Clone BS14460 Report

Search the DGRC for BS14460

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:60
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS14460.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS14460.3prime Sequence

633 bp (633 high quality bases) assembled on 2006-10-13

> BS14460.3prime
ATGGTCTAGAAAGCTTCTATTTTAAGACTAAGGCAACTGGTTCAGATTTT
CTAAGGCTAATAGCATCGTTTAGGGACTTTGTATTGACATTTCCTCCTGA
AATTTGCAGAAGCTTTAGATTTTTGCATTTTGCAATGATTGGCAGAAGAT
TATTGGAAATATCCGTTGGGCAGAATATCGAGACGCATAGCTCCTCCAGA
TTGGCCAGACAACCCAGCATCTCCACACAGTCAGTCGTTGAGTAGAAGCC
CTTGAAATGCCGTAAGCTCTGGATGCGAACCAACTGGCAGGTCTCCTGCA
TAGTAAGACTCCCTCCGTCGATGGACAGATGTGTCAACTGAGATTTGGCA
GCTAGAGCTGAGAGAAGTGGTTCAAAGGAGCCGCTTCTGCGAATGCCAAA
GTAGGATAGTTCCCCCAGCTTCGGCAGCCTAGCCAGCTGCACGTATTCTG
AAGAATTCGCGGGCATGCCAAACTTGAGCACCTTCAAGTTCTTGCAATGC
GGCACTATGTGGCTCAAATTCTTCTGTATGCAGGCATAGCCCAAATGAAG
ACTGCGAAGATTGCCACTGGACCTGCAACATTTCACCAGAGCTGCGAGTG
AAATTTTTGGGACGAGCATGTCGACTGATAACT

BS14460.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PA 603 CG12520-RA 1..603 619..17 3015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1280 619..16 3020 100 Minus
CG12520-RC 1427 CG12520-RC 697..1300 619..16 3020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901374..12901977 16..619 3020 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:41:29 has no hits.

BS14460.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:29 Download gff for BS14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-PA 1..603 17..619 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:00 Download gff for BS14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 11..619 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:03 Download gff for BS14460.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 11..619 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:03 Download gff for BS14460.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12901372..12901977 11..619 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:00 Download gff for BS14460.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894472..12895077 11..619 99   Plus

BS14460.5prime Sequence

633 bp (633 high quality bases) assembled on 2006-10-13

> BS14460.5prime
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAATAGAAGCTTTCTAGACC

BS14460.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PA 603 CG12520-RA 1..603 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1280 17..620 3020 100 Plus
CG12520-RC 1427 CG12520-RC 697..1300 17..620 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901374..12901977 620..17 3020 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:06 has no hits.

BS14460.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:29 Download gff for BS14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-PA 1..603 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:42 Download gff for BS14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 17..625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:38 Download gff for BS14460.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1302 17..625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:38 Download gff for BS14460.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12901372..12901977 17..625 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:42 Download gff for BS14460.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894472..12895077 17..625 99   Minus

BS14460.complete Sequence

635 bp assembled on 2006-11-01

> BS14460.complete
GAAGTTATCAGTCGACATGCTCGTCCCAAAAATTTCACTCGCAGCTCTGG
TGAAATGTTGCAGGTCCAGTGGCAATCTTCGCAGTCTTCATTTGGGCTAT
GCCTGCATACAGAAGAATTTGAGCCACATAGTGCCGCATTGCAAGAACTT
GAAGGTGCTCAAGTTTGGCATGCCCGCGAATTCTTCAGAATACGTGCAGC
TGGCTAGGCTGCCGAAGCTGGGGGAACTATCCTACTTTGGCATTCGCAGA
AGCGGCTCCTTTGAACCACTTCTCTCAGCTCTAGCTGCCAAATCTCAGTT
GACACATCTGTCCATCGACGGAGGGAGTCTTACTATGCAGGAGACCTGCC
AGTTGGTTCGCATCCAGAGCTTACGGCATTTCAAGGGCTTCTACTCAACG
ACTGACTGTGTGGAGATGCTGGGTTGTCTGGCCAATCTGGAGGAGCTATG
CGTCTCGATATTCTGCCCAACGGATATTTCCAATAATCTTCTGCCAATCA
TTGCAAAATGCAAAAATCTAAAGCTTCTGCAAATTTCAGGAGGAAATGTC
AATACAAAGTCCCTAAACGATGCTATTAGCCTTAGAAAATCTGAACCAGT
TGCCTTAGTCTTAAAATAGAAGCTTTCTAGACCAT

BS14460.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1116 CG12520-PB 514..1116 17..619 3015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-RB 1407 CG12520-RB 677..1280 17..620 3020 100 Plus
CG12520-RC 1427 CG12520-RC 697..1300 17..620 3020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12901374..12901977 620..17 3020 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:04:30 has no hits.

BS14460.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:23:10 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:01 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..619 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:17 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1292 17..612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:23:10 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RB 514..1116 17..619 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:54 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
CG12520-RC 697..1292 17..612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:54 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12901382..12901977 17..612 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:17 Download gff for BS14460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12894482..12895077 17..612 100   Minus

BS14460.pep Sequence

Translation from 16 to 618

> BS14460.pep
MLVPKISLAALVKCCRSSGNLRSLHLGYACIQKNLSHIVPHCKNLKVLKF
GMPANSSEYVQLARLPKLGELSYFGIRRSGSFEPLLSALAAKSQLTHLSI
DGGSLTMQETCQLVRIQSLRHFKGFYSTTDCVEMLGCLANLEELCVSIFC
PTDISNNLLPIIAKCKNLKLLQISGGNVNTKSLNDAISLRKSEPVALVLK
*

BS14460.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12520-PB 371 CG12520-PB 172..371 1..200 1021 100 Plus