Clone Sequence Records
BS14493.3prime Sequence
807 bp (694 high quality bases) assembled on 2006-10-13
> BS14493.3prime
ATGGTCTAGAAAGCTTTTACAACGAGTCAGTGGTGTCAACGATCCAGCTC
CTCAGGCTGGCGACATCGGCATAGACGCCGGGGTAGCCGGTCCAGGCACA
TCCGCTGCCCCAGGAAACCACGCCCACAAGCTTGTTGTCCGCGACCAAAG
GACCACCGGAGTCACCCTGGCAGGCGTCCTTCTTCTCGCCGGTGGCACAG
ACCATGGTCTCCAGAATCGAGTCGCTGCCGTAGTTGTACGTGTCGGCGGC
ACAGTCCTTGTAGTGCAGCAGATCAACCTCCACCTTCTGAAGGGTGTCGG
GGGAGGAGCAGAAAAGGAAGCAGGTGGTGCCCCAGCCGGAGACCACGGCA
TTGGTTCCGGAAACGGCCTCGGAGTCGGCCAGTTCGATGGCCCGGATCTT
AGAGGTCTGGCGAACGGGAGAGCTCAGCTTGATGATGGCCACATCGTTGA
TCATCAACTTGCTGTTGTAGCCCTCGTGGTACTTGAAGGCGCGGACGGTG
ACCACCTCACCACCGGAGCTCCTGGAAGTGGAACCCACTCGCACCTGCAG
CTCGCTGGCGGCGTAGGATTGCATGCAATGGGCGGCGGTCAGGACGGTCT
CCGAATCGATCAGACTTCCGCCACAGAAGTGGGAGCCCTTGGTCGTCTGG
ACGGACACCTGGTAGGGGTAGTTTTCGATATCCACGTCCTCGCCGTTCAC
AATCCGACCGAAAGGGAAGTCCAGTCCCGGATTTTCCTGGCAGGAAGCAG
CCAGGGCGACCAGCGCCACCACACTCAATAGCAAACGATTCATGTCGACT
GATAACT
BS14493.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-PA | 777 | CG17571-RA | 1..777 | 793..17 | 3810 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-RB | 1205 | CG17571-RB | 263..1040 | 793..16 | 3845 | 99.6 | Minus |
| CG17571-RA | 965 | CG17571-RA | 23..800 | 793..16 | 3845 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:20:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20256153..20256930 | 16..793 | 3845 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:20:16 has no hits.
BS14493.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:52 Download gff for
BS14493.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-PA | 1..777 | 17..793 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:34 Download gff for
BS14493.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 15..800 | 16..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:37 Download gff for
BS14493.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 15..800 | 16..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:37 Download gff for
BS14493.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20256153..20256938 | 16..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:34 Download gff for
BS14493.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20256153..20256938 | 16..801 | 99 | | Plus |
BS14493.5prime Sequence
807 bp (769 high quality bases) assembled on 2006-10-13
> BS14493.5prime
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGTTGTAAAAGCTTT
CTAGACC
BS14493.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-PA | 777 | CG17571-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-RB | 1205 | CG17571-RB | 263..1040 | 17..794 | 3890 | 100 | Plus |
| CG17571-RA | 965 | CG17571-RA | 23..800 | 17..794 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20256153..20256930 | 794..17 | 3890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:52 has no hits.
BS14493.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:53 Download gff for
BS14493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:31 Download gff for
BS14493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 15..800 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:53 Download gff for
BS14493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 15..800 | 9..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:53 Download gff for
BS14493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20256153..20256938 | 9..794 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:31 Download gff for
BS14493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20256153..20256938 | 9..794 | 99 | | Minus |
BS14493.complete Sequence
809 bp assembled on 2006-11-01
GenBank Submission: FJ637682
> BS14493.complete
GAAGTTATCAGTCGACATGAATCGTTTGCTATTGAGTGTGGTGGCGCTGG
TCGCCCTGGCTGCTTCCTGCCATGGAAATCCGGGACTGGACTTCCCCTTC
GGTCGGATTGTGAACGGCGAGGACGTGGATATCGAAAACTACCCCTACCA
GGTGTCCGTCCAGACGACCAAGGGCTCCCACTTCTGTGGCGGAAGTCTGA
TCGATTCGGAGACCGTCCTGACCGCCGCCCATTGCATGCAATCCTACGCC
GCCAGCGAGCTGCAGGTGCGAGTGGGTTCCACTTCCAGGAGCTCCGGTGG
TGAGGTGGTCACCGTCCGCGCCTTCAAGTACCACGAGGGCTACAACAGCA
AGTTGATGATCAACGATGTGGCCATCATCAAGCTGAGCTCTCCCGTTCGC
CAGACCTCTAAGATCCGGGCCATCGAACTGGCCGACTCCGAGGCCGTTTC
CGGAACCAATGCCGTGGTCTCCGGCTGGGGCACCACCTGCTTCCTTTTCT
GCTCCTCCCCCGACACCCTTCAGAAGGTGGAGGTTGATCTGCTGCACTAC
AAGGACTGTGCCGCCGACACGTACAACTACGGCAGCGACTCGATTCTGGA
GACCATGGTCTGTGCCACCGGCGAGAAGAAGGACGCCTGCCAGGGTGACT
CCGGTGGTCCTTTGGTCGCGGACAACAAGCTTGTGGGCGTGGTTTCCTGG
GGCAGCGGATGTGCCTGGACCGGCTACCCCGGCGTCTATGCCGATGTCGC
CAGCCTGAGGAGCTGGATCGTTGACACCACTGACTCGTTGTAAAAGCTTT
CTAGACCAT
BS14493.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-RB | 777 | CG17571-PB | 1..777 | 17..793 | 3885 | 100 | Plus |
| CG17571-RA | 777 | CG17571-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-RB | 1205 | CG17571-RB | 263..1040 | 17..794 | 3890 | 100 | Plus |
| CG17571-RA | 965 | CG17571-RA | 23..800 | 17..794 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20256153..20256930 | 794..17 | 3890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:15:49 has no hits.
BS14493.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:48 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:59 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 98..883 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:48 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 23..797 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:50 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 98..883 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:20 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17571-RA | 23..797 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:20 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20256156..20256930 | 17..791 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:48 Download gff for
BS14493.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20256156..20256930 | 17..791 | 100 | | Minus |
BS14493.pep Sequence
Translation from 16 to 792
> BS14493.pep
MNRLLLSVVALVALAASCHGNPGLDFPFGRIVNGEDVDIENYPYQVSVQT
TKGSHFCGGSLIDSETVLTAAHCMQSYAASELQVRVGSTSRSSGGEVVTV
RAFKYHEGYNSKLMINDVAIIKLSSPVRQTSKIRAIELADSEAVSGTNAV
VSGWGTTCFLFCSSPDTLQKVEVDLLHYKDCAADTYNYGSDSILETMVCA
TGEKKDACQGDSGGPLVADNKLVGVVSWGSGCAWTGYPGVYADVASLRSW
IVDTTDSL*
BS14493.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17571-PB | 258 | CG17571-PB | 1..258 | 1..258 | 1345 | 100 | Plus |
| CG17571-PA | 258 | CG17571-PA | 1..258 | 1..258 | 1345 | 100 | Plus |
| thetaTry-PA | 262 | CG12385-PA | 1..262 | 1..258 | 666 | 51.9 | Plus |
| alphaTry-PA | 256 | CG18444-PA | 1..256 | 4..258 | 644 | 51.3 | Plus |
| CG30025-PA | 253 | CG30025-PA | 1..251 | 4..253 | 634 | 50.8 | Plus |
