Clone Sequence Records
BS14481.3prime Sequence
763 bp (724 high quality bases) assembled on 2006-10-13
> BS14481.3prime
ATGGTCTAGAAAGCTTTTATACGAACTTCGCACTGCGAATGAATCCGTCG
CTGCTTGCTATGTATACCGTGTCGTTGGCTCCACAGCAAATGCTGTTCAC
ACAACTGCCCACCTCCACCTCGCCCAGGGCTTTTGGCTTTCCTGCTTCCA
GATCGGTCCATCCCTTAACCTTTTTGTCATAGCCGCCGGAGTACAAATAG
GTCTCATCTCCGCAAAGGGCGTTTATGATCAACTCATGGCAGTCCGGCAA
GTGCCAAATTTTGGAGTACTGTTGCTGCGAAAGATTGTTGACCAGTTGCA
AACCCATCCCAGAGCGATCGGGAAAGGCCAGATAGCTCCGCTTGCCATCC
ACCATGGGCCCGAGAAGATGGAGCGGAGACTTACCTGGAATCACCGCCTT
GTTGCTGTACTTTCCAGACTTGCCCTCCGCCACCTGAGACACCACCACGT
CCAGGTCGCGAACAGTGTAAATGAGATTCTGCTCGCCGGCCAGTGACTTG
ACCTCCTCCACCAGGCTGTACTTGAAGAGCATGCGATCGTTGGTCCAAGT
GGTCACCACACCCTTGTCATCGCCCGTGTAAAGCACGGATCCGTCGCAGT
ACATGGCCTGGATGGCGTCGTCGCAGCGGAATAGTTCCTGCACTGACTCG
TCTCCATAGGGAGGCAGCATGAAATGAACCTGGCCATCACAGCTGCTCGA
GTAGACCTTTCCGTGCTGATTAATGGCCATGCAGTATATGTACGCCTCGT
GAGCGTTTACAGT
BS14481.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 894 | CG14285-RA | 148..894 | 763..17 | 3710 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 169..915 | 763..17 | 3720 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025324..19025843 | 763..244 | 2585 | 99.8 | Minus |
3R | 32079331 | 3R | 19025901..19026129 | 245..17 | 1145 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:37 has no hits.
BS14481.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:44 Download gff for
BS14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-PA | 148..894 | 17..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:34 Download gff for
BS14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 153..902 | 10..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:06 Download gff for
BS14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 169..918 | 10..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:06 Download gff for
BS14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025324..19025842 | 245..763 | 99 | -> | Minus |
3R | 19025902..19026132 | 10..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:34 Download gff for
BS14481.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14851046..14851564 | 245..763 | 99 | -> | Minus |
arm_3R | 14851624..14851854 | 10..244 | 98 | | Minus |
BS14481.5prime Sequence
897 bp (780 high quality bases) assembled on 2006-10-13
> BS14481.5prime
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATGAGACCTATTTGTACTCCGGCGGCTATGA
CAAAAAGGTTAAGGGATGGACCGATCTGGAAGCAGGAAAGCCAAAAGCCC
TGAGCGAGGTGGAGGTGGGCAGTTGTGTGAACAGCATTTGCTGTGGAGCC
AACGACACGGTATACATAGCAAGCAGCGACGGATTCTTTCGCAGTGC
BS14481.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 894 | CG14285-RA | 1..881 | 17..897 | 4355 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 22..902 | 17..897 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:38:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025294..19025843 | 134..683 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 19025901..19026116 | 682..897 | 1050 | 99.1 | Plus |
3R | 32079331 | 3R | 19025120..19025236 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:38:56 has no hits.
