Clone Sequence Records
BS14445.3prime Sequence
420 bp (420 high quality bases) assembled on 2006-10-13
> BS14445.3prime
ATGGTCTAGAAAGCTTTTACCAGCTGGAGTTGTAGACAACCGGAGAAGCG
GCGGCATAGGAGGTGTGCACCACCGGGGCGGCATAGCTGGTGTGGACAAC
GGGAGCGGCAGCATAGGCGGTATGCACCACTGGGGCAGCTGCAGCATAGC
TGACCACCGGAGTGGACTTCACCACCGGGGCCACGATGTCCTCCACTACA
TGCGAGTGGCTGTGCACCACCGACTGGCTCTGGTGGGAGACCGATGTGGG
AATGCTGCTGACCACAGAACCCACCTTGGCCAGAGAGCGCTCCTGGACAA
CGGTTGTGGCAGCTGGAGCGGCATAAACCAGAGGAGACTCATAAAGATGA
CCGGGACGAGCGACAGCTACGGCGAGGAGAGCAGACAACACCACCAATTT
GAACATGTCGACTGATAACT
BS14445.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 390 | CG13063-RA | 1..390 | 406..17 | 1950 | 100 | Minus |
CG13043-PA | 447 | CG13043-RA | 235..323 | 175..87 | 245 | 91 | Minus |
CG13043-PA | 447 | CG13043-RA | 174..200 | 236..210 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..437 | 408..17 | 1960 | 100 | Minus |
CG13043-RA | 646 | CG13043-RA | 80..457 | 406..38 | 730 | 80.4 | Minus |
CG13044-RA | 624 | CG13044-RA | 66..307 | 406..162 | 230 | 73.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307098 | 395..17 | 1895 | 100 | Minus |
3L | 28110227 | 3L | 16305469..16305791 | 87..406 | 695 | 81.7 | Plus |
3L | 28110227 | 3L | 16302851..16302978 | 209..336 | 205 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:53:44 has no hits.
BS14445.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:17 Download gff for
BS14445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-PA | 1..390 | 17..406 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:24 Download gff for
BS14445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 17..416 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:07 Download gff for
BS14445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 17..416 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:07 Download gff for
BS14445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306721..16307098 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:24 Download gff for
BS14445.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299821..16300198 | 17..394 | 100 | | Minus |
BS14445.5prime Sequence
420 bp (420 high quality bases) assembled on 2006-10-13
> BS14445.5prime
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGTAAAAGCTTTCTAGACC
BS14445.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 390 | CG13063-RA | 1..390 | 17..406 | 1950 | 100 | Plus |
CG13043-PA | 447 | CG13043-RA | 235..323 | 248..336 | 245 | 91 | Plus |
CG13043-PA | 447 | CG13043-RA | 174..200 | 187..213 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..437 | 15..406 | 1960 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 80..457 | 17..385 | 730 | 80.4 | Plus |
CG13044-RA | 624 | CG13044-RA | 66..307 | 17..261 | 230 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307098 | 28..406 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 16305469..16305791 | 336..17 | 695 | 81.7 | Minus |
3L | 28110227 | 3L | 16302851..16302978 | 214..87 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:29:22 has no hits.
BS14445.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:18 Download gff for
BS14445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-PA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:09 Download gff for
BS14445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 7..406 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:07:11 Download gff for
BS14445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 38..437 | 7..406 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:07:11 Download gff for
BS14445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306721..16307098 | 29..406 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:09 Download gff for
BS14445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299821..16300198 | 29..406 | 100 | | Plus |
BS14445.complete Sequence
422 bp assembled on 2006-11-01
GenBank Submission: FJ637666
> BS14445.complete
GAAGTTATCAGTCGACATGTTCAAATTGGTGGTGTTGTCTGCTCTCCTCG
CCGTAGCTGTCGCTCGTCCCGGTCATCTTTATGAGTCTCCTCTGGTTTAT
GCCGCTCCAGCTGCCACAACCGTTGTCCAGGAGCGCTCTCTGGCCAAGGT
GGGTTCTGTGGTCAGCAGCATTCCCACATCGGTCTCCCACCAGAGCCAGT
CGGTGGTGCACAGCCACTCGCATGTAGTGGAGGACATCGTGGCCCCGGTG
GTGAAGTCCACTCCGGTGGTCAGCTATGCTGCAGCTGCCCCAGTGGTGCA
TACCGCCTATGCTGCCGCTCCCGTTGTCCACACCAGCTATGCCGCCCCGG
TGGTGCACACCTCCTATGCCGCCGCTTCTCCGGTTGTCTACAACTCCAGC
TGGTAAAAGCTTTCTAGACCAT
BS14445.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 390 | CG13063-PA | 1..390 | 17..406 | 1950 | 100 | Plus |
CG13043-RA | 447 | CG13043-PA | 1..323 | 17..336 | 695 | 81.7 | Plus |
CG13044-RA | 468 | CG13044-PA | 1..198 | 17..214 | 210 | 73.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-RA | 544 | CG13063-RA | 46..437 | 15..406 | 1960 | 100 | Plus |
CG13043-RA | 646 | CG13043-RA | 80..402 | 17..336 | 695 | 81.7 | Plus |
CG13044-RA | 624 | CG13044-RA | 66..263 | 17..214 | 210 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16306720..16307098 | 28..406 | 1895 | 100 | Plus |
3L | 28110227 | 3L | 16305469..16305791 | 336..17 | 695 | 81.7 | Minus |
3L | 28110227 | 3L | 16302851..16302978 | 214..87 | 205 | 77.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:18:33 has no hits.
BS14445.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:43:38 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:51:22 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:55 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 53..435 | 22..404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:43:38 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 1..390 | 17..406 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:37 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13063-RA | 53..435 | 22..404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:37 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16306717..16307096 | 22..404 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:55 Download gff for
BS14445.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16299817..16300196 | 22..404 | 98 | | Plus |
BS14445.pep Sequence
Translation from 16 to 405
> BS14445.pep
MFKLVVLSALLAVAVARPGHLYESPLVYAAPAATTVVQERSLAKVGSVVS
SIPTSVSHQSQSVVHSHSHVVEDIVAPVVKSTPVVSYAAAAPVVHTAYAA
APVVHTSYAAPVVHTSYAAASPVVYNSSW*
BS14445.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13063-PA | 129 | CG13063-PA | 1..129 | 1..129 | 635 | 100 | Plus |
CG13043-PA | 148 | CG13043-PA | 1..130 | 1..127 | 530 | 85.4 | Plus |
CG13044-PA | 155 | CG13044-PA | 1..146 | 1..127 | 340 | 56.5 | Plus |
CG13042-PA | 117 | CG13042-PA | 1..102 | 1..102 | 243 | 50 | Plus |
CG13060-PA | 131 | CG13060-PA | 1..116 | 1..124 | 190 | 46.9 | Plus |