Clone BS14437 Report

Search the DGRC for BS14437

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG14983-RA
Protein status:BS14437.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14437.3prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS14437.3prime
ATGGTCTAGAAAGCTTTTAAAGAGGATAAAACTTTAAGCCGTAGATCCTG
CGGACTTCGTGATGACGGGCTCTTCGCGAGCAAGTGGGGCACCGAGAGCT
CTCCCGCAGGACGTTGTTGATGCAGTGGCGCCCAAAGAGGTGGCCACAAC
GCAGGGACACCATGGAATGCCTGCCATGCGGCTCACATTTCAAATCGCAG
ATGGAGCAGATGTTGACTTTGTACAGGAAGTCCAGTGCCTTGTTGAGCGA
TTTCAAATAGCTGTGCGTCTGGGCAATGTGCCTCACCAGCAGAGTGAAGT
ACTCATATTTGCCTAGCTCTTGCTGCAAACTCATTAGAATATTCCCGCGC
CTTGAATGGTATAGATGCATCCGTGATGTGACCGATTCCAGTTGGGCTAG
TCGCTGTTCTGGACTGGCGAAGCTCTCCTCGAGAATGATCTCTTGAATTT
CTTTCTCCTGCTCTTGCAGCTCCTTCAACAAGTCGACAATTTTCGGTAGA
TGTAACATGTCGACTGATAACT

BS14437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-PA 492 CG14983-RA 1..492 508..17 2460 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-RA 607 CG14983-RA 14..505 508..17 2460 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948801..3949292 17..508 2460 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:16:41 has no hits.

BS14437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:10 Download gff for BS14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-PA 1..492 17..508 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:51 Download gff for BS14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 12..517 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:09 Download gff for BS14437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 12..517 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:09 Download gff for BS14437.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3948798..3949300 12..517 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:51 Download gff for BS14437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3948798..3949300 12..517 98   Plus

BS14437.5prime Sequence

522 bp (522 high quality bases) assembled on 2006-10-13

> BS14437.5prime
GAAGTTATCAGTCGACATGTTACATCTACCGAAAATTGTCGACTTGTTGA
AGGAGCTGCAAGAGCAGGAGAAAGAAATTCAAGAGATCATTCTCGAGGAG
AGCTTCGCCAGTCCAGAACAGCGACTAGCCCAACTGGAATCGGTCACATC
ACGGATGCATCTATACCATTCAAGGCGCGGGAATATTCTAATGAGTTTGC
AGCAAGAGCTAGGCAAATATGAGTACTTCACTCTGCTGGTGAGGCACATT
GCCCAGACGCACAGCTATTTGAAATCGCTCAACAAGGCACTGGACTTCCT
GTACAAAGTCAACATCTGCTCCATCTGCGATTTGAAATGTGAGCCGCATG
GCAGGCATTCCATGGTGTCCCTGCGTTGTGGCCACCTCTTTGGGCGCCAC
TGCATCAACAACGTCCTGCGGGAGAGCTCTCGGTGCCCCACTTGCTCGCG
AAGAGCCCGTCATCACGAAGTCCGCAGGATCTACGGCTTAAAGTTTTATC
CTCTTTAAAAGCTTTCTAGACC

BS14437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-PA 492 CG14983-RA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-RA 607 CG14983-RA 14..505 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948801..3949292 508..17 2460 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:58:52 has no hits.

BS14437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:11 Download gff for BS14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-PA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:00 Download gff for BS14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 8..513 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:55 Download gff for BS14437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 8..513 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:55 Download gff for BS14437.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3948798..3949300 8..513 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:00 Download gff for BS14437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3948798..3949300 8..513 98   Minus

BS14437.complete Sequence

524 bp assembled on 2006-11-01

GenBank Submission: FJ637662

> BS14437.complete
GAAGTTATCAGTCGACATGTTACATCTACCGAAAATTGTCGACTTGTTGA
AGGAGCTGCAAGAGCAGGAGAAAGAAATTCAAGAGATCATTCTCGAGGAG
AGCTTCGCCAGTCCAGAACAGCGACTAGCCCAACTGGAATCGGTCACATC
ACGGATGCATCTATACCATTCAAGGCGCGGGAATATTCTAATGAGTTTGC
AGCAAGAGCTAGGCAAATATGAGTACTTCACTCTGCTGGTGAGGCACATT
GCCCAGACGCACAGCTATTTGAAATCGCTCAACAAGGCACTGGACTTCCT
GTACAAAGTCAACATCTGCTCCATCTGCGATTTGAAATGTGAGCCGCATG
GCAGGCATTCCATGGTGTCCCTGCGTTGTGGCCACCTCTTTGGGCGCCAC
TGCATCAACAACGTCCTGCGGGAGAGCTCTCGGTGCCCCACTTGCTCGCG
AAGAGCCCGTCATCACGAAGTCCGCAGGATCTACGGCTTAAAGTTTTATC
CTCTTTAAAAGCTTTCTAGACCAT

BS14437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-RA 492 CG14983-PA 1..492 17..508 2460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-RA 607 CG14983-RA 14..505 17..508 2460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3948801..3949292 508..17 2460 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:52:08 has no hits.

BS14437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:03 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 1..492 17..508 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:28 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 8..513 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:06 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 19..503 22..506 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:04 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 6..508 8..513 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:51 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
CG14983-RA 19..503 22..506 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:51 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3948803..3949287 22..506 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:06 Download gff for BS14437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3948803..3949287 22..506 100   Minus

BS14437.pep Sequence

Translation from 16 to 507

> BS14437.pep
MLHLPKIVDLLKELQEQEKEIQEIILEESFASPEQRLAQLESVTSRMHLY
HSRRGNILMSLQQELGKYEYFTLLVRHIAQTHSYLKSLNKALDFLYKVNI
CSICDLKCEPHGRHSMVSLRCGHLFGRHCINNVLRESSRCPTCSRRARHH
EVRRIYGLKFYPL*

BS14437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14983-PA 163 CG14983-PA 1..163 1..163 859 100 Plus
CG17329-PA 162 CG17329-PA 6..159 12..160 257 40.8 Plus
CG13481-PC 176 CG13481-PC 35..170 26..156 217 35.3 Plus
CG13481-PB 176 CG13481-PB 35..170 26..156 217 35.3 Plus