840262..11840506 551..795 99   Plus
X 11839604..11839797 11..204 99 -> Plus
X 11839858..11840203 205..550 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:42 Download gff for BS14434.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11733891..11734236 205..550 100 -> Plus
arm_X 11733637..11733830 11..204 99 -> Plus
arm_X 11734295..11734539 551..795 99   Plus

BS14434.pep Sequence

Translation from 16 to 1533

> BS14434.pep
MFGSLLLGIATLLGAIYAFLVSNFGHWRRRGVTEPRALPLFGSFPNMIWP
RQHFTMDMRDIYMHYRNTHSYVGCYLLRAPKLLVLEPRLVYEIYVSAFSH
FENNDASKMVDIAKDRLVALNPFVLEGEEWRHQRAVFSTLLTNGRIRTTH
AIMQRVCLDLCQFIAIKSAGGKDLDCIDLGLRFTGESLFDCVLGIQARTF
TDNPLPVVRQNHEMSAENRGLAIAGAVHGLFPNLPRWLRPKVFPRSHDRF
YGQMISEALRLRRSKHQERNDFINHLLEMQRELDLSEEDMASHAMTFMFD
GLDTTSNSIAHCLLLLGRNPDCQRRLYEELQLVNPGGYLPDLDALIDLPY
LSACFNESLRIYPAGGWASKTCTKEYELRGSHHSEPLKLRPGDHVMVPIY
ALHNDPDLYPEPDVFRPERFLDGGLKNCKQQGIFLGFGNGPRQCVGMRLG
LAMAKAALAAIVQRFEVVVSPRTLNGTELDPLIFVGVHKGGIWLQFVPRK
NVTTK*

BS14434.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp28c1-PB 505 CG1895-PB 1..505 1..505 2690 100 Plus
Cyp28c1-PA 505 CG1895-PA 1..505 1..505 2690 100 Plus
Cyp28d1-PA 502 CG10833-PA 8..501 6..499 931 38.2 Plus
Cyp28d2-PA 501 CG6081-PA 6..498 4..496 854 34.5 Plus
Cyp28a5-PA 505 CG8864-PA 9..500 9..494 835 34.2 Plus