Clone BS14441 Report

Search the DGRC for BS14441

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG7949-RA
Protein status:BS14441.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14441.3prime Sequence

501 bp (501 high quality bases) assembled on 2006-10-13

> BS14441.3prime
ATGGTCTAGAAAGCTTTTAACCCTTGGCGGCGATGCACTGGTTGATCACC
TCGGCGAGGTGATTGTTCTCCAGGGCGGCGGCCACTCGTTCCTTGTCTGC
CAGCTGCTTGTTCACCGCCAGCTCGGAGGCGTGGGTGCCGGGCGTTATTT
CCACGGTGACCTTAAAGCGAGGTGGCAGCGAGCGGAGCAACTTCACCCGG
ATGGAGAGGCCAATCAAAGTGGCCATCGAGCAATGGGGAATCGTCGGGGT
GAAGCTGATGTGCACGGAATTCTGGCTATCGTTTATCCGGATTAGATCTT
CCTGCACCACATGCAGCTCCTCCAGGGTCAAAGGATGTTCCGGGTCATTA
ATATTTCTGATGAGATCGAAAATCTCTCGTTTGTCAAATGGATCGGGCAC
GTTTTCGTCTTCTTCGTTGGCGGTTAATACCCTTTCCTTGATTCTGTCGT
AGACATTGGGGTTGATGTTCTCGATTTCCGTGGGCATGTCGACTGATAAC
T

BS14441.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 471 CG7949-RA 1..471 487..17 2355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..544 487..17 2355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883488 367..17 1755 100 Minus
3L 28110227 3L 10882963..10883083 487..367 605 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:58 has no hits.

BS14441.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:14 Download gff for BS14441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-PA 1..471 17..487 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:50 Download gff for BS14441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 12..495 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:52 Download gff for BS14441.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 12..495 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:52 Download gff for BS14441.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10882954..10883083 367..495 96 -> Minus
3L 10883139..10883490 12..366 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:50 Download gff for BS14441.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876054..10876183 367..495 96 -> Minus
arm_3L 10876239..10876590 12..366 99   Minus

BS14441.5prime Sequence

501 bp (501 high quality bases) assembled on 2006-10-13

> BS14441.5prime
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTTAAAAGCTTTCTAGAC
C

BS14441.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 471 CG7949-RA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..544 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883488 137..487 1755 100 Plus
3L 28110227 3L 10882963..10883083 17..137 605 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:59:30 has no hits.

BS14441.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:14 Download gff for BS14441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-PA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:08 Download gff for BS14441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 9..492 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:01 Download gff for BS14441.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 65..546 9..492 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:01 Download gff for BS14441.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10882954..10883083 9..137 96 -> Plus
3L 10883139..10883490 138..492 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:08 Download gff for BS14441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876054..10876183 9..137 96 -> Plus
arm_3L 10876239..10876590 138..492 99   Plus

BS14441.complete Sequence

503 bp assembled on 2006-11-01

GenBank Submission: FJ637664

> BS14441.complete
GAAGTTATCAGTCGACATGCCCACGGAAATCGAGAACATCAACCCCAATG
TCTACGACAGAATCAAGGAAAGGGTATTAACCGCCAACGAAGAAGACGAA
AACGTGCCCGATCCATTTGACAAACGAGAGATTTTCGATCTCATCAGAAA
TATTAATGACCCGGAACATCCTTTGACCCTGGAGGAGCTGCATGTGGTGC
AGGAAGATCTAATCCGGATAAACGATAGCCAGAATTCCGTGCACATCAGC
TTCACCCCGACGATTCCCCATTGCTCGATGGCCACTTTGATTGGCCTCTC
CATCCGGGTGAAGTTGCTCCGCTCGCTGCCACCTCGCTTTAAGGTCACCG
TGGAAATAACGCCCGGCACCCACGCCTCCGAGCTGGCGGTGAACAAGCAG
CTGGCAGACAAGGAACGAGTGGCCGCCGCCCTGGAGAACAATCACCTCGC
CGAGGTGATCAACCAGTGCATCGCCGCCAAGGGTTAAAAGCTTTCTAGAC
CAT

BS14441.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 471 CG7949-PA 1..471 17..487 2355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-RA 629 CG7949-RA 74..544 17..487 2355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10883138..10883488 137..487 1755 100 Plus
3L 28110227 3L 10882963..10883083 17..137 605 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:09:48 has no hits.

BS14441.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:54 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:02 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:01 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 74..542 17..485 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:54 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 1..471 17..487 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:14 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
CG7949-RA 74..542 17..485 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:14 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10883139..10883486 138..485 100   Plus
3L 10882963..10883083 17..137 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:01 Download gff for BS14441.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10876063..10876183 17..137 100 -> Plus
arm_3L 10876239..10876586 138..485 100   Plus

BS14441.pep Sequence

Translation from 16 to 486

> BS14441.pep
MPTEIENINPNVYDRIKERVLTANEEDENVPDPFDKREIFDLIRNINDPE
HPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKL
LRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQ
CIAAKG*

BS14441.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7949-PA 156 CG7949-PA 1..156 1..156 799 100 Plus
CG30152-PD 152 CG30152-PD 31..148 39..152 301 51.7 Plus
CG30152-PC 218 CG30152-PC 97..214 39..152 301 51.7 Plus
CG30152-PB 218 CG30152-PB 97..214 39..152 301 51.7 Plus
CG30152-PA 218 CG30152-PA 97..214 39..152 301 51.7 Plus