Clone Sequence Records
BS14506.5prime Sequence
743 bp (741 high quality bases) assembled on 2006-10-13
> BS14506.5prime
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGG
BS14506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3668-PA | 1371 | fd59A-RA | 1..727 | 17..743 | 3510 | 99.3 | Plus |
CG5069-PA | 1527 | croc-RA | 339..401 | 400..462 | 140 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd59A-RA | 2228 | CG3668-RA | 341..1070 | 14..743 | 3575 | 99.3 | Plus |
croc-RA | 2347 | CG5069-RA | 490..773 | 266..549 | 355 | 75.4 | Plus |
slp1-RA | 1425 | CG16738-RA | 598..702 | 400..504 | 225 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22869174..22869548 | 369..743 | 1830 | 99.2 | Plus |
2R | 25286936 | 2R | 22868499..22868854 | 14..369 | 1750 | 99.4 | Plus |
3L | 28110227 | 3L | 21475707..21475990 | 549..266 | 340 | 74.6 | Minus |
3R | 32079331 | 3R | 25083736..25083880 | 417..561 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:58:20 has no hits.
BS14506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:57 Download gff for
BS14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3668-PA | 1..727 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:38 Download gff for
BS14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 341..1070 | 14..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:53 Download gff for
BS14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 341..1070 | 14..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:53 Download gff for
BS14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22868499..22868854 | 14..369 | 99 | -> | Plus |
2R | 22869175..22869548 | 370..743 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:38 Download gff for
BS14506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18756022..18756377 | 14..369 | 99 | -> | Plus |
arm_2R | 18756698..18757071 | 370..743 | 99 | | Plus |
BS14506.3prime Sequence
741 bp (740 high quality bases) assembled on 2006-10-13
> BS14506.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTGGTCTCCTCCTGGCTGCCACCGCGA
TGCAGGTGGTGGCCAATCAGCGTCTCGATGCGAAAGTCCTTGGCGCTGCT
CTGTTTGCTGGTCCGCAGAACCAGGGGCTCGCTATCGAAGCGTCTCCTTG
GACTTGAATCGGACGCCTCGGCAGAAGCCTCAAAGATCAACGCTTCCGGC
GGCGCATCCAGGCGATTTGTACAGGCGCTGTCCACCGAGTCCGAGATATG
TGAGTCCTCCTGCTCATTGCCGCTCTCCACGTCGATCTTGTCCTCGCAGG
AGTCGTCATCTCCCTCGGCTTCCGCATCGGCCTCTGTGTCCGCATCGTCA
TTGTACACATTGAGATCCATGTAACCACCGCCGGCGGACAGCCGTTCTGC
GTAATCCCTGTGGCCGGGAATGCCCGCAGCACTGGCCACAGTCGCCACAT
CGAAGGCGTATGGGCTTTTGTACTTGGAGCCACGGCTGCTCTCGGATCCC
CCGCCTACTCCTCCGCCGGAGCCACTGCTGTGCGGTAGTGCATCCAGGAC
ATCCGCTCCTCGACCGCGATTCATGAAGGGCAGCCGGTCGAACTTGTCCC
CCGACTGACTTCCCTGGTAGAAGGATGCTTCGGCATTCGCAAAGAAGTTA
AACTTCTTGTCCGCTCGCAACGCTGAGTCAAAGACATCCGCCGGATTATG
GACCACGTCGAACTCCCTGCTCCCATTGAAGTTGGGCACGT
BS14506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3668-PA | 1371 | fd59A-RA | 647..1371 | 741..17 | 3500 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd59A-RA | 2228 | CG3668-RA | 990..1714 | 741..17 | 3550 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22869468..22870192 | 741..17 | 3550 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:39:36 has no hits.
