Clone Sequence Records
BS14455.5prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-13
> BS14455.5prime
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCTAGAAGCTTTCTAGACC
BS14455.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 360 | CG5157-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1178 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136702..16137061 | 376..17 | 1800 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:01:52 has no hits.
BS14455.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:25 Download gff for
BS14455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-PA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:09:41 Download gff for
BS14455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1188 | 7..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:33 Download gff for
BS14455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1188 | 7..383 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:33 Download gff for
BS14455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136692..16137065 | 11..383 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:09:41 Download gff for
BS14455.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129792..16130165 | 11..383 | 97 | <- | Minus |
BS14455.3prime Sequence
390 bp (390 high quality bases) assembled on 2006-10-13
> BS14455.3prime
ATGGTCTAGAAAGCTTCTAGCAGCAACAGAAACCGGAGGAGCTATTCTTC
GCGGGTTCGGGATCTTCGGATATTGTGTTTGCCGTCGGCTTTGCTGCACC
ATTGGACGTTGGCTGCACTTGAATGGGTGCAGCTGAGTTGATTTCTCCGA
TTTTGTAGTTCTTTAGATCCTTTTCTGCGTCGGAGGAATGGCCTGCCTGC
TTGAAGGCCTTGGTGGCATCCTTGCCGCCATATTCGAGTAGTGCTTCACT
GCCGCCAGGATGCTCGCCGAGGAACTTGGTTACATCGTACACGTTCCCCT
TGATGATCAGCCAGCAGGGTTTGCCATTCTTGCCGTTCTGCTGGGCCACC
TCCGAGAGTTCGTACAACTGTGACATGTCGACTGATAACT
BS14455.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 360 | CG5157-RA | 1..360 | 376..17 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1178 | 376..17 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136702..16137061 | 17..376 | 1800 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:18:26 has no hits.
BS14455.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:24 Download gff for
BS14455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-PA | 1..360 | 17..376 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:12 Download gff for
BS14455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1188 | 10..386 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:22 Download gff for
BS14455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1188 | 10..386 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:22 Download gff for
BS14455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136692..16137065 | 10..382 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:12 Download gff for
BS14455.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129792..16130165 | 10..382 | 97 | <- | Plus |
BS14455.complete Sequence
392 bp assembled on 2006-11-01
GenBank Submission: FJ637671
> BS14455.complete
GAAGTTATCAGTCGACATGTCACAGTTGTACGAACTCTCGGAGGTGGCCC
AGCAGAACGGCAAGAATGGCAAACCCTGCTGGCTGATCATCAAGGGGAAC
GTGTACGATGTAACCAAGTTCCTCGGCGAGCATCCTGGCGGCAGTGAAGC
ACTACTCGAATATGGCGGCAAGGATGCCACCAAGGCCTTCAAGCAGGCAG
GCCATTCCTCCGACGCAGAAAAGGATCTAAAGAACTACAAAATCGGAGAA
ATCAACTCAGCTGCACCCATTCAAGTGCAGCCAACGTCCAATGGTGCAGC
AAAGCCGACGGCAAACACAATATCCGAAGATCCCGAACCCGCGAAGAATA
GCTCCTCCGGTTTCTGTTGCTGCTAGAAGCTTTCTAGACCAT
BS14455.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 360 | CG5157-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-RA | 1393 | CG5157-RA | 819..1178 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16136702..16137061 | 376..17 | 1800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:44:50 has no hits.
BS14455.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:22 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:34 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 810..1188 | 7..383 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:48 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 819..1178 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:22 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 1..360 | 17..376 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:12 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5157-RA | 819..1178 | 17..376 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:12 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16136702..16137061 | 17..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:48 Download gff for
BS14455.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16129802..16130161 | 17..376 | 100 | | Minus |
BS14455.pep Sequence
Translation from 16 to 375
> BS14455.pep
MSQLYELSEVAQQNGKNGKPCWLIIKGNVYDVTKFLGEHPGGSEALLEYG
GKDATKAFKQAGHSSDAEKDLKNYKIGEINSAAPIQVQPTSNGAAKPTAN
TISEDPEPAKNSSSGFCCC*
BS14455.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5157-PA | 119 | CG5157-PA | 1..119 | 1..119 | 633 | 100 | Plus |
Cyt-b5-PB | 134 | CG2140-PB | 6..110 | 2..112 | 216 | 42.3 | Plus |
CG3566-PD | 106 | CG3566-PD | 1..99 | 1..97 | 201 | 45.1 | Plus |
CG3566-PB | 117 | CG3566-PB | 1..89 | 1..91 | 192 | 45.1 | Plus |
CG3566-PC | 89 | CG3566-PC | 1..80 | 1..82 | 191 | 47.6 | Plus |