BS14481.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:45 Download gff for
BS14481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:01 Download gff for
BS14481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..886 | 15..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:20 Download gff for
BS14481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 14..902 | 7..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:20 Download gff for
BS14481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025112..19025236 | 7..133 | 97 | -> | Plus |
3R | 19025294..19025842 | 134..682 | 100 | -> | Plus |
3R | 19025902..19026116 | 683..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:01 Download gff for
BS14481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14850834..14850958 | 7..133 | 97 | -> | Plus |
arm_3R | 14851016..14851564 | 134..682 | 100 | -> | Plus |
arm_3R | 14851624..14851838 | 683..897 | 99 | | Plus |
BS14481.complete Sequence
926 bp assembled on 2006-11-01
GenBank Submission: FJ637679
> BS14481.complete
GAAGTTATCAGTCGACATGGCCAACAACGCCCGCATCGAGCACACGTCCT
CCGAGGGTCATGAAGGGGACGCCACATGCGTGGCGTACTTCGATGGACAG
CTGTTCTCCGGAGGCGCTGACGGTAAAATACGAATCTGGTCACCGGAACT
GCAACTATTGGCCACTGTAAACGCTCACGAGGCGTACATATACTGCATGG
CCATTAATCAGCACGGAAAGGTCTACTCGAGCAGCTGTGATGGCCAGGTT
CACTTCATGCTGCCTCCCTATGGAGACGAGTCAGTGCAGGAACTATTCCG
CTGCGACGACGCCATCCAGGCCATGTACTGCGACGGATCCGTGCTTTACA
CGGGCGATGACAAGGGTGTGGTGACCACTTGGACCAACGATCGCATGCTC
TTCAAGTACAGCCTGGTGGAGGAGGTCAAGTCACTGGCCGGCGAGCAGAA
TCTCATTTACACTGTTCGCGACCTGGACGTGGTGGTGTCTCAGGTGGCGG
AGGGCAAGTCTGGAAAGTACAGCAACAAGGCGGTGATTCCAGGTAAGTCT
CCGCTCCATCTTCTCGGGCCCATGGTGGATGGCAAGCGGAGCTATCTGGC
CTTTCCCGATCGCTCTGGGATGGGTTTGCAACTGGTCAACAATCTTTCGC
AGCAACAGTACTCCAAAATTTGGCACTTGCCGGACTGCCATGAGTTGATC
ATAAACGCCCTTTGCGGAGATGAGACCTATTTGTACTCCGGCGGCTATGA
CAAAAAGGTTAAGGGATGGACCGATCTGGAAGCAGGAAAGCCAAAAGCCC
TGGGCGAGGTGGAGGTGGGCAGTTGTGTGAACAGCATTTGCTGTGGAGCC
AACGACACGGTATACATAGCAAGCAGCGACGGATTCATTCGCAGTGCGAA
GTTCGTATAAAAGCTTTCTAGACCAT
BS14481.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 894 | CG14285-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-RA | 989 | CG14285-RA | 22..915 | 17..910 | 4470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19025294..19025843 | 134..683 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 19025901..19026129 | 682..910 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 19025120..19025236 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:05:22 has no hits.
BS14481.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:45 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:55 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..902 | 15..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:54 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 6..897 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:45 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 1..902 | 15..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:11 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14285-RA | 22..913 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:11 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19025120..19025236 | 17..133 | 100 | -> | Plus |
3R | 19025294..19025842 | 134..682 | 100 | -> | Plus |
3R | 19025902..19026127 | 683..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:54 Download gff for
BS14481.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14850842..14850958 | 17..133 | 100 | -> | Plus |
arm_3R | 14851016..14851564 | 134..682 | 100 | -> | Plus |
arm_3R | 14851624..14851849 | 683..908 | 100 | | Plus |
BS14481.pep Sequence
Translation from 16 to 909
> BS14481.pep
MANNARIEHTSSEGHEGDATCVAYFDGQLFSGGADGKIRIWSPELQLLAT
VNAHEAYIYCMAINQHGKVYSSSCDGQVHFMLPPYGDESVQELFRCDDAI
QAMYCDGSVLYTGDDKGVVTTWTNDRMLFKYSLVEEVKSLAGEQNLIYTV
RDLDVVVSQVAEGKSGKYSNKAVIPGKSPLHLLGPMVDGKRSYLAFPDRS
GMGLQLVNNLSQQQYSKIWHLPDCHELIINALCGDETYLYSGGYDKKVKG
WTDLEAGKPKALGEVEVGSCVNSICCGANDTVYIASSDGFIRSAKFV*
BS14481.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14285-PA | 297 | CG14285-PA | 1..297 | 1..297 | 1584 | 100 | Plus |