Clone BS14443 Report

Search the DGRC for BS14443

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG32971-RA
Protein status:BS14443.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14443.5prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS14443.5prime
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TTAAAAGCTTTCTAGACC

BS14443.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PA 438 CG32971-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..664 15..454 2200 100 Plus
CG32971-RB 810 CG32971-RB 286..725 15..454 2200 100 Plus
CG32971-RA 731 CG32971-RA 207..646 15..454 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277917 15..454 2200 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:53:11 has no hits.

BS14443.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:16 Download gff for BS14443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:08 Download gff for BS14443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 15..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:16 Download gff for BS14443.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 15..460 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:16 Download gff for BS14443.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14277478..14277919 15..460 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:08 Download gff for BS14443.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277478..14277919 15..460 99   Plus

BS14443.3prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS14443.3prime
ATGGTCTAGAAAGCTTTTAAACAAGTAAATCCTTTGAATCCAAGTCAGGT
CCACCGCTCTTTTCGTAGTACTCGTACTCCAGTTCGGACAGCTCCTCTTC
CAAATCCTTAACCATTTTGATAAGTGTTTGGTCATACTCGGTCACCTTGG
CATGCATTGCCTCCGATTGTCTATCCATTTCCTCTTCGATGTTGGAATAA
TCGTAAATAATCTGATACTCCTTGACATCATGGACTAGCTTAATTAGAGC
TTCTCCTGCGCGAACGAAATTGCCAGCACGCACCTGCATTTCAAAAGCAT
TCAATTCTTGTTCTGTATCATTTGTGATTTGGCCCGGAGTCCTCGGGGAA
ACTAATTTAAGGAGCTCCTCAAAGTTGAGCAACATGCTTAGGACGTTATC
CTTTAGCTGCGTTTTAAAGGATTTTAGCAGGGCCTCGTCCTTCGAGTCAG
ACATGTCGACTGATAACT

BS14443.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PA 438 CG32971-RA 1..438 454..17 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..664 456..17 2200 100 Minus
CG32971-RB 810 CG32971-RB 286..725 456..17 2200 100 Minus
CG32971-RA 731 CG32971-RA 207..646 456..17 2200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277917 456..17 2200 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:08:01 has no hits.

BS14443.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:15 Download gff for BS14443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-PA 1..438 17..454 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:53 Download gff for BS14443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 11..456 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:58 Download gff for BS14443.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 207..648 11..456 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:58 Download gff for BS14443.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14277478..14277919 11..456 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:53 Download gff for BS14443.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277478..14277919 11..456 99   Minus

BS14443.complete Sequence

470 bp assembled on 2006-11-01

GenBank Submission: FJ637665

> BS14443.complete
GAAGTTATCAGTCGACATGTCTGACTCGAAGGACGAGGCCCTGCTAAAAT
CCTTTAAAACGCAGCTAAAGGATAACGTCCTAAGCATGTTGCTCAACTTT
GAGGAGCTCCTTAAATTAGTTTCCCCGAGGACTCCGGGCCAAATCACAAA
TGATACAGAACAAGAATTGAATGCTTTTGAAATGCAGGTGCGTGCTGGCA
ATTTCGTTCGCGCAGGAGAAGCTCTAATTAAGCTAGTCCATGATGTCAAG
GAGTATCAGATTATTTACGATTATTCCAACATCGAAGAGGAAATGGATAG
ACAATCGGAGGCAATGCATGCCAAGGTGACCGAGTATGACCAAACACTTA
TCAAAATGGTTAAGGATTTGGAAGAGGAGCTGTCCGAACTGGAGTACGAG
TACTACGAAAAGAGCGGTGGACCTGACTTGGATTCAAAGGATTTACTTGT
TTAAAAGCTTTCTAGACCAT

BS14443.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 438 CG32971-PC 1..438 17..454 2190 100 Plus
CG32971-RB 438 CG32971-PB 1..438 17..454 2190 100 Plus
CG32971-RA 438 CG32971-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-RC 749 CG32971-RC 225..664 15..454 2200 100 Plus
CG32971-RB 810 CG32971-RB 286..725 15..454 2200 100 Plus
CG32971-RA 731 CG32971-RA 207..646 15..454 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14277478..14277917 15..454 2200 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:48:22 has no hits.

BS14443.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:55 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RC 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:04 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RB 312..753 15..460 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:19 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 209..644 17..452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:55 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RB 312..753 15..460 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:36 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
CG32971-RA 209..644 17..452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:36 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14277480..14277915 17..452 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:19 Download gff for BS14443.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14277480..14277915 17..452 100   Plus

BS14443.pep Sequence

Translation from 16 to 453

> BS14443.pep
MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQE
LNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAM
HAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV*

BS14443.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32971-PC 145 CG32971-PC 1..145 1..145 727 100 Plus
CG32971-PB 145 CG32971-PB 1..145 1..145 727 100 Plus
CG32971-PA 145 CG32971-PA 1..145 1..145 727 100 Plus
MED22-PA 143 CG3034-PA 15..138 7..130 277 46.8 Plus