Clone Sequence Records
BS14494.3prime Sequence
781 bp (780 high quality bases) assembled on 2006-10-13
> BS14494.3prime
ATGGTCTAGAAAGCTTCTAATCAACAGGCTCGCTTTCTTTCTCCAACTTG
GCGCGAATTGTTCTTTGACAGCGGGATCTCAACAATTCCCGTCTTAGGGC
ATTGCTCTCTGTTTCCACAGTTTGTATGAGGCTATGGGTTAAAGCAGCTC
TTTCCATAGTTTCTGCGTCGGCATCATCATCCTTGGGGTCAGATTCACTG
CTAGAGGAGCAGCGCCGGGCCTGCATAGCTTTATGATGCTGTCCGGGATA
GTCTTCCTCATATTTGGGCGGTGGGTCGTCATCGTTGGGTAGCGAGGCCG
GCAGACTGGTCGCTCCTTCTTCTGATTTTGCCTTAAAAGCGGCTAATTCG
TCCCGCAAGGATTGGTTTTGCATTTCCAGTAATTCCACGCTCTCAAGTTC
AAAATCCATTTCGTCAATAATGTCGTATGACTCATCAAGGGCTCTTTGAA
GTTTTTCTACTTTGGCCTTCAGCTCGTTCAATTCGTTGACATCGCTTTGG
GCCGACTGCCTTTTCTCCATAGCCATTCGTTGCTCTGCATTTCTTTGATC
TAAAGAGGACTTCATTACCAAGCCTGTAAGCGTCTTCTGCCGTTTAAACA
TCTCCTCCAAAGCACGACAACGTTTCACTTTCTCCAGATAAGCGTCATGC
AGTTTGTTGTACTTCTTCTTGTGCTTCTGCAGTGTTTCCACCAGACGATC
TCGTTCCTCCTCCAATTGGAAGACCATGATCTTGGCCTCCACATTTATGG
CCGCATTGGTGCTGTGGCTGGCAGATGCGCG
BS14494.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 879 | CG17855-RA | 115..879 | 781..17 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:43:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 236..1000 | 781..17 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9541318..9541575 | 388..131 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 9540812..9541058 | 781..535 | 1235 | 100 | Minus |
2L | 23513712 | 2L | 9541116..9541265 | 536..387 | 750 | 100 | Minus |
2L | 23513712 | 2L | 9541634..9541747 | 130..17 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:43:38 has no hits.
BS14494.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:53 Download gff for
BS14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-PA | 115..879 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:21 Download gff for
BS14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 236..1000 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:21 Download gff for
BS14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 236..1000 | 17..781 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:21 Download gff for
BS14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9540812..9541058 | 535..781 | 100 | -> | Minus |
2L | 9541118..9541263 | 389..534 | 100 | -> | Minus |
2L | 9541318..9541575 | 131..388 | 100 | -> | Minus |
2L | 9541634..9541747 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:21 Download gff for
BS14494.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9540812..9541058 | 535..781 | 100 | -> | Minus |
arm_2L | 9541118..9541263 | 389..534 | 100 | -> | Minus |
arm_2L | 9541318..9541575 | 131..388 | 100 | -> | Minus |
arm_2L | 9541634..9541747 | 17..130 | 100 | | Minus |
BS14494.5prime Sequence
893 bp (795 high quality bases) assembled on 2006-10-13
> BS14494.5prime
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAAAAGAAAGCGAGCCTGTTGATTA
BS14494.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 879 | CG17855-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 122..999 | 17..893 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9540748..9541058 | 67..377 | 1540 | 99.7 | Plus |
2L | 23513712 | 2L | 9541318..9541575 | 524..781 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 9541116..9541265 | 376..525 | 750 | 100 | Plus |
2L | 23513712 | 2L | 9541634..9541746 | 782..893 | 515 | 99.1 | Plus |
2L | 23513712 | 2L | 9540644..9540698 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:05:19 has no hits.
