Clone Sequence Records
BS14434.complete Sequence
1550 bp assembled on 2009-12-07
GenBank Submission: KX800787
> BS14434.complete
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCAGATGATTAGCGAAGCTCTGCGCCTGC
GTCGTTCCAAGCACCAGGAACGCAACGACTTCATCAACCATCTGCTCGAG
ATGCAGAGGGAACTGGATCTCAGCGAGGAGGACATGGCCTCGCATGCCAT
GACCTTCATGTTCGACGGCCTGGACACCACCTCCAATAGCATTGCCCATT
GTCTTCTGCTGCTTGGTCGTAATCCAGATTGCCAGCGGCGTTTGTACGAG
GAACTCCAGTTGGTCAATCCCGGTGGTTATCTGCCCGATCTGGATGCACT
GATAGATCTGCCCTATCTGAGTGCCTGCTTTAATGAAAGCCTACGAATCT
ATCCGGCTGGCGGCTGGGCATCAAAGACCTGCACAAAGGAGTACGAACTT
CGGGGTAGCCATCACTCGGAACCTCTGAAGCTGAGGCCTGGCGACCATGT
GATGGTGCCCATCTACGCTCTGCACAATGATCCGGATCTGTATCCGGAAC
CGGATGTTTTCCGGCCCGAAAGATTCCTCGACGGCGGTCTGAAAAACTGC
AAACAGCAGGGCATCTTTCTGGGATTCGGAAACGGGCCACGCCAGTGTGT
CGGGATGCGATTGGGTCTGGCCATGGCCAAAGCCGCACTGGCTGCCATTG
TCCAGCGATTCGAGGTCGTGGTCAGTCCACGGACACTCAACGGCACAGAG
TTAGATCCCCTGATCTTTGTGGGCGTTCACAAGGGCGGCATTTGGCTGCA
GTTCGTTCCACGGAAAAATGTGACTACGAAATAAAAGCTTTCTAGACCAT
BS14434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1518 | CG1895-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Cyp28c1-RA | 1518 | CG1895-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 2..1521 | 16..1535 | 7600 | 100 | Plus |
Cyp28c1-RA | 1543 | CG1895-RA | 2..1521 | 16..1535 | 7600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11840909..11841359 | 1085..1535 | 2255 | 100 | Plus |
X | 23542271 | X | 11840262..11840672 | 551..961 | 2055 | 100 | Plus |
X | 23542271 | X | 11839858..11840203 | 205..550 | 1730 | 100 | Plus |
X | 23542271 | X | 11839604..11839798 | 11..205 | 960 | 99.5 | Plus |
X | 23542271 | X | 11840726..11840850 | 961..1085 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:58:36 has no hits.
BS14434.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:51 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 7..1516 | 23..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:42 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 9..1518 | 23..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:04 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 7..1516 | 23..1532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:05 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 9..1518 | 23..1532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:05 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11839616..11839797 | 23..204 | 100 | -> | Plus |
X | 11839858..11840203 | 205..550 | 100 | -> | Plus |
X | 11840262..11840672 | 551..961 | 100 | -> | Plus |
X | 11840727..11840850 | 962..1085 | 100 | -> | Plus |
X | 11840910..11841356 | 1086..1532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:42 Download gff for
BS14434.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11733649..11733830 | 23..204 | 100 | -> | Plus |
arm_X | 11733891..11734236 | 205..550 | 100 | -> | Plus |
arm_X | 11734295..11734705 | 551..961 | 100 | -> | Plus |
arm_X | 11734760..11734883 | 962..1085 | 100 | -> | Plus |
arm_X | 11734943..11735389 | 1086..1532 | 100 | | Plus |
