Clone Sequence Records
BS14453.3prime Sequence
381 bp (381 high quality bases) assembled on 2006-10-13
> BS14453.3prime
ATGGTCTAGAAAGCTTCTAGTATTCGTCGGAGCACTCGAGTTGGGGACAG
CACTCGGGGAACTTGAAATCATAGTCGTTGGGTGAGAGGTGGCAGCCAGG
TCGCGGCCATGGCTGTTTGTCGCAGTGGCGTATCAACAGCAGATAGTCAT
CGGTGCACTCCAAGCGAATGCAGTAGCCCTGCTGACCGGAGGGCAGAACG
TAGCCATTGAGTGGAACGGCCAGGTCCAACTCCTCGTAGAGGCAGTGCTC
CGCCAGGCTAGGGTGCTGCGTGTGACCACGATACTGGGTGCTGAACCCAT
TGCCGTCCACCGATGCGGCCAGCAGACAGGCCACAAAAGCTAGGGACATC
CAAGCTGCTCCGGACATGTCGACTGATAACT
BS14453.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-PA | 351 | CG15199-RA | 1..351 | 367..17 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-RB | 522 | CG15199-RB | 25..377 | 368..16 | 1765 | 100 | Minus |
| CG15199-RA | 664 | CG15199-RA | 167..519 | 368..16 | 1765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11140790..11141032 | 126..368 | 1215 | 100 | Plus |
| X | 23542271 | X | 11140619..11140728 | 16..125 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:43:44 has no hits.
BS14453.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:23 Download gff for
BS14453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-PA | 1..351 | 17..367 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:07 Download gff for
BS14453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 16..374 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:58:56 Download gff for
BS14453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 16..374 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:58:56 Download gff for
BS14453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11140790..11141038 | 126..374 | 98 | | Plus |
| X | 11140619..11140728 | 16..125 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:07 Download gff for
BS14453.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11034652..11034761 | 16..125 | 100 | <- | Plus |
| arm_X | 11034823..11035071 | 126..374 | 98 | | Plus |
BS14453.5prime Sequence
381 bp (381 high quality bases) assembled on 2006-10-13
> BS14453.5prime
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACTAGAAGCTTTCTAGACC
BS14453.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-PA | 351 | CG15199-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-RB | 522 | CG15199-RB | 25..377 | 16..368 | 1765 | 100 | Plus |
| CG15199-RA | 664 | CG15199-RA | 167..519 | 16..368 | 1765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11140790..11141032 | 258..16 | 1215 | 100 | Minus |
| X | 23542271 | X | 11140619..11140728 | 368..259 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:06:38 has no hits.
BS14453.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:24 Download gff for
BS14453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-PA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:21 Download gff for
BS14453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 10..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:30 Download gff for
BS14453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 10..368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:30 Download gff for
BS14453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11140619..11140728 | 259..368 | 100 | <- | Minus |
| X | 11140790..11141038 | 10..258 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:21 Download gff for
BS14453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11034652..11034761 | 259..368 | 100 | <- | Minus |
| arm_X | 11034823..11035071 | 10..258 | 98 | | Minus |
BS14453.complete Sequence
383 bp assembled on 2006-11-01
GenBank Submission: FJ637670
> BS14453.complete
GAAGTTATCAGTCGACATGTCCGGAGCAGCTTGGATGTCCCTAGCTTTTG
TGGCCTGTCTGCTGGCCGCATCGGTGGACGGCAATGGGTTCAGCACCCAG
TATCGTGGTCACACGCAGCACCCTAGCCTGGCGGAGCACTGCCTCTACGA
GGAGTTGGACCTGGCCGTTCCACTCAATGGCTACGTTCTGCCCTCCGGTC
AGCAGGGCTACTGCATTCGCTTGGAGTGCACCGATGACTATCTGCTGTTG
ATACGCCACTGCGACAAACAGCCATGGCCGCGACCTGGCTGCCACCTCTC
ACCCAACGACTATGATTTCAAGTTCCCCGAGTGCTGTCCCCAACTCGAGT
GCTCCGACGAATACTAGAAGCTTTCTAGACCAT
BS14453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-RB | 351 | CG15199-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG15199-RA | 351 | CG15199-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-RB | 522 | CG15199-RB | 25..377 | 16..368 | 1765 | 100 | Plus |
| CG15199-RA | 664 | CG15199-RA | 167..519 | 16..368 | 1765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11140790..11141032 | 258..16 | 1215 | 100 | Minus |
| X | 23542271 | X | 11140619..11140728 | 368..259 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:04 has no hits.
BS14453.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:21 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 1..351 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:32 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 10..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:05 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 168..518 | 17..367 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:21 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 161..519 | 10..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:16 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15199-RA | 168..518 | 17..367 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:16 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11140620..11140728 | 259..367 | 100 | <- | Minus |
| X | 11140790..11141031 | 17..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:05 Download gff for
BS14453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11034653..11034761 | 259..367 | 100 | <- | Minus |
| arm_X | 11034823..11035064 | 17..258 | 100 | | Minus |
BS14453.pep Sequence
Translation from 16 to 366
> BS14453.pep
MSGAAWMSLAFVACLLAASVDGNGFSTQYRGHTQHPSLAEHCLYEELDLA
VPLNGYVLPSGQQGYCIRLECTDDYLLLIRHCDKQPWPRPGCHLSPNDYD
FKFPECCPQLECSDEY*
BS14453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15199-PB | 116 | CG15199-PB | 1..116 | 1..116 | 661 | 100 | Plus |
| CG15199-PA | 116 | CG15199-PA | 1..116 | 1..116 | 661 | 100 | Plus |
| CG15202-PB | 115 | CG15202-PB | 3..109 | 10..114 | 171 | 37.2 | Plus |
| CG15202-PA | 115 | CG15202-PA | 3..109 | 10..114 | 171 | 37.2 | Plus |
