Clone Sequence Records
BS14469.3prime Sequence
606 bp (599 high quality bases) assembled on 2006-10-13
> BS14469.3prime
ATGGTCTAGAAAGCTTTTACAGGATTCGCCCAAAATATCGCACATTCTTT
TTATCCAAATAGCGCGTGGCCAACGCCGGCCAGTGGACCACAAAGAGGTC
CGCCAGCGGAAGGAGCAGGCGTCCGCTCAGCGACAGCGTCTCCACGCGGC
AGAAGCTCTCCACGAACACTATTCTGGAGTGCGAGGGCAGGCGTCCGAGG
AGGCGCCACAGATAGGCGGCATAGCAGAAGGGCACACAGGTGCCGGGTCC
ATTGCAGAGGATCAGTTGGGGGCGATCACGCCAGACCAGATAGCAGCTCC
AGAGAAGCGCCCACAGGCTGGTGAAGATGCTGCTTAGCCAGGATTGGCCC
ACGTCGCGGCTGCGCGGCACCTTCACGAATTCCGCCCTCTGGGCAGCCTG
CGGCAGGACCTGCCTGAACTGGCGCTCGGAGGTAGAGTCACTGTTGGCCA
GGATCAGTCTAATTGGCTGGTACTTCTCCGTCTGTTCGATGTCTGTCTGT
TGCAGCAGCGCCTGGGTCAGCCGGCACATCTCCGCCGTGTGGCCGCCAGA
GCCCAGTATTACGTAGGTGGGGTGAGGCGAGCTGGTCGTCATGTCAACTG
ATAACT
BS14469.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-PA | 576 | CG6308-RA | 1..576 | 592..17 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-RA | 696 | CG6308-RA | 80..655 | 592..17 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:57:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15472243..15472818 | 592..17 | 2880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:57:39 has no hits.
BS14469.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:37 Download gff for
BS14469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-PA | 1..576 | 17..592 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:41 Download gff for
BS14469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..665 | 7..592 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:35 Download gff for
BS14469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..665 | 7..592 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:35 Download gff for
BS14469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15472243..15472828 | 7..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:41 Download gff for
BS14469.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15366276..15366861 | 7..592 | 99 | | Minus |
BS14469.5prime Sequence
606 bp (606 high quality bases) assembled on 2006-10-13
> BS14469.5prime
GAAGTTATCAGTCGACATGACGACCAGCTCGCCTCACCCCACCTACGTAA
TACTGGGCTCTGGCGGCCACACGGCGGAGATGTGCCGGCTGACCCAGGCG
CTGCTGCAACAGACAGACATCGAACAGACGGAGAAGTACCAGCCAATTAG
ACTGATCCTGGCCAACAGTGACTCTACCTCCGAGCGCCAGTTCAGGCAGG
TCCTGCCGCAGGCTGCCCAGAGGGCGGAATTCGTGAAGGTGCCGCGCAGC
CGCGACGTGGGCCAATCCTGGCTAAGCAGCATCTTCACCAGCCTGTGGGC
GCTTCTCTGGAGCTGCTATCTGGTCTGGCGTGATCGCCCCCAACTGATCC
TCTGCAATGGACCCGGCACCTGTGTGCCCTTCTGCTATGCCGCCTATCTG
TGGCGCCTCCTCGGACGCCTGCCCTCGCACTCCAGAATAGTGTTCGTGGA
GAGCTTCTGCCGCGTGGAGACGCTGTCGCTGAGCGGACGCCTGCTCCTTC
CGCTGGCGGACCTCTTTGTGGTCCACTGGCCGGCGTTGGCCACGCGCTAT
TTGGATAAAAAGAATGTGCGATATTTTGGGCGAATCCTGTAAAAGCTTTC
TAGACC
BS14469.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-PA | 576 | CG6308-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-RA | 696 | CG6308-RA | 80..655 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15472243..15472818 | 17..592 | 2880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:53:20 has no hits.
BS14469.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:37 Download gff for
BS14469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-PA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:28 Download gff for
BS14469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..665 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:29 Download gff for
BS14469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..665 | 17..602 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:29 Download gff for
BS14469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15472243..15472828 | 17..602 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:28 Download gff for
BS14469.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15366276..15366861 | 17..602 | 99 | | Plus |
BS14469.complete Sequence
608 bp assembled on 2006-11-01
> BS14469.complete
GAAGTTATCAGTCGACATGACGACCAGCTCGCCTCACCCCACCTACGTAA
TACTGGGCTCTGGCGGCCACACGGCGGAGATGTGCCGGCTGACCCAGGCG
CTGCTGCAACAGACAGACATCGAACAGACGGAGAAGTACCAGCCAATTAG
ACTGATCCTGGCCAACAGTGACTCTACCTCCGAGCGCCAGTTCAGGCAGG
TCCTGCCGCAGGCTGCCCAGAGGGCGGAATTCGTGAAGGTGCCGCGCAGC
CGCGACGTGGGCCAATCCTGGCTAAGCAGCATCTTCACCAGCCTGTGGGC
GCTTCTCTGGAGCTGCTATCTGGTCTGGCGTGATCGCCCCCAACTGATCC
TCTGCAATGGACCCGGCACCTGTGTGCCCTTCTGCTATGCCGCCTATCTG
TGGCGCCTCCTCGGACGCCTGCCCTCGCACTCCAGAATAGTGTTCGTGGA
GAGCTTCTGCCGCGTGGAGACGCTGTCGCTGAGCGGACGCCTGCTCCTTC
CGCTGGCGGACCTCTTTGTGGTCCACTGGCCGGCGTTGGCCACGCGCTAT
TTGGATAAAAAGAATGTGCGATATTTTGGGCGAATCCTGTAAAAGCTTTC
TAGACCAT
BS14469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-RA | 576 | CG6308-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-RA | 696 | CG6308-RA | 80..655 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15472243..15472818 | 17..592 | 2880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:34:06 has no hits.
BS14469.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:13 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:54:17 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:08 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..653 | 17..590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:13 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 1..576 | 17..592 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:01 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6308-RA | 80..653 | 17..590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:01 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15472243..15472816 | 17..590 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:08 Download gff for
BS14469.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15366276..15366849 | 17..590 | 100 | | Plus |
BS14469.pep Sequence
Translation from 16 to 591
> BS14469.pep
MTTSSPHPTYVILGSGGHTAEMCRLTQALLQQTDIEQTEKYQPIRLILAN
SDSTSERQFRQVLPQAAQRAEFVKVPRSRDVGQSWLSSIFTSLWALLWSC
YLVWRDRPQLILCNGPGTCVPFCYAAYLWRLLGRLPSHSRIVFVESFCRV
ETLSLSGRLLLPLADLFVVHWPALATRYLDKKNVRYFGRIL*
BS14469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6308-PA | 191 | CG6308-PA | 1..191 | 1..191 | 1011 | 100 | Plus |