Clone Sequence Records
BS14439.3prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS14439.3prime
ATGGTCTAGAAAGCTTTTACTCATCAAAGCACCTCAAGCTATCAAACTTG
GCTATAATCGGTCTAATCAGTCCGACTCCGGTGGTAAAGGTTTGTACGAG
ACATTCCGGTCGATCGTATATCGCCTTCTTGCCAAACTGATGGGCCACCC
TAATAAATCTGAGAATGCTACCAGTTAGTTTGATTTTCGGCTGAAAATCA
ACGCAATCGGATAGGAGGCTTATGGCCGTTATAGAGTTCTCGATCATTAG
GGCACCGGCATCAGTCACCACTTCCAAACATCGCAGATAGTGATCGAGTT
CCGAACTTATGGCGGCTTGAACTTGCGACTTTTGGCATAAAGCCAAAAAG
CTTAGTAACAAGGCGATCTTAATCAAATGCATGTCGACTGATAACT
BS14439.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8626-PA | 366 | Acp53C14a-RA | 1..366 | 382..17 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..409 | 382..17 | 1830 | 100 | Minus |
Acp53C14a-RA | 479 | CG8626-RA | 44..409 | 382..17 | 1830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748130..16748453 | 17..340 | 1620 | 100 | Plus |
2R | 25286936 | 2R | 16748506..16748547 | 341..382 | 210 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 330..358 | 109 | 86.2 | Plus |
BS14439.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:12 Download gff for
BS14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8626-PA | 1..366 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:13 Download gff for
BS14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..391 | 17..382 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:41 Download gff for
BS14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..409 | 17..382 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:41 Download gff for
BS14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748130..16748453 | 17..340 | 100 | <- | Plus |
2R | 16748506..16748547 | 341..382 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:13 Download gff for
BS14439.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635635..12635958 | 17..340 | 100 | <- | Plus |
arm_2R | 12636011..12636052 | 341..382 | 100 | | Plus |
BS14439.5prime Sequence
396 bp (396 high quality bases) assembled on 2006-10-13
> BS14439.5prime
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGTAAAAGCTTTCTAGACC
BS14439.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8626-PA | 366 | Acp53C14a-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..409 | 17..382 | 1830 | 100 | Plus |
Acp53C14a-RA | 479 | CG8626-RA | 44..409 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748130..16748453 | 382..59 | 1620 | 100 | Minus |
2R | 25286936 | 2R | 16748506..16748547 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 69..41 | 109 | 86.2 | Minus |
BS14439.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:12 Download gff for
BS14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8626-PA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:11 Download gff for
BS14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..391 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:35 Download gff for
BS14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..409 | 17..382 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:35 Download gff for
BS14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748130..16748453 | 59..382 | 100 | <- | Minus |
2R | 16748506..16748547 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:11 Download gff for
BS14439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635635..12635958 | 59..382 | 100 | <- | Minus |
arm_2R | 12636011..12636052 | 17..58 | 100 | | Minus |
BS14439.complete Sequence
398 bp assembled on 2006-11-01
GenBank Submission: FJ637663
> BS14439.complete
GAAGTTATCAGTCGACATGCATTTGATTAAGATCGCCTTGTTACTAAGCT
TTTTGGCTTTATGCCAAAAGTCGCAAGTTCAAGCCGCCATAAGTTCGGAA
CTCGATCACTATCTGCGATGTTTGGAAGTGGTGACTGATGCCGGTGCCCT
AATGATCGAGAACTCTATAACGGCCATAAGCCTCCTATCCGATTGCGTTG
ATTTTCAGCCGAAAATCAAACTAACTGGTAGCATTCTCAGATTTATTAGG
GTGGCCCATCAGTTTGGCAAGAAGGCGATATACGATCGACCGGAATGTCT
CGTACAAACCTTTACCACCGGAGTCGGACTGATTAGACCGATTATAGCCA
AGTTTGATAGCTTGAGGTGCTTTGATGAGTAAAAGCTTTCTAGACCAT
BS14439.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 366 | CG8626-PB | 1..366 | 17..382 | 1830 | 100 | Plus |
Acp53C14a-RA | 366 | CG8626-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-RB | 705 | CG8626-RB | 44..409 | 17..382 | 1830 | 100 | Plus |
Acp53C14a-RA | 479 | CG8626-RA | 44..409 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16748130..16748453 | 382..59 | 1620 | 100 | Minus |
2R | 25286936 | 2R | 16748506..16748547 | 58..17 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:17:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib3 | 2883 | transib3 TRANSIB3 2883bp | 24..52 | 69..41 | 109 | 86.2 | Minus |
BS14439.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:52 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 1..366 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:26 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..391 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:29 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 26..389 | 17..380 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:53 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 15..380 | 17..382 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:58 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acp53C14a-RA | 44..407 | 17..380 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:58 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16748132..16748453 | 59..380 | 100 | <- | Minus |
2R | 16748506..16748547 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:29 Download gff for
BS14439.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12635637..12635958 | 59..380 | 100 | <- | Minus |
arm_2R | 12636011..12636052 | 17..58 | 100 | | Minus |
BS14439.pep Sequence
Translation from 16 to 381
> BS14439.pep
MHLIKIALLLSFLALCQKSQVQAAISSELDHYLRCLEVVTDAGALMIENS
ITAISLLSDCVDFQPKIKLTGSILRFIRVAHQFGKKAIYDRPECLVQTFT
TGVGLIRPIIAKFDSLRCFDE*
BS14439.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acp53C14a-PB | 121 | CG8626-PB | 1..121 | 1..121 | 608 | 100 | Plus |
Acp53C14a-PA | 121 | CG8626-PA | 1..121 | 1..121 | 608 | 100 | Plus |
Acp53Ea-PA | 120 | CG8622-PA | 1..120 | 1..121 | 155 | 28.1 | Plus |
Acp53C14b-PB | 132 | CG15616-PB | 1..127 | 1..121 | 136 | 26.8 | Plus |
Acp53C14b-PA | 132 | CG15616-PA | 1..127 | 1..121 | 136 | 26.8 | Plus |