BS14494.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:54 Download gff for
BS14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-PA | 1..877 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:23 Download gff for
BS14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..998 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:34 Download gff for
BS14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..998 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:34 Download gff for
BS14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
2L | 9541634..9541745 | 782..892 | 99 | | Plus |
2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:23 Download gff for
BS14494.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
arm_2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
arm_2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
arm_2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
arm_2L | 9541634..9541745 | 782..892 | 99 | | Plus |
BS14494.complete Sequence
911 bp assembled on 2006-11-01
GenBank Submission: FJ637683
> BS14494.complete
GAAGTTATCAGTCGACATGGAGAAACGTGCTACATCTACCATGCAGGTTC
TCTATGCAGAACTGGCTGCCGCAAAGTCCAGAAGTGCGGAGCTGGAGGAG
GAAAACATTTTGCTGCGCCATCGACTAAATCGCGCATCTGCCAGCCACAG
CACCAATGCGGCCATAAATGTGGAGGCCAAGATCATGGTCTTCCAATTGG
AGGAGGAACGAGATCGTCTGGTGGAAACACTGCAGAAGCACAAGAAGAAG
TACAACAAACTGCATGACGCTTATCTGGAGAAAGTGAAACGTTGTCGTGC
TTTGGAGGAGATGTTTAAACGGCAGAAGACGCTTACAGGCTTGGTAATGA
AGTCCTCTTTAGATCAAAGAAATGCAGAGCAACGAATGGCTATGGAGAAA
AGGCAGTCGGCCCAAAGCGATGTCAACGAATTGAACGAGCTGAAGGCCAA
AGTAGAAAAACTTCAAAGAGCCCTTGATGAGTCATACGACATTATTGACG
AAATGGATTTTGAACTTGAGAGCGTGGAATTACTGGAAATGCAAAACCAA
TCCTTGCGGGACGAATTAGCCGCTTTTAAGGCAAAATCAGAAGAAGGAGC
GACCAGTCTGCCGGCCTCGCTACCCAACGATGACGACCCACCGCCCAAAT
ATGAGGAAGACTATCCCGGACAGCATCATAAAGCTATGCAGGCCCGGCGC
TGCTCCTCTAGCAGTGAATCTGACCCCAAGGATGATGATGCCGACGCAGA
AACTATGGAAAGAGCTGCTTTAACCCATAGCCTCATACAAACTGTGGAAA
CAGAGAGCAATGCCCTAAGACGGGAATTGTTGAGATCCCGCTGTCAAAGA
ACAATTCGCGCCAAGTTGGAGAAAGAAAGCGAGCCTGTTGATTAGAAGCT
TTCTAGACCAT
BS14494.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 879 | CG17855-PA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-RA | 1733 | CG17855-RA | 122..1000 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9540748..9541058 | 67..377 | 1540 | 99.7 | Plus |
2L | 23513712 | 2L | 9541318..9541575 | 524..781 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 9541116..9541265 | 376..525 | 750 | 100 | Plus |
2L | 23513712 | 2L | 9541634..9541747 | 782..895 | 570 | 100 | Plus |
2L | 23513712 | 2L | 9540644..9540698 | 17..71 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:34:06 has no hits.
BS14494.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:51 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:01 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:45 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..1000 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:51 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:54 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17855-RA | 122..1000 | 17..895 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:54 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
2L | 9541634..9541747 | 782..895 | 100 | | Plus |
2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:45 Download gff for
BS14494.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9540644..9540698 | 17..71 | 100 | -> | Plus |
arm_2L | 9540753..9541058 | 72..377 | 100 | -> | Plus |
arm_2L | 9541118..9541263 | 378..523 | 100 | -> | Plus |
arm_2L | 9541318..9541575 | 524..781 | 100 | -> | Plus |
arm_2L | 9541634..9541747 | 782..895 | 100 | | Plus |
BS14494.pep Sequence
Translation from 16 to 894
> BS14494.pep
MEKRATSTMQVLYAELAAAKSRSAELEEENILLRHRLNRASASHSTNAAI
NVEAKIMVFQLEEERDRLVETLQKHKKKYNKLHDAYLEKVKRCRALEEMF
KRQKTLTGLVMKSSLDQRNAEQRMAMEKRQSAQSDVNELNELKAKVEKLQ
RALDESYDIIDEMDFELESVELLEMQNQSLRDELAAFKAKSEEGATSLPA
SLPNDDDPPPKYEEDYPGQHHKAMQARRCSSSSESDPKDDDADAETMERA
ALTHSLIQTVETESNALRRELLRSRCQRTIRAKLEKESEPVD*
BS14494.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17855-PA | 292 | CG17855-PA | 1..292 | 1..292 | 1452 | 100 | Plus |