Clone Sequence Records
BS14460.3prime Sequence
633 bp (633 high quality bases) assembled on 2006-10-13
> BS14460.3prime
ATGGTCTAGAAAGCTTCTATTTTAAGACTAAGGCAACTGGTTCAGATTTT
CTAAGGCTAATAGCATCGTTTAGGGACTTTGTATTGACATTTCCTCCTGA
AATTTGCAGAAGCTTTAGATTTTTGCATTTTGCAATGATTGGCAGAAGAT
TATTGGAAATATCCGTTGGGCAGAATATCGAGACGCATAGCTCCTCCAGA
TTGGCCAGACAACCCAGCATCTCCACACAGTCAGTCGTTGAGTAGAAGCC
CTTGAAATGCCGTAAGCTCTGGATGCGAACCAACTGGCAGGTCTCCTGCA
TAGTAAGACTCCCTCCGTCGATGGACAGATGTGTCAACTGAGATTTGGCA
GCTAGAGCTGAGAGAAGTGGTTCAAAGGAGCCGCTTCTGCGAATGCCAAA
GTAGGATAGTTCCCCCAGCTTCGGCAGCCTAGCCAGCTGCACGTATTCTG
AAGAATTCGCGGGCATGCCAAACTTGAGCACCTTCAAGTTCTTGCAATGC
GGCACTATGTGGCTCAAATTCTTCTGTATGCAGGCATAGCCCAAATGAAG
ACTGCGAAGATTGCCACTGGACCTGCAACATTTCACCAGAGCTGCGAGTG
AAATTTTTGGGACGAGCATGTCGACTGATAACT
BS14460.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PA | 603 | CG12520-RA | 1..603 | 619..17 | 3015 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1280 | 619..16 | 3020 | 100 | Minus |
CG12520-RC | 1427 | CG12520-RC | 697..1300 | 619..16 | 3020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901374..12901977 | 16..619 | 3020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:41:29 has no hits.
BS14460.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:29 Download gff for
BS14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-PA | 1..603 | 17..619 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:00 Download gff for
BS14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 11..619 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:03 Download gff for
BS14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 11..619 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:03 Download gff for
BS14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901372..12901977 | 11..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:00 Download gff for
BS14460.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894472..12895077 | 11..619 | 99 | | Plus |
BS14460.5prime Sequence
633 bp (633 high quality bases) assembled on 2006-10-13
> BS14460.5prime
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAATAGAAGCTTTCTAGACC
BS14460.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PA | 603 | CG12520-RA | 1..603 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1280 | 17..620 | 3020 | 100 | Plus |
CG12520-RC | 1427 | CG12520-RC | 697..1300 | 17..620 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901374..12901977 | 620..17 | 3020 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:06 has no hits.
BS14460.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:29 Download gff for
BS14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-PA | 1..603 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:42 Download gff for
BS14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 17..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:38 Download gff for
BS14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1302 | 17..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:38 Download gff for
BS14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901372..12901977 | 17..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:42 Download gff for
BS14460.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894472..12895077 | 17..625 | 99 | | Minus |
BS14460.complete Sequence
635 bp assembled on 2006-11-01
> BS14460.complete
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAATAGAAGCTTTCTAGACCAT
BS14460.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1116 | CG12520-PB | 514..1116 | 17..619 | 3015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-RB | 1407 | CG12520-RB | 677..1280 | 17..620 | 3020 | 100 | Plus |
CG12520-RC | 1427 | CG12520-RC | 697..1300 | 17..620 | 3020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12901374..12901977 | 620..17 | 3020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:04:30 has no hits.
BS14460.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:10 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:01 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:17 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1292 | 17..612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:10 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RB | 514..1116 | 17..619 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:54 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12520-RC | 697..1292 | 17..612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:54 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12901382..12901977 | 17..612 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:17 Download gff for
BS14460.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12894482..12895077 | 17..612 | 100 | | Minus |
BS14460.pep Sequence
Translation from 16 to 618
> BS14460.pep
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
*
BS14460.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12520-PB | 371 | CG12520-PB | 172..371 | 1..200 | 1021 | 100 | Plus |