Clone BS14451 Report

Search the DGRC for BS14451

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG13010-RA
Protein status:BS14451.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14451.3prime Sequence

435 bp (435 high quality bases) assembled on 2006-10-13

> BS14451.3prime
ATGGTCTAGAAAGCTTCTAGAGCGACTCAATGCTGGACTTCTTGTTCTTG
CTCATGCCAAAGTATCCCCACCAGGAGCGGCGCGACCTCGCCTCGTCGGC
TGGAGCAGCACTGGTGGCCATCGAGGCGGTGGCGTTGCGCACAGCTCCTC
GGGAGGCGGTCGCCAGAGGTTGCTCCGCATTATCCTCATTGCTGCTGACA
CTGGACTCAGGAGGATTGGCAGCGGTGGTACTACGGCGACCGGCGGACTT
GCCGGATTTAGCCGACTTCGCTGACTTCGCTGACTTGGCGGACTTGACGG
TGTCCATGGAGACCTGGGTCACATTGGCCAGGCTGGGCAGTGGGGTGACG
CCTCCATCGCGGGTGCGACGCTGCCGGCGATCGCCTCCACCGAAGAGCTT
ACTCAAATACGGCATGCACATGTCGACTGATAACT

BS14451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-PA 405 CG13010-RA 1..405 421..17 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-RA 681 CG13010-RA 103..508 421..16 2030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16678438..16678843 16..421 2030 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:52:37 has no hits.

BS14451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:21 Download gff for BS14451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-PA 1..405 17..421 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:14 Download gff for BS14451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 99..510 12..429 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:58 Download gff for BS14451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 99..510 12..429 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:58 Download gff for BS14451.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16678436..16678847 12..429 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:14 Download gff for BS14451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16572469..16572880 12..429 98   Plus

BS14451.5prime Sequence

435 bp (435 high quality bases) assembled on 2006-10-13

> BS14451.5prime
GAAGTTATCAGTCGACATGTGCATGCCGTATTTGAGTAAGCTCTTCGGTG
GAGGCGATCGCCGGCAGCGTCGCACCCGCGATGGAGGCGTCACCCCACTG
CCCAGCCTGGCCAATGTGACCCAGGTCTCCATGGACACCGTCAAGTCCGC
CAAGTCAGCGAAGTCAGCGAAGTCGGCTAAATCCGGCAAGTCCGCCGGTC
GCCGTAGTACCACCGCTGCCAATCCTCCTGAGTCCAGTGTCAGCAGCAAT
GAGGATAATGCGGAGCAACCTCTGGCGACCGCCTCCCGAGGAGCTGTGCG
CAACGCCACCGCCTCGATGGCCACCAGTGCTGCTCCAGCCGACGAGGCGA
GGTCGCGCCGCTCCTGGTGGGGATACTTTGGCATGAGCAAGAACAAGAAG
TCCAGCATTGAGTCGCTCTAGAAGCTTTCTAGACC

BS14451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-PA 405 CG13010-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:36:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-RA 681 CG13010-RA 103..508 17..422 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16678438..16678843 422..17 2030 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:36:09 has no hits.

BS14451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:22 Download gff for BS14451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-PA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:28 Download gff for BS14451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 99..510 9..426 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:50 Download gff for BS14451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 99..510 9..426 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:50 Download gff for BS14451.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16678436..16678847 9..426 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:28 Download gff for BS14451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16572469..16572880 9..426 98   Minus

BS14451.complete Sequence

437 bp assembled on 2006-11-01

GenBank Submission: FJ637668

> BS14451.complete
GAAGTTATCAGTCGACATGTGCATGCCGTATTTGAGTAAGCTCTTCGGTG
GAGGCGATCGCCGGCAGCGTCGCACCCGCGATGGAGGCGTCACCCCACTG
CCCAGCCTGGCCAATGTGACCCAGGTCTCCATGGACACCGTCAAGTCCGC
CAAGTCAGCGAAGTCAGCGAAGTCGGCTAAATCCGGCAAGTCCGCCGGTC
GCCGTAGTACCACCGCTGCCAATCCTCCTGAGTCCAGTGTCAGCAGCAAT
GAGGATAATGCGGAGCAACCTCTGGCGACCGCCTCCCGAGGAGCTGTGCG
CAACGCCACCGCCTCGATGGCCACCAGTGCTGCTCCAGCCGACGAGGCGA
GGTCGCGCCGCTCCTGGTGGGGATACTTTGGCATGAGCAAGAACAAGAAG
TCCAGCATTGAGTCGCTCTAGAAGCTTTCTAGACCAT

BS14451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-RA 405 CG13010-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-RA 681 CG13010-RA 103..508 17..422 2030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16678438..16678843 422..17 2030 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:59:08 has no hits.

BS14451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:24 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:50:58 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:06 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 103..507 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:24 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 1..405 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:41 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
CG13010-RA 103..507 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:41 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
X 16678439..16678843 17..421 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:06 Download gff for BS14451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16572472..16572876 17..421 100   Minus

BS14451.pep Sequence

Translation from 16 to 420

> BS14451.pep
MCMPYLSKLFGGGDRRQRRTRDGGVTPLPSLANVTQVSMDTVKSAKSAKS
AKSAKSGKSAGRRSTTAANPPESSVSSNEDNAEQPLATASRGAVRNATAS
MATSAAPADEARSRRSWWGYFGMSKNKKSSIESL*

BS14451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13010-PA 134 CG13010-PA 1..134 1..134 672 100 Plus