Clone BS14457 Report

Search the DGRC for BS14457

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG13285-RA
Protein status:BS14457.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14457.3prime Sequence

627 bp (627 high quality bases) assembled on 2006-10-13

> BS14457.3prime
ATGGTCTAGAAAGCTTTTAGTTATAGCCACGATAGGAACTCGAACCATAG
GAACGATCTCTCGAGATGGGCAGGCCCAAACGATCTGTATCATCGTAGTA
GCCATATCCACGATTCCGCTGACCCTGATAATCCCGCTGCCAATAGCCTG
AGTATTGCCTAAAACCTCCATTACCTCCGTAGCCACCATATCCGCCGTAT
CCGCCTCCTTGGCTACCCAGAATGTTCGTGGTCGGATAACTGCTAGTGGA
ATAATAGTTATAGCCTTGAGTTGGGTAGTAGCCGGAGGAACCGTAGCTCC
CCTGGTTTGGGTAGTAGGTGGTAGATCCATATCCCGAGCCGGGATAGTAT
CCCGATGAGCCGTAGTAGTTCGTATTGTAGCCGGGATAGTAGGGGTTGCT
CGGACGATTATAGTTGTAGCCATAGTTCGGATACCCAGAGCCAGTTCCAA
AGAGATTTAACAACTTGGCCGAAGTCTCGGCGGTTGCCAAATCACTTGTC
GTCGTCCTGGTCGCAGTTGCCACCTGATTTTCTGGGAGGGCGGCACTCCA
GGCTCCAGTCACGGCCAACATTAGGGTAAATAGCTTGATGAACATGACAC
TGGATTTAACCATGTCGACTGATAACT

BS14457.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 597 CG13285-RA 1..597 613..17 2985 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..699 613..17 2985 100 Minus
CG13285-RB 981 CG13285-RB 103..542 613..174 2200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534825..5535270 17..462 2230 100 Plus
3L 28110227 3L 5535437..5535543 463..569 535 100 Plus
3L 28110227 3L 5535613..5535657 569..613 225 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:54:40 has no hits.

BS14457.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:27 Download gff for BS14457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-PA 1..597 17..613 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:27 Download gff for BS14457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..613 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:13 Download gff for BS14457.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..613 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:13 Download gff for BS14457.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5534825..5535270 17..462 100 <- Plus
3L 5535437..5535542 463..568 100 <- Plus
3L 5535613..5535657 569..613 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:27 Download gff for BS14457.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5528713..5528757 569..613 100   Plus
arm_3L 5527925..5528370 17..462 100 <- Plus
arm_3L 5528537..5528642 463..568 100 <- Plus

BS14457.5prime Sequence

627 bp (627 high quality bases) assembled on 2006-10-13

> BS14457.5prime
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACTAAAAGCTTTCTAGACC

BS14457.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 597 CG13285-RA 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..699 17..613 2985 100 Plus
CG13285-RB 981 CG13285-RB 103..542 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534825..5535270 613..168 2230 100 Minus
3L 28110227 3L 5535437..5535543 167..61 535 100 Minus
3L 28110227 3L 5535613..5535657 61..17 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:08:27 has no hits.

BS14457.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:27 Download gff for BS14457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-PA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:11 Download gff for BS14457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:14 Download gff for BS14457.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..699 17..613 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:14 Download gff for BS14457.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5534825..5535270 168..613 100 <- Minus
3L 5535437..5535542 62..167 100 <- Minus
3L 5535613..5535657 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:11 Download gff for BS14457.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5527925..5528370 168..613 100 <- Minus
arm_3L 5528537..5528642 62..167 100 <- Minus
arm_3L 5528713..5528757 17..61 100   Minus

BS14457.complete Sequence

629 bp assembled on 2006-11-01

GenBank Submission: FJ637672

> BS14457.complete
GAAGTTATCAGTCGACATGGTTAAATCCAGTGTCATGTTCATCAAGCTAT
TTACCCTAATGTTGGCCGTGACTGGAGCCTGGAGTGCCGCCCTCCCAGAA
AATCAGGTGGCAACTGCGACCAGGACGACGACAAGTGATTTGGCAACCGC
CGAGACTTCGGCCAAGTTGTTAAATCTCTTTGGAACTGGCTCTGGGTATC
CGAACTATGGCTACAACTATAATCGTCCGAGCAACCCCTACTATCCCGGC
TACAATACGAACTACTACGGCTCATCGGGATACTATCCCGGCTCGGGATA
TGGATCTACCACCTACTACCCAAACCAGGGGAGCTACGGTTCCTCCGGCT
ACTACCCAACTCAAGGCTATAACTATTATTCCACTAGCAGTTATCCGACC
ACGAACATTCTGGGTAGCCAAGGAGGCGGATACGGCGGATATGGTGGCTA
CGGAGGTAATGGAGGTTTTAGGCAATACTCAGGCTATTGGCAGCGGGATT
ATCAGGGTCAGCGGAATCGTGGATATGGCTACTACGATGATACAGATCGT
TTGGGCCTGCCCATCTCGAGAGATCGTTCCTATGGTTCGAGTTCCTATCG
TGGCTATAACTAAAAGCTTTCTAGACCAT

BS14457.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 597 CG13285-PA 1..597 17..613 2985 100 Plus
CG13285-RB 465 CG13285-PB 1..440 17..456 2200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-RA 787 CG13285-RA 103..699 17..613 2985 100 Plus
CG13285-RB 981 CG13285-RB 103..542 17..456 2200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5534825..5535270 613..168 2230 100 Minus
3L 28110227 3L 5535437..5535543 167..61 535 100 Minus
3L 28110227 3L 5535613..5535657 61..17 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:23:35 has no hits.

BS14457.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:53 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:50 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:30 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..697 17..611 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:53 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 1..597 17..613 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:56 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
CG13285-RA 103..697 17..611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:56 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5534827..5535270 168..611 100 <- Minus
3L 5535437..5535542 62..167 100 <- Minus
3L 5535613..5535657 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:30 Download gff for BS14457.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5527927..5528370 168..611 100 <- Minus
arm_3L 5528537..5528642 62..167 100 <- Minus
arm_3L 5528713..5528757 17..61 100   Minus

BS14457.pep Sequence

Translation from 16 to 612

> BS14457.pep
MVKSSVMFIKLFTLMLAVTGAWSAALPENQVATATRTTTSDLATAETSAK
LLNLFGTGSGYPNYGYNYNRPSNPYYPGYNTNYYGSSGYYPGSGYGSTTY
YPNQGSYGSSGYYPTQGYNYYSTSSYPTTNILGSQGGGYGGYGGYGGNGG
FRQYSGYWQRDYQGQRNRGYGYYDDTDRLGLPISRDRSYGSSSYRGYN*

BS14457.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13285-PA 198 CG13285-PA 1..198 1..198 1095 100 Plus
CG13285-PB 154 CG13285-PB 1..147 1..147 805 100 Plus
Edg91-PB 151 CG7539-PB 58..149 56..151 156 45.1 Plus
Edg91-PA 159 CG7539-PA 66..157 56..151 156 45.1 Plus
CG13226-PA 237 CG13226-PA 93..203 58..171 156 37.7 Plus