Clone BS14445 Report

Search the DGRC for BS14445

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG13063-RA
Protein status:BS14445.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14445.3prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-13

> BS14445.3prime
ATGGTCTAGAAAGCTTTTACCAGCTGGAGTTGTAGACAACCGGAGAAGCG
GCGGCATAGGAGGTGTGCACCACCGGGGCGGCATAGCTGGTGTGGACAAC
GGGAGCGGCAGCATAGGCGGTATGCACCACTGGGGCAGCTGCAGCATAGC
TGACCACCGGAGTGGACTTCACCACCGGGGCCACGATGTCCTCCACTACA
TGCGAGTGGCTGTGCACCACCGACTGGCTCTGGTGGGAGACCGATGTGGG
AATGCTGCTGACCACAGAACCCACCTTGGCCAGAGAGCGCTCCTGGACAA
CGGTTGTGGCAGCTGGAGCGGCATAAACCAGAGGAGACTCATAAAGATGA
CCGGGACGAGCGACAGCTACGGCGAGGAGAGCAGACAACACCACCAATTT
GAACATGTCGACTGATAACT

BS14445.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 390 CG13063-RA 1..390 406..17 1950 100 Minus
CG13043-PA 447 CG13043-RA 235..323 175..87 245 91 Minus
CG13043-PA 447 CG13043-RA 174..200 236..210 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..437 408..17 1960 100 Minus
CG13043-RA 646 CG13043-RA 80..457 406..38 730 80.4 Minus
CG13044-RA 624 CG13044-RA 66..307 406..162 230 73.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307098 395..17 1895 100 Minus
3L 28110227 3L 16305469..16305791 87..406 695 81.7 Plus
3L 28110227 3L 16302851..16302978 209..336 205 77.3 Plus
Blast to na_te.dros performed on 2015-02-02 17:53:44 has no hits.

BS14445.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:17 Download gff for BS14445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-PA 1..390 17..406 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:24 Download gff for BS14445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 17..416 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:07 Download gff for BS14445.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 17..416 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:07 Download gff for BS14445.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16306721..16307098 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:24 Download gff for BS14445.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299821..16300198 17..394 100   Minus

BS14445.5prime Sequence

420 bp (420 high quality bases) assembled on 2006-10-13

> BS14445.5prime
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGTAAAAGCTTTCTAGACC

BS14445.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 390 CG13063-RA 1..390 17..406 1950 100 Plus
CG13043-PA 447 CG13043-RA 235..323 248..336 245 91 Plus
CG13043-PA 447 CG13043-RA 174..200 187..213 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..437 15..406 1960 100 Plus
CG13043-RA 646 CG13043-RA 80..457 17..385 730 80.4 Plus
CG13044-RA 624 CG13044-RA 66..307 17..261 230 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307098 28..406 1895 100 Plus
3L 28110227 3L 16305469..16305791 336..17 695 81.7 Minus
3L 28110227 3L 16302851..16302978 214..87 205 77.3 Minus
Blast to na_te.dros performed on 2015-02-11 17:29:22 has no hits.

BS14445.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:18 Download gff for BS14445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-PA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:09 Download gff for BS14445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 7..406 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:11 Download gff for BS14445.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 38..437 7..406 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:11 Download gff for BS14445.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16306721..16307098 29..406 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:09 Download gff for BS14445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299821..16300198 29..406 100   Plus

BS14445.complete Sequence

422 bp assembled on 2006-11-01

GenBank Submission: FJ637666

> BS14445.complete
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGTAAAAGCTTTCTAGACCAT

BS14445.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 390 CG13063-PA 1..390 17..406 1950 100 Plus
CG13043-RA 447 CG13043-PA 1..323 17..336 695 81.7 Plus
CG13044-RA 468 CG13044-PA 1..198 17..214 210 73.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-RA 544 CG13063-RA 46..437 15..406 1960 100 Plus
CG13043-RA 646 CG13043-RA 80..402 17..336 695 81.7 Plus
CG13044-RA 624 CG13044-RA 66..263 17..214 210 73.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16306720..16307098 28..406 1895 100 Plus
3L 28110227 3L 16305469..16305791 336..17 695 81.7 Minus
3L 28110227 3L 16302851..16302978 214..87 205 77.3 Minus
Blast to na_te.dros performed on 2014-11-27 16:18:33 has no hits.

BS14445.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:38 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:22 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:55 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 53..435 22..404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:38 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 1..390 17..406 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:37 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
CG13063-RA 53..435 22..404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:37 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16306717..16307096 22..404 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:55 Download gff for BS14445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16299817..16300196 22..404 98   Plus

BS14445.pep Sequence

Translation from 16 to 405

> BS14445.pep
MFKLVVLSALLAVAVARPGHLYESPLVYAAPAATTVVQERSLAKVGSVVS
SIPTSVSHQSQSVVHSHSHVVEDIVAPVVKSTPVVSYAAAAPVVHTAYAA
APVVHTSYAAPVVHTSYAAASPVVYNSSW*

BS14445.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13063-PA 129 CG13063-PA 1..129 1..129 635 100 Plus
CG13043-PA 148 CG13043-PA 1..130 1..127 530 85.4 Plus
CG13044-PA 155 CG13044-PA 1..146 1..127 340 56.5 Plus
CG13042-PA 117 CG13042-PA 1..102 1..102 243 50 Plus
CG13060-PA 131 CG13060-PA 1..116 1..124 190 46.9 Plus