Clone BS14467 Report

Search the DGRC for BS14467

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG31526-RA
Protein status:BS14467.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14467.3prime Sequence

243 bp (243 high quality bases) assembled on 2006-10-13

> BS14467.3prime
ATGGTCTAGAAAGCTTTTAATTAAGGAGAAGTTTAGGCAAAATAACTACG
ATCGTGGCCCGAAAGAGCCACAGGCATTTTGCATTAGCAATTTGCAATTT
GCAAAACAATTTCCAAACAGAAAAAGGAGACAGCTCCTCCTCGCACCACA
AACGTGCACCGTACTGTGTGCACGGGGATGCAGCAAACAGGAAATGGAAT
ACCGTGCCAAAGGCTAAGGGAAGATGCATGTCGACTGATAACT

BS14467.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-PA 213 CG31526-RA 1..213 229..17 1065 100 Minus
CG31526-PB 213 CG31526-RB 1..213 229..17 1065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-RC 620 CG31526-RC 230..446 233..17 1070 99.5 Minus
CG31526-RA 632 CG31526-RA 242..458 233..17 1070 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4533550..4533766 233..17 1070 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 17:44:20 has no hits.

BS14467.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:35 Download gff for BS14467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-PB 1..213 17..229 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:22 Download gff for BS14467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 240..462 12..238 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:01:09 Download gff for BS14467.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 240..462 12..238 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:01:09 Download gff for BS14467.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4533548..4533768 16..238 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:22 Download gff for BS14467.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 359270..359490 16..238 97 <- Minus

BS14467.5prime Sequence

243 bp (243 high quality bases) assembled on 2006-10-13

> BS14467.5prime
GAAGTTATCAGTCGACATGCATCTTCCCTTAGCCTTTGGCACGGTATTCC
ATTTCCTGTTTGCTGCATCCCCGTGCACACAGTACGGTGCACGTTTGTGG
TGCGAGGAGGAGCTGTCTCCTTTTTCTGTTTGGAAATTGTTTTGCAAATT
GCAAATTGCTAATGCAAAATGCCTGTGGCTCTTTCGGGCCACGATCGTAG
TTATTTTGCCTAAACTTCTCCTTAATTAAAAGCTTTCTAGACC

BS14467.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-PA 213 CG31526-RA 1..213 17..229 1065 100 Plus
CG31526-PB 213 CG31526-RB 1..213 17..229 1065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-RC 620 CG31526-RC 230..446 13..229 1070 99.5 Plus
CG31526-RA 632 CG31526-RA 242..458 13..229 1070 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4533550..4533766 13..229 1070 99.5 Plus
Blast to na_te.dros performed on 2015-02-11 09:08:46 has no hits.

BS14467.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:35 Download gff for BS14467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-PB 1..213 17..229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:24 Download gff for BS14467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 240..462 8..234 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:57:28 Download gff for BS14467.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 240..462 8..234 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:28 Download gff for BS14467.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4533548..4533770 8..234 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:24 Download gff for BS14467.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 359270..359492 8..234 97   Plus

BS14467.complete Sequence

245 bp assembled on 2006-11-01

GenBank Submission: FJ637676

> BS14467.complete
GAAGTTATCAGTCGACATGCATCTTCCCTTAGCCTTTGGCACGGTATTCC
ATTTCCTGTTTGCTGCATCCCCGTGCACACAGTACGGTGCACGTTTGTGG
TGCGAGGAGGAGCTGTCTCCTTTTTCTGTTTGGAAATTGTTTTGCAAATT
GCAAATTGCTAATGCAAAATGCCTGTGGCTCTTTCGGGCCACGATCGTAG
TTATTTTGCCTAAACTTCTCCTTAATTAAAAGCTTTCTAGACCAT

BS14467.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-RC 213 CG31526-PC 1..213 17..229 1065 100 Plus
CG31526-RA 213 CG31526-PA 1..213 17..229 1065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-RC 620 CG31526-RC 230..446 13..229 1070 99.5 Plus
CG31526-RA 632 CG31526-RA 242..458 13..229 1070 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4533550..4533766 13..229 1070 99.5 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:53 has no hits.

BS14467.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:53:55 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31526-RB 1..213 17..229 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:12:41 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 260..482 8..234 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:09:01 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 246..456 17..227 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:53:55 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 260..482 8..234 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:54 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
CG31526-RA 246..456 17..227 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:54 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4533554..4533764 17..227 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:09:01 Download gff for BS14467.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 359276..359486 17..227 100   Plus

BS14467.pep Sequence

Translation from 16 to 228

> BS14467.pep
MHLPLAFGTVFHFLFAASPCTQYGARLWCEEELSPFSVWKLFCKLQIANA
KCLWLFRATIVVILPKLLLN*

BS14467.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG31526-PC 70 CG31526-PC 1..70 1..70 381 100 Plus
CG31526-PA 70 CG31526-PA 1..70 1..70 381 100 Plus