Clone Sequence Records
BS14479.3prime Sequence
797 bp (711 high quality bases) assembled on 2006-10-13
> BS14479.3prime
ATGGTCTAGAAAGCTTTTAATCTGTAGCTCGCAGTTCCACTCGCTGTTGT
CGCAGAAGCTGTGGATGCGCCCTCAGGATGTCACGTTGTTGACGGAGGTT
CTTGATAATTCCTGGCAAGTGCCAGGCGTGTCTGAGCAGACTATCTGTCA
CATCAAAATGGGCATGCCGCACGCAGCGTAGTTGGGAGCAGTGCGCCACG
GTTCGGAGGTCCAAAGCCATATCGTGCACTAGCGTAGCTAAGTACTCCTG
CGTCTCGTTGATGGCGTGCAGTTCCAGGGTGAAGTGCGGTCGATCGAAGT
GAATCAGCTTAATGCCGTAGACGACGGGCTGACTGTCGTCCGCTGGGCGT
AGGAGACCCCTACAGGCCAGTTCATAGGCCTCCTGGGTCTGCAAATCGAC
ACCGCAGAGCTCAAACATCTTACGCTGATGGGATGCCTGCATGGAGGCGG
CTAGACTGCTGATCCTGTCTGCGGACACGTGTCGGTGATTGGAGCGCATT
ATGACCCGTGAGTCTGGTAGGTTATTTTCGGTTGCGATGCCTAGGTGCCC
GATTAGATGGTAGACCCGCACTGGTCGATTTTTCCGAATAGAACTAGACT
GGCCTGCTCCCCTGTTGATCCCAAAGAGCAGGACTCCGCTGGTGTGATCG
CCCAGGCTGGACACTGTGGTGCAGATCAAGTCTCGCGGAAGGTACCGCGG
TCCGGTGGACAGAAGGTGGTCGGATAGATCCGTCTGCTCTCCTATGTTAT
GTAGTACGTGGTCTGCTGCAGTGCCTGTGCCCAGGAGGCTAATGTTC
BS14479.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 954 | CG7849-RB | 174..954 | 797..17 | 3880 | 99.8 | Minus |
CG7849-PA | 741 | CG7849-RA | 131..741 | 627..17 | 3055 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 240..1020 | 797..17 | 3890 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6078033 | 627..17 | 3055 | 100 | Minus |
2R | 25286936 | 2R | 6077204..6077373 | 797..628 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:56:20 has no hits.
BS14479.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:42 Download gff for
BS14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-PB | 174..954 | 17..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:03 Download gff for
BS14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 240..1023 | 10..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:47 Download gff for
BS14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 240..1023 | 10..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:47 Download gff for
BS14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6077204..6077373 | 628..797 | 99 | -> | Minus |
2R | 6077423..6078036 | 10..627 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:03 Download gff for
BS14479.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964709..1964878 | 628..797 | 99 | -> | Minus |
arm_2R | 1964928..1965541 | 10..627 | 99 | | Minus |
BS14479.5prime Sequence
873 bp (778 high quality bases) assembled on 2006-10-13
> BS14479.5prime
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCANGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCC
BS14479.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 954 | CG7849-RB | 1..857 | 17..873 | 4266 | 99.8 | Plus |
CG7849-PA | 741 | CG7849-RA | 131..644 | 360..873 | 2551 | 99.8 | Plus |
CG7849-PA | 741 | CG7849-RA | 1..130 | 17..146 | 650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 67..923 | 17..873 | 4274 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:42:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6077936 | 360..873 | 2559 | 99.8 | Plus |
2R | 25286936 | 2R | 6077160..6077373 | 146..359 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 6076976..6077106 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:43:04 has no hits.
