Clone Sequence Records
BS14484.3prime Sequence
830 bp (751 high quality bases) assembled on 2006-10-13
> BS14484.3prime
ATGGTCTAGAAAGCTTCTAGGCCTCCTCATCCAGCCACTCCAGCCGGAAC
TCGCGCTCAAAGACCAGGCGATCGTACAGCCGCACCTCGCTAATCCTCGC
CGAGATGTCCAGCCGCAGTTCGCTGACCGCCAGGTGGAAATTCTGACGCA
CCGTTCGCTGTTTGTCCGGTGTCAATTGATTGAGAGGTTTGCGAAAGATG
CTGATGATGCGCTGCAGATGGTATTCCACGCTGGCACAGCGACCGATGCA
AACCCACAAGTTCTCCGGATCGTGAATGTTACCCGGGAAGCGGGTGCGTT
GATCGAAGGGCGCCTTGCCGGACAGCAGAGCTCTCACCTCGGCCACGATC
TCCTGGTGCGTCCTCAGATCGCGTGTGCTGAGGGTGGTGAACTCATACTT
GTCGCAAAAGTACATGAGCTCGGAGATGGCCACCCACGACTGGGAGCAGA
GTGTGGCATGGTGATTCGACCAGTTGGTGTAGCCAGCTGGACTGGAGGTC
TTGGTAGCCACGGCAGCGGTTGACGAGGAACTTGCATTGGGAGTCGGTGA
AGTGCTCGTTGGACTGCCTGTCTTGGGCTTGGGCGTATCCGAACCATTTA
TGATGGACCTTCTTTCTGTGCGCTGCAGCTGCTCCATTTCCCGCTCGTGC
TCCTTGGCCCTTAAATAGGCCTCCTTCTTCTGCTGCAACTCCTGAAGCTT
GGTCATCTTTGGTGGCGACAACGACTTTGTGAAGATCGAGGGCGGTGGCG
GCGCAAGAGCAGCCTGGTCGCCGTCTGTGTGTGCAATTGGTGTGCCGTTT
GTGTCCAGCGATGCACTGCGTCCGTACTTG
BS14484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 876 | CG13144-RA | 63..876 | 830..17 | 4045 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 153..966 | 830..17 | 4055 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490489..10491302 | 17..830 | 4055 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:24:17 has no hits.
BS14484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:46 Download gff for
BS14484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-PA | 63..876 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:51 Download gff for
BS14484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 128..947 | 11..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:26 Download gff for
BS14484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 153..972 | 11..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:26 Download gff for
BS14484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490483..10491302 | 11..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:51 Download gff for
BS14484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490483..10491302 | 11..830 | 99 | | Plus |
BS14484.5prime Sequence
903 bp (764 high quality bases) assembled on 2006-10-13
> BS14484.5prime
GAAGTTATCAGTCGACATGCAGAAGGCCATCAAGAAGGAGCTCAGCTTCT
CGCTGGACACGCTGGAGCGCTATAGGGCCAAGTACGGACGCAGTGCATCG
CTGGACACAAACGGCACACCAATTGCACACACAGACGGCGACCAGGCTGC
TCCTGCGCCGCCACCGCCCTCGATCTTCACAAAGTCGTTGTCGCCACCAA
AGATGACCAAGCTTCAGGAGTTGCAGCAGAAGAAGGAGGCCTATTTAAGG
GCCAAGGAGCACGAGCGGGAAATGGAGCAGCTGCAGCGCACAGAAAGAAG
GTCCATCATAAATGGTTCGGATACGCCCAAGCCCAAGACAGGCAGTCCAA
CGAGCACTTCACCGACTCCCAATGCAAGTTCCTCGTCAACCGCTGCCGTG
GCTACCAAGACCTCCAGTCCAGCTGGCTACACCAACTGGTCGAATCACCA
TGCCACACTCTGCTCCCAGTCGTGGGTGGCCATCTCCGAGCTCATGTACT
TTTGCGACAAGTATGAGTTCACCACCCTCAGCACACGCGATCTGAGGACG
CACCAGGAGATCGTGGCCGAGGTGAGAGCTCTGCTGTCCGGCAAGGCGCC
CTTCGATCAACGCACCCGCTTCCCGGGTAACATTCACGATCCGGAGAACT
TGTGGGTTTGCATCGGTCGCTGTGCCAGCGTGGAATACCATCTGCAGCGC
ATCATCAGCATCTTTCGCAAACCTCTCAATCAATTGACACCGGACAAACA
GCGAACGGTGCGTCAGAATTTCCACCTGGCGGTCAGCGAACTGCGGCTGG
ACATCTCGGCGAGGATTAGCGAGGTGCGGCTGTACGATCGCCTGGTCTTT
GAGCGCGAGTTCCGGCTGGAGTGGCTGGATGAGGAGGCCTAAAAGCTTTC
TAG
BS14484.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 876 | CG13144-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 90..965 | 16..891 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490490..10491365 | 891..16 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:08:58 has no hits.
