Clone Sequence Records
BS14463.3prime Sequence
582 bp (582 high quality bases) assembled on 2006-10-13
> BS14463.3prime
ATGGTCTAGAAAGCTTCTACGATTCCGGGTAGCGTCGCACGCGTCGCTTT
TGCTCATTGGTCGTGGGTGTGCCCACACTGGCGGATTGCTGCTGCTCCTC
CTCATCCTCCTCCGGCAGCTGCTCGTTCCCTTCTAGCGGCAGCGGCAGCT
TACAGCCTGGCTTGCAGATAACAAAGTGCACCAGAGACACGATCACCTCG
AGAACTATTAGCGCGAACACGGCGTTCGTGATGATGCGTAGCCACAAACT
GCGTCCGGCAGCTGAGAGGCGAAGAAAGACCATGGCGGGCAGCAGGATGC
ATGGTGTCACGGTGAGCAGCATCCACATGGCGGTGGCGCCAGAGCACAGG
TTCACCGAGTAGCCGGCGTATAGGCGTACGGATTCAGCGGACACCGCCAA
AACGTAGGCCACCAGCATGGACAGGCCCTCCAGGTTCCACAAATGATGCA
GGCGTATGAGCATGTGGATCATGTAGCTCATGGCCCACACCATGGACACA
TACGTGTTGGCCTGCAGCAGCATTTGCAGCACCAGGTTGGCCCGATGCGG
CGTCACCGAGTACGCCATGTCGACTGATAACT
BS14463.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PA | 552 | CG15642-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..840 | 573..17 | 2770 | 99.8 | Minus |
CG15642-RA | 1261 | CG15642-RA | 56..612 | 573..17 | 2770 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466833..15467267 | 17..451 | 2175 | 100 | Plus |
X | 23542271 | X | 15467353..15467474 | 452..573 | 595 | 99.2 | Plus |
Blast to na_te.dros performed 2015-02-03 06:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 150..43 | 115 | 58.6 | Minus |
BS14463.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:31 Download gff for
BS14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:47 Download gff for
BS14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..612 | 17..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:06 Download gff for
BS14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..612 | 17..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:06 Download gff for
BS14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466834..15467267 | 18..451 | 100 | <- | Plus |
X | 15467353..15467477 | 452..576 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:47 Download gff for
BS14463.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360867..15361300 | 18..451 | 100 | <- | Plus |
arm_X | 15361386..15361510 | 452..576 | 98 | | Plus |
BS14463.5prime Sequence
582 bp (582 high quality bases) assembled on 2006-10-13
> BS14463.5prime
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGTAGAAGCTTTCTAGACC
BS14463.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PA | 552 | CG15642-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..840 | 12..568 | 2770 | 99.8 | Plus |
CG15642-RA | 1261 | CG15642-RA | 56..612 | 12..568 | 2770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466833..15467267 | 568..134 | 2175 | 100 | Minus |
X | 23542271 | X | 15467353..15467474 | 133..12 | 595 | 99.2 | Minus |
Blast to na_te.dros performed 2015-01-31 10:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 435..542 | 115 | 58.6 | Plus |
BS14463.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:32 Download gff for
BS14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:03 Download gff for
BS14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..612 | 9..568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:36 Download gff for
BS14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 53..612 | 9..568 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:36 Download gff for
BS14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466833..15467267 | 134..568 | 100 | <- | Minus |
X | 15467353..15467477 | 9..133 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:03 Download gff for
BS14463.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360866..15361300 | 134..568 | 100 | <- | Minus |
arm_X | 15361386..15361510 | 9..133 | 98 | | Minus |
BS14463.complete Sequence
584 bp assembled on 2006-11-01
GenBank Submission: FJ637674
> BS14463.complete
GAAGTTATCAGTCGACATGGCGTACTCGGTGACGCCGCATCGGGCCAACC
TGGTGCTGCAAATGCTGCTGCAGGCCAACACGTATGTGTCCATGGTGTGG
GCCATGAGCTACATGATCCACATGCTCATACGCCTGCATCATTTGTGGAA
CCTGGAGGGCCTGTCCATGCTGGTGGCCTACGTTTTGGCGGTGTCCGCTG
AATCCGTACGCCTATACGCCGGCTACTCGGTGAACCTGTGCTCTGGCGCC
ACCGCCATGTGGATGCTGCTCACCGTGACACCATGCATCCTGCTGCCCGC
CATGGTCTTTCTTCGCCTCTCAGCTGCCGGACGCAGTTTGTGGCTACGCA
TCATCACGAACGCCGTGTTCGCGCTAATAGTTCTCGAGGTGATCGTGTCT
CTGGTGCACTTTGTTATCTGCAAGCCAGGCTGTAAGCTGCCGCTGCCGCT
AGAAGGGAACGAGCAGCTGCCGGAGGAGGATGAGGAGGAGCAGCAGCAAT
CCGCCAGTGTGGGCACACCCACGACCAATGAGCAAAAGCGACGCGTGCGA
CGCTACCCGGAATCGTAGAAGCTTTCTAGACCAT
BS14463.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 552 | CG15642-PB | 1..552 | 17..568 | 2760 | 100 | Plus |
CG15642-RA | 552 | CG15642-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-RB | 1489 | CG15642-RB | 284..840 | 12..568 | 2770 | 99.8 | Plus |
CG15642-RA | 1261 | CG15642-RA | 56..612 | 12..568 | 2770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15466833..15467267 | 568..134 | 2175 | 100 | Minus |
X | 23542271 | X | 15467353..15467474 | 133..12 | 595 | 99.2 | Minus |
Blast to na_te.dros performed 2014-11-27 01:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6887 | 435..542 | 115 | 58.6 | Plus |
BS14463.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:21:55 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:53:54 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:36 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 61..612 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:21:55 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:58 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15642-RA | 61..612 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:58 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15466833..15467267 | 134..568 | 100 | <- | Minus |
X | 15467353..15467469 | 17..133 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:36 Download gff for
BS14463.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15360866..15361300 | 134..568 | 100 | <- | Minus |
arm_X | 15361386..15361502 | 17..133 | 100 | | Minus |
BS14463.pep Sequence
Translation from 16 to 567
> BS14463.pep
MAYSVTPHRANLVLQMLLQANTYVSMVWAMSYMIHMLIRLHHLWNLEGLS
MLVAYVLAVSAESVRLYAGYSVNLCSGATAMWMLLTVTPCILLPAMVFLR
LSAAGRSLWLRIITNAVFALIVLEVIVSLVHFVICKPGCKLPLPLEGNEQ
LPEEDEEEQQQSASVGTPTTNEQKRRVRRYPES*
BS14463.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:35:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15642-PB | 183 | CG15642-PB | 1..183 | 1..183 | 935 | 100 | Plus |
CG15642-PA | 183 | CG15642-PA | 1..183 | 1..183 | 935 | 100 | Plus |