BS14479.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:43 Download gff for
BS14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-PB | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:14 Download gff for
BS14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 56..923 | 5..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:16 Download gff for
BS14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 56..923 | 5..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:16 Download gff for
BS14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6076965..6077105 | 5..146 | 96 | -> | Plus |
2R | 6077161..6077373 | 147..359 | 100 | -> | Plus |
2R | 6077423..6077936 | 360..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:14 Download gff for
BS14479.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964470..1964610 | 5..146 | 96 | -> | Plus |
arm_2R | 1964666..1964878 | 147..359 | 100 | -> | Plus |
arm_2R | 1964928..1965441 | 360..873 | 99 | | Plus |
BS14479.complete Sequence
986 bp assembled on 2006-11-01
GenBank Submission: FJ637678
> BS14479.complete
GAAGTTATCAGTCGACATGGCTCTCACCAAAGTTTATGATGCCGCCACAG
TGTTTAAGCACATGAATGGCATTCTAAATGTGTACAAGCCATCCGGTATG
AAGGTGAAACACGTGCGCAATGCTATTCTGAGCAACATTTGCAAGGGACT
CAACGAAATGGAGCAGAGGAAACCACGCAAGTTGCAAGAGAACATTAGCC
TCCTGGGCACAGGCACTGCAGCAGATCACGTACTACATAACATAGGAGAG
CAGACGGATCTATCCGACCACCTTCTGTCCACCGGACCGCGGTACCTTCC
GCGAGACTTGATCTGCACCACAGTGTCCAGCCTGGGCGATCACACCAGCG
GAGTCCTGCTCTTTGGGATCAACAGGGGAGCAGGCCAGTCTAGTTCTATT
CGGAAAAATCGACCAGTGCGGGTCTACCATCTAATCGGGCACCTAGGCAT
CGCAACCGAAAATAACCTACCAGACTCACGGGTCATAATGCGCTCCAATC
ACCGACACGTGTCCGCAGACAGGATCAGCAGTCTAGCCGCCTCCATGCAG
GCATCCCATCAGCGTAAGATGTTTGAGCTCTGCGGTGTCGATTTGCAGAC
CCAGGAGGCCTATGAACTGGCCTGTAGGGGTCTCCTACGCCCAGCGGACG
ACAGTCAGCCCGTCGTCTACGGCATTAAGCTGATTCACTTCGATCGACCG
CACTTCACCCTGGAACTGCACGCCATCAACGAGACGCAGGAGTACTTAGC
TACGCTAGTGCACGATATGGCTTTGGACCTCCGAACCGTGGCGCACTGCT
CCCAACTACGCTGCGTGCGGCATGCCCATTTTGATGTGACAGATAGTCTG
CTCAGACACGCCTGGCACTTGCCAGGAATTATCAAGAACCTCCGTCAACA
ACGTGACATCCTGAGGGCGCATCCACAGCTTCTGCGACAACAGCGAGTGG
AACTGCGAGCTACAGATTAAAAGCTTTCTAGACCAT
BS14479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 954 | CG7849-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-RB | 1075 | CG7849-RB | 67..1020 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6077423..6078033 | 360..970 | 3055 | 100 | Plus |
2R | 25286936 | 2R | 6077160..6077373 | 146..359 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 6076976..6077106 | 17..147 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:52 has no hits.
BS14479.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:43 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:53 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:57 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 67..1018 | 17..968 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:44 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:10 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7849-RB | 67..1018 | 17..968 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:10 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6076976..6077105 | 17..146 | 100 | -> | Plus |
2R | 6077161..6077373 | 147..359 | 100 | -> | Plus |
2R | 6077423..6078031 | 360..968 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:57 Download gff for
BS14479.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1964481..1964610 | 17..146 | 100 | -> | Plus |
arm_2R | 1964666..1964878 | 147..359 | 100 | -> | Plus |
arm_2R | 1964928..1965536 | 360..968 | 100 | | Plus |
BS14479.pep Sequence
Translation from 16 to 969
> BS14479.pep
MALTKVYDAATVFKHMNGILNVYKPSGMKVKHVRNAILSNICKGLNEMEQ
RKPRKLQENISLLGTGTAADHVLHNIGEQTDLSDHLLSTGPRYLPRDLIC
TTVSSLGDHTSGVLLFGINRGAGQSSSIRKNRPVRVYHLIGHLGIATENN
LPDSRVIMRSNHRHVSADRISSLAASMQASHQRKMFELCGVDLQTQEAYE
LACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVHD
MALDLRTVAHCSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDILR
AHPQLLRQQRVELRATD*
BS14479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7849-PB | 317 | CG7849-PB | 1..317 | 1..317 | 1647 | 100 | Plus |