BS14484.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:46 Download gff for
BS14484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:34 Download gff for
BS14484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 59..947 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:02 Download gff for
BS14484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 84..972 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:58:02 Download gff for
BS14484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490483..10491371 | 9..898 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:34 Download gff for
BS14484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490483..10491371 | 9..898 | 99 | | Minus |
BS14484.complete Sequence
908 bp assembled on 2006-11-01
GenBank Submission: FJ637681
> BS14484.complete
GAAGTTATCAGTCGACATGCAGAAGGCCATCAAGAAGGAGCTCAGCTTCT
CGCTGGACACGCTGGAGCGCTATAGGGCCAAGTACGGACGCAGTGCATCG
CTGGACACAAACGGCACACCAATTGCACACACAGACGGCGACCAGGCTGC
TCCTGCGCCGCCACCGCCCTCGATCTTCACAAAGTCGTTGTCGCCACCAA
AGATGACCAAGCTTCAGGAGTTGCAGCAGAAGAAGGAGGCCTATTTAAGG
GCCAAGGAGCACGAGCGGGAAATGGAGCAGCTGCAGCGCACAGAAAGAAG
GTCCATCATAAATGGTTCGGATACGCCCAAGCCCAAGACAGGCAGTCCAA
CGAGCACTTCACCGACTCCCAATGCAAGTTCCTCGTCAACCGCTGCCGTG
GCTACCAAGACCTCCAGTCCAGCTGGCTACACCAACTGGTCGAATCACCA
TGCCACACTCTGCTCCCAGTCGTGGGTGGCCATCTCCGAGCTCATGTACT
TTTGCGACAAGTATGAGTTCACCACCCTCAGCACACGCGATCTGAGGACG
CACCAGGAGATCGTGGCCGAGGTGAGAGCTCTGCTGTCCGGCAAGGCGCC
CTTCGATCAACGCACCCGCTTCCCGGGTAACATTCACGATCCGGAGAACT
TGTGGGTTTGCATCGGTCGCTGTGCCAGCGTGGAATACCATCTGCAGCGC
ATCATCAGCATCTTTCGCAAACCTCTCAATCAATTGACACCGGACAAACA
GCGAACGGTGCGTCAGAATTTCCACCTGGCGGTCAGCGAACTGCGGCTGG
ACATCTCGGCGAGGATTAGCGAGGTGCGGCTGTACGATCGCCTGGTCTTT
GAGCGCGAGTTCCGGCTGGAGTGGCTGGATGAGGAGGCCTAGAAGCTTTC
TAGACCAT
BS14484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 876 | CG13144-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-RA | 1555 | CG13144-RA | 90..966 | 16..892 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:26:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10490489..10491365 | 892..16 | 4385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:26:54 has no hits.
BS14484.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:47 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:58 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:26 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 66..941 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:47 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:24 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13144-RA | 91..966 | 17..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:24 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10490489..10491364 | 17..892 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:26 Download gff for
BS14484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10490489..10491364 | 17..892 | 100 | | Minus |
BS14484.pep Sequence
Translation from 16 to 891
> BS14484.pep
MQKAIKKELSFSLDTLERYRAKYGRSASLDTNGTPIAHTDGDQAAPAPPP
PSIFTKSLSPPKMTKLQELQQKKEAYLRAKEHEREMEQLQRTERRSIING
SDTPKPKTGSPTSTSPTPNASSSSTAAVATKTSSPAGYTNWSNHHATLCS
QSWVAISELMYFCDKYEFTTLSTRDLRTHQEIVAEVRALLSGKAPFDQRT
RFPGNIHDPENLWVCIGRCASVEYHLQRIISIFRKPLNQLTPDKQRTVRQ
NFHLAVSELRLDISARISEVRLYDRLVFEREFRLEWLDEEA*
BS14484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13144-PA | 291 | CG13144-PA | 1..291 | 1..291 | 1512 | 100 | Plus |