BS14506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:57 Download gff for
BS14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3668-PA | 647..1371 | 17..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:10 Download gff for
BS14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 990..1716 | 13..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:25 Download gff for
BS14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 990..1716 | 13..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:25 Download gff for
BS14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22869468..22870194 | 13..741 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:10 Download gff for
BS14506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18756991..18757717 | 13..741 | 99 | | Minus |
BS14506.complete Sequence
1403 bp assembled on 2006-11-01
GenBank Submission: FJ638861
> BS14506.complete
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAGAA
GTTTAACTTCTTTGCGAATGCCGAAGCATCCTTCTACCAGGGAAGTCAGT
CGGGGGACAAGTTCGACCGGCTGCCCTTCATGAATCGCGGTCGAGGAGCG
GATGTCCTGGATGCACTACCGCACAGCAGTGGCTCCGGCGGAGGAGTAGG
CGGGGGATCCGAGAGCAGCCGTGGCTCCAAGTACAAAAGCCCATACGCCT
TCGATGTGGCGACTGTGGCCAGTGCTGCGGGCATTCCCGGCCACAGGGAT
TACGCAGAACGGCTGTCCGCCGGCGGTGGTTACATGGATCTCAATGTGTA
CAATGACGATGCGGACACAGAGGCCGATGCGGAAGCCGAGGGAGATGACG
ACTCCTGCGAGGACAAGATCGACGTGGAGAGCGGCAATGAGCAGGAGGAC
TCACATATCTCGGACTCGGTGGACAGCGCCTGTACAAATCGCCTGGATGC
GCCGCCGGAAGCGTTGATCTTTGAGGCTTCTGCCGAGGCGTCCGATTCAA
GTCCAAGGAGACGCTTCGATAGCGAGCCCCTGGTTCTGCGGACCAGCAAA
CAGAGCAGCGCCAAGGACTTTCGCATCGAGACGCTGATTGGCCACCACCT
GCATCGCGGTGGCAGCCAGGAGGAGACCAGCGACTAGAAGCTTTCTAGAC
CAT
BS14506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd59A-RA | 1371 | CG3668-PA | 1..1371 | 17..1387 | 6735 | 99.4 | Plus |
croc-RA | 1527 | CG5069-PA | 205..488 | 266..549 | 340 | 74.6 | Plus |
fd96Ca-RB | 1119 | CG11921-PB | 185..329 | 417..561 | 215 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd59A-RA | 2228 | CG3668-RA | 341..1714 | 14..1387 | 6750 | 99.4 | Plus |
fd96Ca-RB | 2195 | CG11921-RB | 1053..1197 | 417..561 | 215 | 76.6 | Plus |
fd96Ca-RA | 1702 | CG11921-RA | 560..704 | 417..561 | 215 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22869174..22870192 | 369..1387 | 5005 | 99.4 | Plus |
2R | 25286936 | 2R | 22868499..22868854 | 14..369 | 1750 | 99.4 | Plus |
3L | 28110227 | 3L | 21475707..21475990 | 549..266 | 340 | 74.6 | Minus |
3R | 32079331 | 3R | 25083736..25083880 | 417..561 | 215 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:17:16 has no hits.
BS14506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:31 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 1..1371 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:38 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 1979..3354 | 14..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:16 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 344..1714 | 17..1387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:32 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 1979..3354 | 14..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:40 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fd59A-RA | 344..1714 | 17..1387 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:40 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22868502..22868854 | 17..369 | 99 | -> | Plus |
2R | 22869175..22870192 | 370..1387 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:16 Download gff for
BS14506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18756025..18756377 | 17..369 | 99 | -> | Plus |
arm_2R | 18756698..18757715 | 370..1387 | 99 | | Plus |
BS14506.pep Sequence
Translation from 16 to 1386
> BS14506.pep
MHTSTDPMHTLHDSVSLSPPLIKSSRGGSSIGNGIGCSASSRTAAADAMS
MGCDDSDIEPSSMGGSGAAGGNGDGSGSSGGPLVKPPYSYIALITMAILQ
SPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFIKVPREP
GNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKRAPTMQRFSFPAVFGTLS
PFWIRKPVPLVPVHFNVPNFNGSREFDVVHNPADVFDSALRADKKFNFFA
NAEASFYQGSQSGDKFDRLPFMNRGRGADVLDALPHSSGSGGGVGGGSES
SRGSKYKSPYAFDVATVASAAGIPGHRDYAERLSAGGGYMDLNVYNDDAD
TEADAEAEGDDDSCEDKIDVESGNEQEDSHISDSVDSACTNRLDAPPEAL
IFEASAEASDSSPRRRFDSEPLVLRTSKQSSAKDFRIETLIGHHLHRGGS
QEETSD*
BS14506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fd59A-PA | 456 | CG3668-PA | 1..456 | 1..456 | 2411 | 100 | Plus |
croc-PA | 508 | CG5069-PA | 1..173 | 8..188 | 400 | 47.8 | Plus |
fkh-PD | 510 | CG10002-PD | 136..307 | 17..182 | 361 | 44.8 | Plus |
fkh-PB | 510 | CG10002-PB | 136..307 | 17..182 | 361 | 44.8 | Plus |
fkh-PA | 510 | CG10002-PA | 136..307 | 17..182 | 361 | 44.8 | Plus |