Clone BS14494 Report

Search the DGRC for BS14494

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:144
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG17855-RA
Protein status:BS14494.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14494.3prime Sequence

781 bp (780 high quality bases) assembled on 2006-10-13

> BS14494.3prime
ATGGTCTAGAAAGCTTCTAATCAACAGGCTCGCTTTCTTTCTCCAACTTG
GCGCGAATTGTTCTTTGACAGCGGGATCTCAACAATTCCCGTCTTAGGGC
ATTGCTCTCTGTTTCCACAGTTTGTATGAGGCTATGGGTTAAAGCAGCTC
TTTCCATAGTTTCTGCGTCGGCATCATCATCCTTGGGGTCAGATTCACTG
CTAGAGGAGCAGCGCCGGGCCTGCATAGCTTTATGATGCTGTCCGGGATA
GTCTTCCTCATATTTGGGCGGTGGGTCGTCATCGTTGGGTAGCGAGGCCG
GCAGACTGGTCGCTCCTTCTTCTGATTTTGCCTTAAAAGCGGCTAATTCG
TCCCGCAAGGATTGGTTTTGCATTTCCAGTAATTCCACGCTCTCAAGTTC
AAAATCCATTTCGTCAATAATGTCGTATGACTCATCAAGGGCTCTTTGAA
GTTTTTCTACTTTGGCCTTCAGCTCGTTCAATTCGTTGACATCGCTTTGG
GCCGACTGCCTTTTCTCCATAGCCATTCGTTGCTCTGCATTTCTTTGATC
TAAAGAGGACTTCATTACCAAGCCTGTAAGCGTCTTCTGCCGTTTAAACA
TCTCCTCCAAAGCACGACAACGTTTCACTTTCTCCAGATAAGCGTCATGC
AGTTTGTTGTACTTCTTCTTGTGCTTCTGCAGTGTTTCCACCAGACGATC
TCGTTCCTCCTCCAATTGGAAGACCATGATCTTGGCCTCCACATTTATGG
CCGCATTGGTGCTGTGGCTGGCAGATGCGCG

BS14494.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 879 CG17855-RA 115..879 781..17 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 236..1000 781..17 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9541318..9541575 388..131 1290 100 Minus
2L 23513712 2L 9540812..9541058 781..535 1235 100 Minus
2L 23513712 2L 9541116..9541265 536..387 750 100 Minus
2L 23513712 2L 9541634..9541747 130..17 570 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:43:38 has no hits.

BS14494.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:53 Download gff for BS14494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-PA 115..879 17..781 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:21 Download gff for BS14494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 236..1000 17..781 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:21 Download gff for BS14494.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 236..1000 17..781 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:21 Download gff for BS14494.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9540812..9541058 535..781 100 -> Minus
2L 9541118..9541263 389..534 100 -> Minus
2L 9541318..9541575 131..388 100 -> Minus
2L 9541634..9541747 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:21 Download gff for BS14494.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9540812..9541058 535..781 100 -> Minus
arm_2L 9541118..9541263 389..534 100 -> Minus
arm_2L 9541318..9541575 131..388 100 -> Minus
arm_2L 9541634..9541747 17..130 100   Minus

BS14494.5prime Sequence

893 bp (795 high quality bases) assembled on 2006-10-13

> BS14494.5prime
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAAAAGAAAGCGAGCCTGTTGATTA

BS14494.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 879 CG17855-RA 1..854 17..870 4270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 122..999 17..893 4365 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9540748..9541058 67..377 1540 99.7 Plus
2L 23513712 2L 9541318..9541575 524..781 1290 100 Plus
2L 23513712 2L 9541116..9541265 376..525 750 100 Plus
2L 23513712 2L 9541634..9541746 782..893 515 99.1 Plus
2L 23513712 2L 9540644..9540698 17..71 275 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:05:19 has no hits.

BS14494.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:54 Download gff for BS14494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-PA 1..877 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:23 Download gff for BS14494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..998 17..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:34 Download gff for BS14494.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..998 17..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:34 Download gff for BS14494.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9541118..9541263 378..523 100 -> Plus
2L 9541318..9541575 524..781 100 -> Plus
2L 9541634..9541745 782..892 99   Plus
2L 9540644..9540698 17..71 100 -> Plus
2L 9540753..9541058 72..377 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:23 Download gff for BS14494.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9540644..9540698 17..71 100 -> Plus
arm_2L 9540753..9541058 72..377 100 -> Plus
arm_2L 9541118..9541263 378..523 100 -> Plus
arm_2L 9541318..9541575 524..781 100 -> Plus
arm_2L 9541634..9541745 782..892 99   Plus

BS14494.complete Sequence

911 bp assembled on 2006-11-01

GenBank Submission: FJ637683

> BS14494.complete
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAGAAAGAAAGCGAGCCTGTTGATTAGAAGCT
TTCTAGACCAT

BS14494.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 879 CG17855-PA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-RA 1733 CG17855-RA 122..1000 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9540748..9541058 67..377 1540 99.7 Plus
2L 23513712 2L 9541318..9541575 524..781 1290 100 Plus
2L 23513712 2L 9541116..9541265 376..525 750 100 Plus
2L 23513712 2L 9541634..9541747 782..895 570 100 Plus
2L 23513712 2L 9540644..9540698 17..71 275 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:34:06 has no hits.

BS14494.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:51 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:01 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:45 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..1000 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:51 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:54 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
CG17855-RA 122..1000 17..895 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:54 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9540644..9540698 17..71 100 -> Plus
2L 9541318..9541575 524..781 100 -> Plus
2L 9541634..9541747 782..895 100   Plus
2L 9540753..9541058 72..377 100 -> Plus
2L 9541118..9541263 378..523 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:45 Download gff for BS14494.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9540644..9540698 17..71 100 -> Plus
arm_2L 9540753..9541058 72..377 100 -> Plus
arm_2L 9541118..9541263 378..523 100 -> Plus
arm_2L 9541318..9541575 524..781 100 -> Plus
arm_2L 9541634..9541747 782..895 100   Plus

BS14494.pep Sequence

Translation from 16 to 894

> BS14494.pep
MEKRATSTMQVLYAELAAAKSRSAELEEENILLRHRLNRASASHSTNAAI
NVEAKIMVFQLEEERDRLVETLQKHKKKYNKLHDAYLEKVKRCRALEEMF
KRQKTLTGLVMKSSLDQRNAEQRMAMEKRQSAQSDVNELNELKAKVEKLQ
RALDESYDIIDEMDFELESVELLEMQNQSLRDELAAFKAKSEEGATSLPA
SLPNDDDPPPKYEEDYPGQHHKAMQARRCSSSSESDPKDDDADAETMERA
ALTHSLIQTVETESNALRRELLRSRCQRTIRAKLEKESEPVD*

BS14494.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG17855-PA 292 CG17855-PA 1..292 1..292 1452 100 Plus