Clone BS14479 Report

Search the DGRC for BS14479

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG7849-RB
Protein status:BS14479.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14479.3prime Sequence

797 bp (711 high quality bases) assembled on 2006-10-13

> BS14479.3prime
ATGGTCTAGAAAGCTTTTAATCTGTAGCTCGCAGTTCCACTCGCTGTTGT
CGCAGAAGCTGTGGATGCGCCCTCAGGATGTCACGTTGTTGACGGAGGTT
CTTGATAATTCCTGGCAAGTGCCAGGCGTGTCTGAGCAGACTATCTGTCA
CATCAAAATGGGCATGCCGCACGCAGCGTAGTTGGGAGCAGTGCGCCACG
GTTCGGAGGTCCAAAGCCATATCGTGCACTAGCGTAGCTAAGTACTCCTG
CGTCTCGTTGATGGCGTGCAGTTCCAGGGTGAAGTGCGGTCGATCGAAGT
GAATCAGCTTAATGCCGTAGACGACGGGCTGACTGTCGTCCGCTGGGCGT
AGGAGACCCCTACAGGCCAGTTCATAGGCCTCCTGGGTCTGCAAATCGAC
ACCGCAGAGCTCAAACATCTTACGCTGATGGGATGCCTGCATGGAGGCGG
CTAGACTGCTGATCCTGTCTGCGGACACGTGTCGGTGATTGGAGCGCATT
ATGACCCGTGAGTCTGGTAGGTTATTTTCGGTTGCGATGCCTAGGTGCCC
GATTAGATGGTAGACCCGCACTGGTCGATTTTTCCGAATAGAACTAGACT
GGCCTGCTCCCCTGTTGATCCCAAAGAGCAGGACTCCGCTGGTGTGATCG
CCCAGGCTGGACACTGTGGTGCAGATCAAGTCTCGCGGAAGGTACCGCGG
TCCGGTGGACAGAAGGTGGTCGGATAGATCCGTCTGCTCTCCTATGTTAT
GTAGTACGTGGTCTGCTGCAGTGCCTGTGCCCAGGAGGCTAATGTTC

BS14479.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 954 CG7849-RB 174..954 797..17 3880 99.8 Minus
CG7849-PA 741 CG7849-RA 131..741 627..17 3055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 240..1020 797..17 3890 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6078033 627..17 3055 100 Minus
2R 25286936 2R 6077204..6077373 797..628 835 99.4 Minus
Blast to na_te.dros performed on 2015-02-10 20:56:20 has no hits.

BS14479.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:42 Download gff for BS14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-PB 174..954 17..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:03 Download gff for BS14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 240..1023 10..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:47 Download gff for BS14479.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 240..1023 10..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:47 Download gff for BS14479.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6077204..6077373 628..797 99 -> Minus
2R 6077423..6078036 10..627 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:03 Download gff for BS14479.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964709..1964878 628..797 99 -> Minus
arm_2R 1964928..1965541 10..627 99   Minus

BS14479.5prime Sequence

873 bp (778 high quality bases) assembled on 2006-10-13

> BS14479.5prime
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCANGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCC

BS14479.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 954 CG7849-RB 1..857 17..873 4266 99.8 Plus
CG7849-PA 741 CG7849-RA 131..644 360..873 2551 99.8 Plus
CG7849-PA 741 CG7849-RA 1..130 17..146 650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 67..923 17..873 4274 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6077936 360..873 2559 99.8 Plus
2R 25286936 2R 6077160..6077373 146..359 1070 100 Plus
2R 25286936 2R 6076976..6077106 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:43:04 has no hits.

BS14479.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:43 Download gff for BS14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-PB 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:14 Download gff for BS14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 56..923 5..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:16 Download gff for BS14479.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 56..923 5..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:16 Download gff for BS14479.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6076965..6077105 5..146 96 -> Plus
2R 6077161..6077373 147..359 100 -> Plus
2R 6077423..6077936 360..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:14 Download gff for BS14479.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964470..1964610 5..146 96 -> Plus
arm_2R 1964666..1964878 147..359 100 -> Plus
arm_2R 1964928..1965441 360..873 99   Plus

BS14479.complete Sequence

986 bp assembled on 2006-11-01

GenBank Submission: FJ637678

> BS14479.complete
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCCAGGAATTATCAAGAACCTCCGTCAACA
ACGTGACATCCTGAGGGCGCATCCACAGCTTCTGCGACAACAGCGAGTGG
AACTGCGAGCTACAGATTAAAAGCTTTCTAGACCAT

BS14479.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 954 CG7849-PB 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-RB 1075 CG7849-RB 67..1020 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6077423..6078033 360..970 3055 100 Plus
2R 25286936 2R 6077160..6077373 146..359 1070 100 Plus
2R 25286936 2R 6076976..6077106 17..147 655 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:46:52 has no hits.

BS14479.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:43 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:53 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:57 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 67..1018 17..968 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:44 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:10 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
CG7849-RB 67..1018 17..968 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:10 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6076976..6077105 17..146 100 -> Plus
2R 6077161..6077373 147..359 100 -> Plus
2R 6077423..6078031 360..968 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:57 Download gff for BS14479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1964481..1964610 17..146 100 -> Plus
arm_2R 1964666..1964878 147..359 100 -> Plus
arm_2R 1964928..1965536 360..968 100   Plus

BS14479.pep Sequence

Translation from 16 to 969

> BS14479.pep
MALTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQ
RKPRKLQENISLLGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLIC
TTVSSLGDHTSGVLLFGINRGAGQSSSIRKNRPVRVYHLIGHLGIATENN
LPDSRVIMRSNHRHVSADRISSLAASMQASHQRKMFELCGVDLQTQEAYE
LACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVHD
MALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDILR
AHPQLLRQQRVELRATD*

BS14479.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7849-PB 317 CG7849-PB 1..317 1..317 1647 100 Plus