Clone BS14452 Report

Search the DGRC for BS14452

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG15198-RA
Protein status:BS14452.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14452.3prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS14452.3prime
ATGGTCTAGAAAGCTTCTAACCACAGCCAGGACCATCGATGCGAGCGCCC
TCCATGCAGGGATACGGCTTGCATGTGGTGTTGTTGGAAGACGACGCACC
CTGATCCCCTCCAGTGCCCGCTGCTCCGCCCATACGAGCGGCGGCGGCCA
GGACCTCGACGGTGCTATATATGTTGGCCACGATTACCATGCCGCCCGCA
GCTCCGCTGGGCAAACTGTTGGGATCCGTTGCATCCGTTGGAGAACCATT
GGTGGTCGTAGTAGTTGGCTGACAGTTGGGTGAGCATTGCTGGCCGGGAA
TCTCGGGAATGGCACACGCCTTGCTGGGATGTGGGCCAATGTAGAAGGGA
TTGAAGGGTTTGTCGTCGGACTCGAGGGTTTTCATGTCGACTGATAACT

BS14452.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 369 CG15198-RA 1..369 385..17 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..544 386..15 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248779 386..15 1860 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:36:19 has no hits.

BS14452.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:22 Download gff for BS14452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-PA 1..369 17..385 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:29 Download gff for BS14452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..544 15..393 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:53 Download gff for BS14452.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..544 15..393 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:53 Download gff for BS14452.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11248402..11248779 15..393 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:29 Download gff for BS14452.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142435..11142812 15..393 99   Minus

BS14452.5prime Sequence

399 bp (399 high quality bases) assembled on 2006-10-13

> BS14452.5prime
GAAGTTATCAGTCGACATGAAAACCCTCGAGTCCGACGACAAACCCTTCA
ATCCCTTCTACATTGGCCCACATCCCAGCAAGGCGTGTGCCATTCCCGAG
ATTCCCGGCCAGCAATGCTCACCCAACTGTCAGCCAACTACTACGACCAC
CAATGGTTCTCCAACGGATGCAACGGATCCCAACAGTTTGCCCAGCGGAG
CTGCGGGCGGCATGGTAATCGTGGCCAACATATATAGCACCGTCGAGGTC
CTGGCCGCCGCCGCTCGTATGGGCGGAGCAGCGGGCACTGGAGGGGATCA
GGGTGCGTCGTCTTCCAACAACACCACATGCAAGCCGTATCCCTGCATGG
AGGGCGCTCGCATCGATGGTCCTGGCTGTGGTTAGAAGCTTTCTAGACC

BS14452.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 369 CG15198-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..544 16..387 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248779 16..387 1860 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:06:15 has no hits.

BS14452.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:23 Download gff for BS14452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-PA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:14 Download gff for BS14452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..544 9..387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:38 Download gff for BS14452.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 167..544 9..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:38 Download gff for BS14452.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11248402..11248779 9..387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:14 Download gff for BS14452.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142435..11142812 9..387 99   Plus

BS14452.complete Sequence

401 bp assembled on 2006-11-01

GenBank Submission: FJ637669

> BS14452.complete
GAAGTTATCAGTCGACATGAAAACCCTCGAGTCCGACGACAAACCCTTCA
ATCCCTTCTACATTGGCCCACATCCCAGCAAGGCGTGTGCCATTCCCGAG
ATTCCCGGCCAGCAATGCTCACCCAACTGTCAGCCAACTACTACGACCAC
CAATGGTTCTCCAACGGATGCAACGGATCCCAACAGTTTGCCCAGCGGAG
CTGCGGGCGGCATGGTAATCGTGGCCAACATATATAGCACCGTCGAGGTC
CTGGCCGCCGCCGCTCGTATGGGCGGAGCAGCGGGCACTGGAGGGGATCA
GGGTGCGTCGTCTTCCAACAACACCACATGCAAGCCGTATCCCTGCATGG
AGGGCGCTCGCATCGATGGTCCTGGCTGTGGTTAGAAGCTTTCTAGACCA
T

BS14452.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 369 CG15198-PA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-RA 650 CG15198-RA 173..544 16..387 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11248408..11248779 16..387 1860 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:09:57 has no hits.

BS14452.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:15 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:26 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:50 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 174..542 17..385 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:15 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 1..369 17..385 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:39 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
CG15198-RA 174..542 17..385 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:39 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
X 11248409..11248777 17..385 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:50 Download gff for BS14452.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11142442..11142810 17..385 100   Plus

BS14452.pep Sequence

Translation from 16 to 384

> BS14452.pep
MKTLESDDKPFNPFYIGPHPSKACAIPEIPGQQCSPNCQPTTTTTNGSPT
DATDPNSLPSGAAGGMVIVANIYSTVEVLAAAARMGGAAGTGGDQGASSS
NNTTCKPYPCMEGARIDGPGCG*

BS14452.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15198-PA 122 CG15198-PA 1..122 1..122 665 100 Plus