BS14434.3prime Sequence
761 bp (703 high quality bases) assembled on 2006-10-13
> BS14434.3prime
ATGGTCTAGAAAGCTTTTATTTCGTAGTCACATTTTTCCGTGGAACGAAC
TGCAGCCAAATGCCGCCCTTGTGAACGCCCACAAAGATCAGGGGATCTAA
CTCTGTGCCGTTGAGTGTCCGTGGACTGACCACGACCTCGAATCGCTGGA
CAATGGCAGCCAGTGCGGCTTTGGCCATGGCCAGACCCAATCGCATCCCG
ACACACTGGCGTGGCCCGTTTCCGAATCCCAGAAAGATGCCCTGCTGTTT
GCAGTTTTTCAGACCGCCGTCGAGGAATCTTTCGGGCCGGAAAACATCCG
GTTCCGGATACAGATCCGGATCATTGTGCAGAGCGTAGATGGGCACCATC
ACATGGTCGCCAGGCCTCAGCTTCAGAGGTTCCGAGTGATGGCTACCCCG
AAGTTCGTACTCCTTTGTGCAGGTCTTTGATGCCCAGCCGCCAGCCGGAT
AGATTCGTAGGCTTTCATTAAAGCAGGCACTCAGATAGGGCAGATCTATC
AGTGCATCCAGATCGGGCAGATAACCACCGGGATTGACCAACTGGAGTTC
CTCGTACAAACGCCGCTGGCAATCTGGATTACGACCAAGCAGCAGAAGAC
AATGGGCAATGCTATTGGAGGTGGTGTCCAGGCCGTCGAAAATGAAGGTC
ATGGCATGCGAGGCCATGTCCTCCTCGCTGAGATCCCAGTTCCCTCTGCA
TCTCAAGCAGATGGTTGATGAAGTCGTTGCGTTCCTGGTGCTTGGAACGA
CGCAGGCGCAA
BS14434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1895-PA | 1518 | Cyp28c1-RA | 776..1518 | 760..17 | 3630 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 778..1521 | 760..16 | 3670 | 99.6 | Minus |
Cyp28c1-RA | 1543 | CG1895-RA | 778..1521 | 760..16 | 3670 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11840909..11841359 | 466..16 | 2255 | 100 | Minus |
X | 23542271 | X | 11840503..11840672 | 760..590 | 775 | 98.2 | Minus |
X | 23542271 | X | 11840726..11840850 | 590..466 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:27:19 has no hits.
BS14434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:07 Download gff for
BS14434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1895-PA | 777..1518 | 17..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:40:23 Download gff for
BS14434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 779..1521 | 16..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:03:42 Download gff for
BS14434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 779..1521 | 16..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:03:42 Download gff for
BS14434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11840504..11840672 | 590..759 | 98 | -> | Minus |
X | 11840727..11840850 | 466..589 | 100 | -> | Minus |
X | 11840910..11841359 | 16..465 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:40:23 Download gff for
BS14434.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11734760..11734883 | 466..589 | 100 | -> | Minus |
arm_X | 11734537..11734705 | 590..759 | 98 | -> | Minus |
arm_X | 11734943..11735392 | 16..465 | 100 | | Minus |
BS14434.5prime Sequence
795 bp (738 high quality bases) assembled on 2006-10-13
> BS14434.5prime
GAAGTTATCAGTCGACATGTTTGGATCGCTTCTACTGGGGATTGCCACCT
TGCTGGGCGCGATCTATGCCTTTCTGGTCTCGAACTTTGGCCACTGGCGG
CGTCGCGGAGTCACAGAACCCAGAGCCCTGCCGCTCTTCGGTTCCTTTCC
CAACATGATTTGGCCACGCCAGCACTTCACCATGGACATGCGCGATATCT
ATATGCATTACAGGAATACCCATAGCTATGTGGGCTGCTACCTGTTGCGT
GCACCCAAGCTGCTCGTCCTGGAACCACGCCTTGTGTACGAGATCTATGT
GAGCGCGTTCAGTCATTTCGAGAACAACGATGCCTCCAAGATGGTGGACA
TCGCCAAGGATCGTTTGGTCGCCCTCAATCCATTCGTGCTCGAGGGCGAA
