Clone BS14439 Report

Search the DGRC for BS14439

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptAcp53C14a-RA
Protein status:BS14439.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14439.3prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14439.3prime
ATGGTCTAGAAAGCTTTTACTCATCAAAGCACCTCAAGCTATCAAACTTG
GCTATAATCGGTCTAATCAGTCCGACTCCGGTGGTAAAGGTTTGTACGAG
ACATTCCGGTCGATCGTATATCGCCTTCTTGCCAAACTGATGGGCCACCC
TAATAAATCTGAGAATGCTACCAGTTAGTTTGATTTTCGGCTGAAAATCA
ACGCAATCGGATAGGAGGCTTATGGCCGTTATAGAGTTCTCGATCATTAG
GGCACCGGCATCAGTCACCACTTCCAAACATCGCAGATAGTGATCGAGTT
CCGAACTTATGGCGGCTTGAACTTGCGACTTTTGGCATAAAGCCAAAAAG
CTTAGTAACAAGGCGATCTTAATCAAATGCATGTCGACTGATAACT

BS14439.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8626-PA 366 Acp53C14a-RA 1..366 382..17 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Acp53C14a-RB 705 CG8626-RB 44..409 382..17 1830 100 Minus
Acp53C14a-RA 479 CG8626-RA 44..409 382..17 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16748130..16748453 17..340 1620 100 Plus
2R 25286936 2R 16748506..16748547 341..382 210 100 Plus
Blast to na_te.dros performed 2015-02-10 17:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 24..52 330..358 109 86.2 Plus

BS14439.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:12 Download gff for BS14439.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8626-PA 1..366 17..382 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:13 Download gff for BS14439.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 26..391 17..382 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:41 Download gff for BS14439.3prime
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 44..409 17..382 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:41 Download gff for BS14439.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16748130..16748453 17..340 100 <- Plus
2R 16748506..16748547 341..382 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:13 Download gff for BS14439.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12635635..12635958 17..340 100 <- Plus
arm_2R 12636011..12636052 341..382 100   Plus

BS14439.5prime Sequence

396 bp (396 high quality bases) assembled on 2006-10-13

> BS14439.5prime
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGTAAAAGCTTTCTAGACC

BS14439.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8626-PA 366 Acp53C14a-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Acp53C14a-RB 705 CG8626-RB 44..409 17..382 1830 100 Plus
Acp53C14a-RA 479 CG8626-RA 44..409 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16748130..16748453 382..59 1620 100 Minus
2R 25286936 2R 16748506..16748547 58..17 210 100 Minus
Blast to na_te.dros performed 2015-02-12 03:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 24..52 69..41 109 86.2 Minus

BS14439.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:12 Download gff for BS14439.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8626-PA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:11 Download gff for BS14439.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 26..391 17..382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:35 Download gff for BS14439.5prime
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 44..409 17..382 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:35 Download gff for BS14439.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16748130..16748453 59..382 100 <- Minus
2R 16748506..16748547 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:11 Download gff for BS14439.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12635635..12635958 59..382 100 <- Minus
arm_2R 12636011..12636052 17..58 100   Minus

BS14439.complete Sequence

398 bp assembled on 2006-11-01

GenBank Submission: FJ637663

> BS14439.complete
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGTAAAAGCTTTCTAGACCAT

BS14439.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:56
Subject Length Description Subject Range Query Range Score Percent Strand
Acp53C14a-RB 366 CG8626-PB 1..366 17..382 1830 100 Plus
Acp53C14a-RA 366 CG8626-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
Acp53C14a-RB 705 CG8626-RB 44..409 17..382 1830 100 Plus
Acp53C14a-RA 479 CG8626-RA 44..409 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16748130..16748453 382..59 1620 100 Minus
2R 25286936 2R 16748506..16748547 58..17 210 100 Minus
Blast to na_te.dros performed 2014-11-28 00:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
transib3 2883 transib3 TRANSIB3 2883bp 24..52 69..41 109 86.2 Minus

BS14439.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:52 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 1..366 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:26 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 26..391 17..382 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:29 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 26..389 17..380 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:53 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 15..380 17..382 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:58 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
Acp53C14a-RA 44..407 17..380 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:58 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16748132..16748453 59..380 100 <- Minus
2R 16748506..16748547 17..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:29 Download gff for BS14439.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12635637..12635958 59..380 100 <- Minus
arm_2R 12636011..12636052 17..58 100   Minus

BS14439.pep Sequence

Translation from 16 to 381

> BS14439.pep
MHLIKIALLLSFLALCQKSQVQAAISSELDHYLRCLEVVTDAGALMIENS
ITAISLLSDCVDFQPKIKLTGSILRFIRVAHQFGKKAIYDRPECLVQTFT
TGVGLIRPIIAKFDSLRCFDE*

BS14439.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Acp53C14a-PB 121 CG8626-PB 1..121 1..121 608 100 Plus
Acp53C14a-PA 121 CG8626-PA 1..121 1..121 608 100 Plus
Acp53Ea-PA 120 CG8622-PA 1..120 1..121 155 28.1 Plus
Acp53C14b-PB 132 CG15616-PB 1..127 1..121 136 26.8 Plus
Acp53C14b-PA 132 CG15616-PA 1..127 1..121 136 26.8 Plus