Clone Sequence Records
BS14443.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS14443.5prime
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TTAAAAGCTTTCTAGACC
BS14443.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PA | 438 | CG32971-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..664 | 15..454 | 2200 | 100 | Plus |
CG32971-RB | 810 | CG32971-RB | 286..725 | 15..454 | 2200 | 100 | Plus |
CG32971-RA | 731 | CG32971-RA | 207..646 | 15..454 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277917 | 15..454 | 2200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:11 has no hits.
BS14443.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:16 Download gff for
BS14443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-PA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:08 Download gff for
BS14443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 15..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:16 Download gff for
BS14443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 15..460 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:16 Download gff for
BS14443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277478..14277919 | 15..460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:08 Download gff for
BS14443.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277478..14277919 | 15..460 | 99 | | Plus |
BS14443.3prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS14443.3prime
ATGGTCTAGAAAGCTTTTAAACAAGTAAATCCTTTGAATCCAAGTCAGGT
CCACCGCTCTTTTCGTAGTACTCGTACTCCAGTTCGGACAGCTCCTCTTC
CAAATCCTTAACCATTTTGATAAGTGTTTGGTCATACTCGGTCACCTTGG
CATGCATTGCCTCCGATTGTCTATCCATTTCCTCTTCGATGTTGGAATAA
TCGTAAATAATCTGATACTCCTTGACATCATGGACTAGCTTAATTAGAGC
TTCTCCTGCGCGAACGAAATTGCCAGCACGCACCTGCATTTCAAAAGCAT
TCAATTCTTGTTCTGTATCATTTGTGATTTGGCCCGGAGTCCTCGGGGAA
ACTAATTTAAGGAGCTCCTCAAAGTTGAGCAACATGCTTAGGACGTTATC
CTTTAGCTGCGTTTTAAAGGATTTTAGCAGGGCCTCGTCCTTCGAGTCAG
ACATGTCGACTGATAACT
BS14443.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PA | 438 | CG32971-RA | 1..438 | 454..17 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..664 | 456..17 | 2200 | 100 | Minus |
CG32971-RB | 810 | CG32971-RB | 286..725 | 456..17 | 2200 | 100 | Minus |
CG32971-RA | 731 | CG32971-RA | 207..646 | 456..17 | 2200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277917 | 456..17 | 2200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:01 has no hits.
BS14443.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:15 Download gff for
BS14443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-PA | 1..438 | 17..454 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:53 Download gff for
BS14443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 11..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:58 Download gff for
BS14443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 207..648 | 11..456 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:58 Download gff for
BS14443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277478..14277919 | 11..456 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:53 Download gff for
BS14443.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277478..14277919 | 11..456 | 99 | | Minus |
BS14443.complete Sequence
470 bp assembled on 2006-11-01
GenBank Submission: FJ637665
> BS14443.complete
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TTAAAAGCTTTCTAGACCAT
BS14443.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 438 | CG32971-PC | 1..438 | 17..454 | 2190 | 100 | Plus |
CG32971-RB | 438 | CG32971-PB | 1..438 | 17..454 | 2190 | 100 | Plus |
CG32971-RA | 438 | CG32971-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-RC | 749 | CG32971-RC | 225..664 | 15..454 | 2200 | 100 | Plus |
CG32971-RB | 810 | CG32971-RB | 286..725 | 15..454 | 2200 | 100 | Plus |
CG32971-RA | 731 | CG32971-RA | 207..646 | 15..454 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14277478..14277917 | 15..454 | 2200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:48:22 has no hits.
BS14443.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:55 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RC | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:04 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RB | 312..753 | 15..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:19 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 209..644 | 17..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:55 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RB | 312..753 | 15..460 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:36 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32971-RA | 209..644 | 17..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:36 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14277480..14277915 | 17..452 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:19 Download gff for
BS14443.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14277480..14277915 | 17..452 | 100 | | Plus |
BS14443.pep Sequence
Translation from 16 to 453
> BS14443.pep
MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQE
LNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAM
HAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV*
BS14443.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32971-PC | 145 | CG32971-PC | 1..145 | 1..145 | 727 | 100 | Plus |
CG32971-PB | 145 | CG32971-PB | 1..145 | 1..145 | 727 | 100 | Plus |
CG32971-PA | 145 | CG32971-PA | 1..145 | 1..145 | 727 | 100 | Plus |
MED22-PA | 143 | CG3034-PA | 15..138 | 7..130 | 277 | 46.8 | Plus |