Clone Sequence Records
BS14457.3prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BS14457.3prime
ATGGTCTAGAAAGCTTTTAGTTATAGCCACGATAGGAACTCGAACCATAG
GAACGATCTCTCGAGATGGGCAGGCCCAAACGATCTGTATCATCGTAGTA
GCCATATCCACGATTCCGCTGACCCTGATAATCCCGCTGCCAATAGCCTG
AGTATTGCCTAAAACCTCCATTACCTCCGTAGCCACCATATCCGCCGTAT
CCGCCTCCTTGGCTACCCAGAATGTTCGTGGTCGGATAACTGCTAGTGGA
ATAATAGTTATAGCCTTGAGTTGGGTAGTAGCCGGAGGAACCGTAGCTCC
CCTGGTTTGGGTAGTAGGTGGTAGATCCATATCCCGAGCCGGGATAGTAT
CCCGATGAGCCGTAGTAGTTCGTATTGTAGCCGGGATAGTAGGGGTTGCT
CGGACGATTATAGTTGTAGCCATAGTTCGGATACCCAGAGCCAGTTCCAA
AGAGATTTAACAACTTGGCCGAAGTCTCGGCGGTTGCCAAATCACTTGTC
GTCGTCCTGGTCGCAGTTGCCACCTGATTTTCTGGGAGGGCGGCACTCCA
GGCTCCAGTCACGGCCAACATTAGGGTAAATAGCTTGATGAACATGACAC
TGGATTTAACCATGTCGACTGATAACT
BS14457.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 597 | CG13285-RA | 1..597 | 613..17 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..699 | 613..17 | 2985 | 100 | Minus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 613..174 | 2200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534825..5535270 | 17..462 | 2230 | 100 | Plus |
3L | 28110227 | 3L | 5535437..5535543 | 463..569 | 535 | 100 | Plus |
3L | 28110227 | 3L | 5535613..5535657 | 569..613 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:54:40 has no hits.
BS14457.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:27 Download gff for
BS14457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-PA | 1..597 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:27 Download gff for
BS14457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..613 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:13 Download gff for
BS14457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..613 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:13 Download gff for
BS14457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5534825..5535270 | 17..462 | 100 | <- | Plus |
3L | 5535437..5535542 | 463..568 | 100 | <- | Plus |
3L | 5535613..5535657 | 569..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:27 Download gff for
BS14457.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5528713..5528757 | 569..613 | 100 | | Plus |
arm_3L | 5527925..5528370 | 17..462 | 100 | <- | Plus |
arm_3L | 5528537..5528642 | 463..568 | 100 | <- | Plus |
BS14457.5prime Sequence
627 bp (627 high quality bases) assembled on 2006-10-13
> BS14457.5prime
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACTAAAAGCTTTCTAGACC
BS14457.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 597 | CG13285-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..699 | 17..613 | 2985 | 100 | Plus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534825..5535270 | 613..168 | 2230 | 100 | Minus |
3L | 28110227 | 3L | 5535437..5535543 | 167..61 | 535 | 100 | Minus |
3L | 28110227 | 3L | 5535613..5535657 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:27 has no hits.
BS14457.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:27 Download gff for
BS14457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-PA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:11 Download gff for
BS14457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:14 Download gff for
BS14457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..699 | 17..613 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:14 Download gff for
BS14457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5534825..5535270 | 168..613 | 100 | <- | Minus |
3L | 5535437..5535542 | 62..167 | 100 | <- | Minus |
3L | 5535613..5535657 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:11 Download gff for
BS14457.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5527925..5528370 | 168..613 | 100 | <- | Minus |
arm_3L | 5528537..5528642 | 62..167 | 100 | <- | Minus |
arm_3L | 5528713..5528757 | 17..61 | 100 | | Minus |
BS14457.complete Sequence
629 bp assembled on 2006-11-01
GenBank Submission: FJ637672
> BS14457.complete
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACTAAAAGCTTTCTAGACCAT
BS14457.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 597 | CG13285-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
CG13285-RB | 465 | CG13285-PB | 1..440 | 17..456 | 2200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-RA | 787 | CG13285-RA | 103..699 | 17..613 | 2985 | 100 | Plus |
CG13285-RB | 981 | CG13285-RB | 103..542 | 17..456 | 2200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5534825..5535270 | 613..168 | 2230 | 100 | Minus |
3L | 28110227 | 3L | 5535437..5535543 | 167..61 | 535 | 100 | Minus |
3L | 28110227 | 3L | 5535613..5535657 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:23:35 has no hits.
BS14457.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:53 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:50 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:30 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..697 | 17..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:53 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 1..597 | 17..613 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:56 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13285-RA | 103..697 | 17..611 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:56 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5534827..5535270 | 168..611 | 100 | <- | Minus |
3L | 5535437..5535542 | 62..167 | 100 | <- | Minus |
3L | 5535613..5535657 | 17..61 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:30 Download gff for
BS14457.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5527927..5528370 | 168..611 | 100 | <- | Minus |
arm_3L | 5528537..5528642 | 62..167 | 100 | <- | Minus |
arm_3L | 5528713..5528757 | 17..61 | 100 | | Minus |
BS14457.pep Sequence
Translation from 16 to 612
> BS14457.pep
MVKSSVMFIKLFTLMLAVTGAWSAALPENQVATATRTTTSDLATAETSAK
LLNLFGTGSGYPNYGYNYNRPSNPYYPGYNTNYYGSSGYYPGSGYGSTTY
YPNQGSYGSSGYYPTQGYNYYSTSSYPTTNILGSQGGGYGGYGGYGGNGG
FRQYSGYWQRDYQGQRNRGYGYYDDTDRLGLPISRDRSYGSSSYRGYN*
BS14457.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13285-PA | 198 | CG13285-PA | 1..198 | 1..198 | 1095 | 100 | Plus |
CG13285-PB | 154 | CG13285-PB | 1..147 | 1..147 | 805 | 100 | Plus |
Edg91-PB | 151 | CG7539-PB | 58..149 | 56..151 | 156 | 45.1 | Plus |
Edg91-PA | 159 | CG7539-PA | 66..157 | 56..151 | 156 | 45.1 | Plus |
CG13226-PA | 237 | CG13226-PA | 93..203 | 58..171 | 156 | 37.7 | Plus |