Clone BS14436 Report

Search the DGRC for BS14436

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG14075-RA
Protein status:BS14436.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14436.3prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BS14436.3prime
ATGGTCTAGAAAGCTTCTATTGAGATGAGCAGTTGGCATCGGTGTAGAGG
TCCATGTAGTCATCCGAGACGCAAGCGCTGCCAATGGGCATCGGCTGGCA
GATACCTTGCACCTTGCTGACGATTTCCACGTGGCAGGTGCGATGTCCGT
GGGCGGAAAGCTTGTGGAATCCGCTGGTCGGGTGCTTCAGGATGATCTGC
GGCTTGTGGCCAGACCGATGCTTCGTGGCCGGAGTGGGTTCGTCGAAGGT
CAGCCAGTCGGGCGGCATGGAGTGCAGGGACCTGCCGGCGGACTGGTCCC
CGGCCACATCCTGTTCCACCTCCAGTGGCAGGTCCACCCCATCTACGCCG
TCGTCCAGGTCGATGGGGAAACCGACTTTCGATTTGGCCTCATTTTCTGC
ACCCAGTAATTGGGGACTCAGTACCAGGGCGTTGGCAATCAGCAGAGTGG
TGGCACAGTGGAGCAGCAGATGCAGTGGGGCCATGTCGACTGATAACT

BS14436.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-PA 468 CG14075-RA 1..468 484..17 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-RA 674 CG14075-RA 54..524 484..14 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18985014..18985484 484..14 2355 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:08:17 has no hits.

BS14436.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:10 Download gff for BS14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-PA 1..468 17..484 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:41 Download gff for BS14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 49..529 9..490 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:17 Download gff for BS14436.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 49..529 9..490 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:17 Download gff for BS14436.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18985009..18985489 9..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:41 Download gff for BS14436.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18978109..18978589 9..490 99   Minus

BS14436.5prime Sequence

498 bp (498 high quality bases) assembled on 2006-10-13

> BS14436.5prime
GAAGTTATCAGTCGACATGGCCCCACTGCATCTGCTGCTCCACTGTGCCA
CCACTCTGCTGATTGCCAACGCCCTGGTACTGAGTCCCCAATTACTGGGT
GCAGAAAATGAGGCCAAATCGAAAGTCGGTTTCCCCATCGACCTGGACGA
CGGCGTAGATGGGGTGGACCTGCCACTGGAGGTGGAACAGGATGTGGCCG
GGGACCAGTCCGCCGGCAGGTCCCTGCACTCCATGCCGCCCGACTGGCTG
ACCTTCGACGAACCCACTCCGGCCACGAAGCATCGGTCTGGCCACAAGCC
GCAGATCATCCTGAAGCACCCGACCAGCGGATTCCACAAGCTTTCCGCCC
ACGGACATCGCACCTGCCACGTGGAAATCGTCAGCAAGGTGCAAGGTATC
TGCCAGCCGATGCCCATTGGCAGCGCTTGCGTCTCGGATGACTACATGGA
CCTCTACACCGATGCCAACTGCTCATCTCAATAGAAGCTTTCTAGACC

BS14436.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-PA 468 CG14075-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-RA 674 CG14075-RA 54..524 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18985014..18985484 17..487 2355 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:28:37 has no hits.

BS14436.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:10 Download gff for BS14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-PA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:59 Download gff for BS14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 49..529 11..492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:35 Download gff for BS14436.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 49..529 11..492 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:35 Download gff for BS14436.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18985009..18985489 11..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:59 Download gff for BS14436.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18978109..18978589 11..492 99   Plus

BS14436.complete Sequence

500 bp assembled on 2006-11-01

GenBank Submission: FJ637661

> BS14436.complete
GAAGTTATCAGTCGACATGGCCCCACTGCATCTGCTGCTCCACTGTGCCA
CCACTCTGCTGATTGCCAACGCCCTGGTACTGAGTCCCCAATTACTGGGT
GCAGAAAATGAGGCCAAATCGAAAGTCGGTTTCCCCATCGACCTGGACGA
CGGCGTAGATGGGGTGGACCTGCCACTGGAGGTGGAACAGGATGTGGCCG
GGGACCAGTCCGCCGGCAGGTCCCTGCACTCCATGCCGCCCGACTGGCTG
ACCTTCGACGAACCCACTCCGGCCACGAAGCATCGGTCTGGCCACAAGCC
GCAGATCATCCTGAAGCACCCGACCAGCGGATTCCACAAGCTTTCCGCCC
ACGGACATCGCACCTGCCACGTGGAAATCGTCAGCAAGGTGCAAGGTATC
TGCCAGCCGATGCCCATTGGCAGCGCTTGCGTCTCGGATGACTACATGGA
CCTCTACACCGATGCCAACTGCTCATCTCAATAGAAGCTTTCTAGACCAT

BS14436.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-RA 468 CG14075-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-RA 674 CG14075-RA 54..524 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18985014..18985484 17..487 2355 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:50:56 has no hits.

BS14436.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:54 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:45 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:30 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 54..521 17..484 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:54 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 1..468 17..484 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:14 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
CG14075-RA 54..521 17..484 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:14 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18985014..18985481 17..484 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:30 Download gff for BS14436.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18978114..18978581 17..484 100   Plus

BS14436.pep Sequence

Translation from 16 to 483

> BS14436.pep
MAPLHLLLHCATTLLIANALVLSPQLLGAENEAKSKVGFPIDLDDGVDGV
DLPLEVEQDVAGDQSAGRSLHSMPPDWLTFDEPTPATKHRSGHKPQIILK
HPTSGFHKLSAHGHRTCHVEIVSKVQGICQPMPIGSACVSDDYMDLYTDA
NCSSQ*

BS14436.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14075-PA 155 CG14075-PA 1..155 1..155 829 100 Plus