Clone BS14455 Report

Search the DGRC for BS14455

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG5157-RA
Protein status:BS14455.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14455.5prime Sequence

390 bp (390 high quality bases) assembled on 2006-10-13

> BS14455.5prime
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCTAGAAGCTTTCTAGACC

BS14455.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 360 CG5157-RA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1178 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136702..16137061 376..17 1800 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:01:52 has no hits.

BS14455.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:25 Download gff for BS14455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-PA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:41 Download gff for BS14455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1188 7..383 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:33 Download gff for BS14455.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1188 7..383 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:33 Download gff for BS14455.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16136692..16137065 11..383 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:41 Download gff for BS14455.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129792..16130165 11..383 97 <- Minus

BS14455.3prime Sequence

390 bp (390 high quality bases) assembled on 2006-10-13

> BS14455.3prime
ATGGTCTAGAAAGCTTCTAGCAGCAACAGAAACCGGAGGAGCTATTCTTC
GCGGGTTCGGGATCTTCGGATATTGTGTTTGCCGTCGGCTTTGCTGCACC
ATTGGACGTTGGCTGCACTTGAATGGGTGCAGCTGAGTTGATTTCTCCGA
TTTTGTAGTTCTTTAGATCCTTTTCTGCGTCGGAGGAATGGCCTGCCTGC
TTGAAGGCCTTGGTGGCATCCTTGCCGCCATATTCGAGTAGTGCTTCACT
GCCGCCAGGATGCTCGCCGAGGAACTTGGTTACATCGTACACGTTCCCCT
TGATGATCAGCCAGCAGGGTTTGCCATTCTTGCCGTTCTGCTGGGCCACC
TCCGAGAGTTCGTACAACTGTGACATGTCGACTGATAACT

BS14455.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 360 CG5157-RA 1..360 376..17 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1178 376..17 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136702..16137061 17..376 1800 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:18:26 has no hits.

BS14455.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:24 Download gff for BS14455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-PA 1..360 17..376 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:12 Download gff for BS14455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1188 10..386 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:22 Download gff for BS14455.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1188 10..386 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:22 Download gff for BS14455.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16136692..16137065 10..382 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:12 Download gff for BS14455.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129792..16130165 10..382 97 <- Plus

BS14455.complete Sequence

392 bp assembled on 2006-11-01

GenBank Submission: FJ637671

> BS14455.complete
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCTAGAAGCTTTCTAGACCAT

BS14455.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 360 CG5157-PA 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-RA 1393 CG5157-RA 819..1178 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16136702..16137061 376..17 1800 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:44:50 has no hits.

BS14455.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:22 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:34 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 810..1188 7..383 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:48 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 819..1178 17..376 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:22 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 1..360 17..376 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:12 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
CG5157-RA 819..1178 17..376 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:12 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16136702..16137061 17..376 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:48 Download gff for BS14455.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16129802..16130161 17..376 100   Minus

BS14455.pep Sequence

Translation from 16 to 375

> BS14455.pep
MSQLYELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEYG
GKDATKAFKQAGHSSDAEKDLKNYKIGEINSAAPIQVQPTSNGAAKPTAN
TISEDPEPAKNSSSGFCCC*

BS14455.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5157-PA 119 CG5157-PA 1..119 1..119 633 100 Plus
Cyt-b5-PB 134 CG2140-PB 6..110 2..112 216 42.3 Plus
CG3566-PD 106 CG3566-PD 1..99 1..97 201 45.1 Plus
CG3566-PB 117 CG3566-PB 1..89 1..91 192 45.1 Plus
CG3566-PC 89 CG3566-PC 1..80 1..82 191 47.6 Plus