Clone Sequence Records
BS14441.3prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS14441.3prime
ATGGTCTAGAAAGCTTTTAACCCTTGGCGGCGATGCACTGGTTGATCACC
TCGGCGAGGTGATTGTTCTCCAGGGCGGCGGCCACTCGTTCCTTGTCTGC
CAGCTGCTTGTTCACCGCCAGCTCGGAGGCGTGGGTGCCGGGCGTTATTT
CCACGGTGACCTTAAAGCGAGGTGGCAGCGAGCGGAGCAACTTCACCCGG
ATGGAGAGGCCAATCAAAGTGGCCATCGAGCAATGGGGAATCGTCGGGGT
GAAGCTGATGTGCACGGAATTCTGGCTATCGTTTATCCGGATTAGATCTT
CCTGCACCACATGCAGCTCCTCCAGGGTCAAAGGATGTTCCGGGTCATTA
ATATTTCTGATGAGATCGAAAATCTCTCGTTTGTCAAATGGATCGGGCAC
GTTTTCGTCTTCTTCGTTGGCGGTTAATACCCTTTCCTTGATTCTGTCGT
AGACATTGGGGTTGATGTTCTCGATTTCCGTGGGCATGTCGACTGATAAC
T
BS14441.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 471 | CG7949-RA | 1..471 | 487..17 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..544 | 487..17 | 2355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883488 | 367..17 | 1755 | 100 | Minus |
3L | 28110227 | 3L | 10882963..10883083 | 487..367 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:07:58 has no hits.
BS14441.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:14 Download gff for
BS14441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-PA | 1..471 | 17..487 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:50 Download gff for
BS14441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 12..495 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:52 Download gff for
BS14441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 12..495 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:52 Download gff for
BS14441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10882954..10883083 | 367..495 | 96 | -> | Minus |
3L | 10883139..10883490 | 12..366 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:50 Download gff for
BS14441.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876054..10876183 | 367..495 | 96 | -> | Minus |
arm_3L | 10876239..10876590 | 12..366 | 99 | | Minus |
BS14441.5prime Sequence
501 bp (501 high quality bases) assembled on 2006-10-13
> BS14441.5prime
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTTAAAAGCTTTCTAGAC
C
BS14441.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 471 | CG7949-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..544 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883488 | 137..487 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 10882963..10883083 | 17..137 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:30 has no hits.
BS14441.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:14 Download gff for
BS14441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-PA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:08 Download gff for
BS14441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 9..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:01 Download gff for
BS14441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 65..546 | 9..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:01 Download gff for
BS14441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10882954..10883083 | 9..137 | 96 | -> | Plus |
3L | 10883139..10883490 | 138..492 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:08 Download gff for
BS14441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876054..10876183 | 9..137 | 96 | -> | Plus |
arm_3L | 10876239..10876590 | 138..492 | 99 | | Plus |
BS14441.complete Sequence
503 bp assembled on 2006-11-01
GenBank Submission: FJ637664
> BS14441.complete
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTTAAAAGCTTTCTAGAC
CAT
BS14441.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 471 | CG7949-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-RA | 629 | CG7949-RA | 74..544 | 17..487 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10883138..10883488 | 137..487 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 10882963..10883083 | 17..137 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:09:48 has no hits.
BS14441.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:54 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:02 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:01 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 74..542 | 17..485 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:54 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 1..471 | 17..487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:14 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7949-RA | 74..542 | 17..485 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:14 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10883139..10883486 | 138..485 | 100 | | Plus |
3L | 10882963..10883083 | 17..137 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:01 Download gff for
BS14441.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10876063..10876183 | 17..137 | 100 | -> | Plus |
arm_3L | 10876239..10876586 | 138..485 | 100 | | Plus |
BS14441.pep Sequence
Translation from 16 to 486
> BS14441.pep
MPTEIENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPE
HPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKL
LRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQ
CIAAKG*
BS14441.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7949-PA | 156 | CG7949-PA | 1..156 | 1..156 | 799 | 100 | Plus |
CG30152-PD | 152 | CG30152-PD | 31..148 | 39..152 | 301 | 51.7 | Plus |
CG30152-PC | 218 | CG30152-PC | 97..214 | 39..152 | 301 | 51.7 | Plus |
CG30152-PB | 218 | CG30152-PB | 97..214 | 39..152 | 301 | 51.7 | Plus |
CG30152-PA | 218 | CG30152-PA | 97..214 | 39..152 | 301 | 51.7 | Plus |