GAGTGGCGCCACCAGCGGGCGGTCTTCTCCACTCTGCTGACCAACGGTCG
CATCCGCACCACCCATGCCATCATGCAGCGTGTCTGTCTGGATCTCTGTC
AGTTCATTGCGATAAAGTCGGCTGGAGGCAAGGATCTGGACTGCATTGAT
CTGGGTCTTCGCTTCACGGGTGAATCGCTGTTTGACTGCGTCCTGGGCAT
CCAAGCGCGCACCTTCACCGACAATCCACTGCCGGTTGTGCGGCAAAACC
ACGAGATGTCCGCCGAGAATCGCGGATTGGCCATTGCCGGCGCCGTCCAT
GGCCTCTTCCCGAATCTTCCGCGCTGGCTGCGTCCCAAGGTCTTTCCCCG
TTCCCACGATCGATTCTACGGCCCGATGATTAGCGGAGCTCTGCG
BS14434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1895-PA | 1518 | Cyp28c1-RA | 1..779 | 17..795 | 3845 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-RB | 1665 | CG1895-RB | 2..781 | 16..795 | 3870 | 99.7 | Plus |
Cyp28c1-RA | 1543 | CG1895-RA | 2..781 | 16..795 | 3870 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11839858..11840203 | 205..550 | 1730 | 100 | Plus |
X | 23542271 | X | 11840262..11840506 | 551..795 | 1195 | 99.2 | Plus |
X | 23542271 | X | 11839604..11839798 | 11..205 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:28:51 has no hits.
BS14434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:08 Download gff for
BS14434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1895-PA | 1..779 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:42 Download gff for
BS14434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 2..781 | 16..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:59:12 Download gff for
BS14434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp28c1-RA | 2..781 | 16..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:59:12 Download gff for
BS14434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11840262..11840506 | 551..795 | 99 | | Plus |
X | 11839604..11839797 | 11..204 | 99 | -> | Plus |
X | 11839858..11840203 | 205..550 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:42 Download gff for
BS14434.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11733891..11734236 | 205..550 | 100 | -> | Plus |
arm_X | 11733637..11733830 | 11..204 | 99 | -> | Plus |
arm_X | 11734295..11734539 | 551..795 | 99 | | Plus |
BS14434.pep Sequence
Translation from 16 to 1533
> BS14434.pep
MFGSLLLGIATLLGAIYAFLVSNFGHWRRRGVTEPRALPLFGSFPNMIWP
RQHFTMDMRDIYMHYRNTHSYVGCYLLRAPKLLVLEPRLVYEIYVSAFSH
FENNDASKMVDIAKDRLVALNPFVLEGEEWRHQRAVFSTLLTNGRIRTTH
AIMQRVCLDLCQFIAIKSAGGKDLDCIDLGLRFTGESLFDCVLGIQARTF
TDNPLPVVRQNHEMSAENRGLAIAGAVHGLFPNLPRWLRPKVFPRSHDRF
YGQMISEALRLRRSKHQERNDFINHLLEMQRELDLSEEDMASHAMTFMFD
GLDTTSNSIAHCLLLLGRNPDCQRRLYEELQLVNPGGYLPDLDALIDLPY
LSACFNESLRIYPAGGWASKTCTKEYELRGSHHSEPLKLRPGDHVMVPIY
ALHNDPDLYPEPDVFRPERFLDGGLKNCKQQGIFLGFGNGPRQCVGMRLG
LAMAKAALAAIVQRFEVVVSPRTLNGTELDPLIFVGVHKGGIWLQFVPRK
NVTTK*
BS14434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp28c1-PB | 505 | CG1895-PB | 1..505 | 1..505 | 2690 | 100 | Plus |
Cyp28c1-PA | 505 | CG1895-PA | 1..505 | 1..505 | 2690 | 100 | Plus |
Cyp28d1-PA | 502 | CG10833-PA | 8..501 | 6..499 | 931 | 38.2 | Plus |
Cyp28d2-PA | 501 | CG6081-PA | 6..498 | 4..496 | 854 | 34.5 | Plus |
Cyp28a5-PA | 505 | CG8864-PA | 9..500 | 9..494 | 835 | 34.2 | Plus |