Clone Sequence Records
BS14478.3prime Sequence
672 bp (672 high quality bases) assembled on 2006-10-13
> BS14478.3prime
ATGGTCTAGAAAGCTTTTAGGTGGACACGTGCATGGATTTCCATTTCCCA
TCCTTCTGAAGGCGGTACTGCACCCGGTCTGCGATTTGGTCGAGACCCAC
CTTCAGGAAGTCCCAACGCTGCGGTTGGAATTTCCAAGCGGTATAGCTTG
CTGGTCTCTCGATGGATTTTCCTCTGTGATCCAGAAGGAACTGATCGTGC
TTTGCCTTGAGATCATCGTAGTTAATCGGTTCTCCACAGGGACAGATGTG
ACCCCTGATTTGGGCAGCCAAATTCTCCTTCGCCCACAAAGCATCCATTT
CGCTTTGGTCAAGTTCCACGGCGGTGGCTCCAATCAATCTCACCTGCCAG
GCATTCTGATTTCCGGCCTTATCCTTAACATCTGGCATATAGAAGGTGAT
GCAGGCCTTGGGATTGGCCTGAAGGTTCTTGAAGTTGCGAACGTACCGAT
GGGTGATGTAGAACACACAGTTATCCTGGGTGAGTCCGCGGTACAGAACA
GTGCGGTTGAGCACACCGAATTCCTCGTCCACGGTGGCCAGGTTCATTTC
CTGTATGAATCCATCGGGATGTCCCTTGGCAGCTTCCTGAAGGATCTCCT
TAAAAAATTCAACGGGATCGGAGGGAAAGTCCTCGATTTTGGCCAAAGAG
GAGGTCATGTCGACTGATAACT
BS14478.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 642 | CG15343-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..777 | 658..17 | 3210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 144..658 | 2575 | 100 | Plus |
| X | 23542271 | X | 8272495..8272621 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:05 has no hits.
BS14478.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:41 Download gff for
BS14478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:59 Download gff for
BS14478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..777 | 17..666 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:19 Download gff for
BS14478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..777 | 17..666 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:19 Download gff for
BS14478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272495..8272621 | 17..143 | 100 | <- | Plus |
| X | 8272693..8273214 | 144..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:59 Download gff for
BS14478.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166528..8166654 | 17..143 | 100 | <- | Plus |
| arm_X | 8166726..8167247 | 144..666 | 99 | | Plus |
BS14478.5prime Sequence
672 bp (672 high quality bases) assembled on 2006-10-13
> BS14478.5prime
GAAGTTATCAGTCGACATGACCTCCTCTTTGGCCAAAATCGAGGACTTTC
CCTCCGATCCCGTTGAATTTTTTAAGGAGATCCTTCAGGAAGCTGCCAAG
GGACATCCCGATGGATTCATACAGGAAATGAACCTGGCCACCGTGGACGA
GGAATTCGGTGTGCTCAACCGCACTGTTCTGTACCGCGGACTCACCCAGG
ATAACTGTGTGTTCTACATCACCCATCGGTACGTTCGCAACTTCAAGAAC
CTTCAGGCCAATCCCAAGGCCTGCATCACCTTCTATATGCCAGATGTTAA
GGATAAGGCCGGAAATCAGAATGCCTGGCAGGTGAGATTGATTGGAGCCA
CCGCCGTGGAACTTGACCAAAGCGAAATGGATGCTTTGTGGGCGAAGGAG
AATTTGGCTGCCCAAATCAGGGGTCACATCTGTCCCTGTGGAGAACCGAT
TAACTACGATGATCTCAAGGCAAAGCACGATCAGTTCCTTCTGGATCACA
GAGGAAAATCCATCGAGAGACCAGCAAGCTATACCGCTTGGAAATTCCAA
CCGCAGCGTTGGGACTTCCTGAAGGTGGGTCTCGACCAAATCGCAGACCG
GGTGCAGTACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGT
CCACCTAAAAGCTTTCTAGACC
BS14478.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 642 | CG15343-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..777 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 531..17 | 2575 | 100 | Minus |
| X | 23542271 | X | 8272495..8272621 | 658..532 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:31 has no hits.
BS14478.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:42 Download gff for
BS14478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:31 Download gff for
BS14478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..777 | 9..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:55 Download gff for
BS14478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 129..777 | 9..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:55 Download gff for
BS14478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272495..8272621 | 532..658 | 100 | <- | Minus |
| X | 8272693..8273214 | 9..531 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:31 Download gff for
BS14478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166528..8166654 | 532..658 | 100 | <- | Minus |
| arm_X | 8166726..8167247 | 9..531 | 99 | | Minus |
BS14478.complete Sequence
674 bp assembled on 2006-11-01
GenBank Submission: FJ637677
> BS14478.complete
GAAGTTATCAGTCGACATGACCTCCTCTTTGGCCAAAATCGAGGACTTTC
CCTCCGATCCCGTTGAATTTTTTAAGGAGATCCTTCAGGAAGCTGCCAAG
GGACATCCCGATGGATTCATACAGGAAATGAACCTGGCCACCGTGGACGA
GGAATTCGGTGTGCTCAACCGCACTGTTCTGTACCGCGGACTCACCCAGG
ATAACTGTGTGTTCTACATCACCCATCGGTACGTTCGCAACTTCAAGAAC
CTTCAGGCCAATCCCAAGGCCTGCATCACCTTCTATATGCCAGATGTTAA
GGATAAGGCCGGAAATCAGAATGCCTGGCAGGTGAGATTGATTGGAGCCA
CCGCCGTGGAACTTGACCAAAGCGAAATGGATGCTTTGTGGGCGAAGGAG
AATTTGGCTGCCCAAATCAGGGGTCACATCTGTCCCTGTGGAGAACCGAT
TAACTACGATGATCTCAAGGCAAAGCACGATCAGTTCCTTCTGGATCACA
GAGGAAAATCCATCGAGAGACCAGCAAGCTATACCGCTTGGAAATTCCAA
CCGCAGCGTTGGGACTTCCTGAAGGTGGGTCTCGACCAAATCGCAGACCG
GGTGCAGTACCGCCTTCAGAAGGATGGGAAATGGAAATCCATGCACGTGT
CCACCTAAAAGCTTTCTAGACCAT
BS14478.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 642 | CG15343-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-RA | 948 | CG15343-RA | 136..777 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8272693..8273207 | 531..17 | 2575 | 100 | Minus |
| X | 23542271 | X | 8272495..8272621 | 658..532 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:41:02 has no hits.
BS14478.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:13 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:30 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:20 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 136..775 | 17..656 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:13 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:16 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15343-RA | 136..775 | 17..656 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:16 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8272497..8272621 | 532..656 | 100 | <- | Minus |
| X | 8272693..8273207 | 17..531 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:20 Download gff for
BS14478.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8166530..8166654 | 532..656 | 100 | <- | Minus |
| arm_X | 8166726..8167240 | 17..531 | 100 | | Minus |
BS14478.pep Sequence
Translation from 16 to 657
> BS14478.pep
MTSSLAKIEDFPSDPVEFFKEILQEAAKGHPDGFIQEMNLATVDEEFGVL
NRTVLYRGLTQDNCVFYITHRYVRNFKNLQANPKACITFYMPDVKDKAGN
QNAWQVRLIGATAVELDQSEMDALWAKENLAAQIRGHICPCGEPINYDDL
KAKHDQFLLDHRGKSIERPASYTAWKFQPQRWDFLKVGLDQIADRVQYRL
QKDGKWKSMHVST*
BS14478.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15343-PA | 213 | CG15343-PA | 1..213 | 1..213 | 1144 | 100 | Plus |
