Clone BS14506 Report

Search the DGRC for BS14506

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptfd59A-RA
Protein status:BS14506.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14506.5prime Sequence

743 bp (741 high quality bases) assembled on 2006-10-13

> BS14506.5prime
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGG

BS14506.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3668-PA 1371 fd59A-RA 1..727 17..743 3510 99.3 Plus
CG5069-PA 1527 croc-RA 339..401 400..462 140 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
fd59A-RA 2228 CG3668-RA 341..1070 14..743 3575 99.3 Plus
croc-RA 2347 CG5069-RA 490..773 266..549 355 75.4 Plus
slp1-RA 1425 CG16738-RA 598..702 400..504 225 82.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22869174..22869548 369..743 1830 99.2 Plus
2R 25286936 2R 22868499..22868854 14..369 1750 99.4 Plus
3L 28110227 3L 21475707..21475990 549..266 340 74.6 Minus
3R 32079331 3R 25083736..25083880 417..561 215 76.6 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:20 has no hits.

BS14506.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:57 Download gff for BS14506.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3668-PA 1..727 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:38 Download gff for BS14506.5prime
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 341..1070 14..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:53 Download gff for BS14506.5prime
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 341..1070 14..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:53 Download gff for BS14506.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22868499..22868854 14..369 99 -> Plus
2R 22869175..22869548 370..743 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:38 Download gff for BS14506.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18756022..18756377 14..369 99 -> Plus
arm_2R 18756698..18757071 370..743 99   Plus

BS14506.3prime Sequence

741 bp (740 high quality bases) assembled on 2006-10-13

> BS14506.3prime
ATGGTCTAGAAAGCTTCTAGTCGCTGGTCTCCTCCTGGCTGCCACCGCGA
TGCAGGTGGTGGCCAATCAGCGTCTCGATGCGAAAGTCCTTGGCGCTGCT
CTGTTTGCTGGTCCGCAGAACCAGGGGCTCGCTATCGAAGCGTCTCCTTG
GACTTGAATCGGACGCCTCGGCAGAAGCCTCAAAGATCAACGCTTCCGGC
GGCGCATCCAGGCGATTTGTACAGGCGCTGTCCACCGAGTCCGAGATATG
TGAGTCCTCCTGCTCATTGCCGCTCTCCACGTCGATCTTGTCCTCGCAGG
AGTCGTCATCTCCCTCGGCTTCCGCATCGGCCTCTGTGTCCGCATCGTCA
TTGTACACATTGAGATCCATGTAACCACCGCCGGCGGACAGCCGTTCTGC
GTAATCCCTGTGGCCGGGAATGCCCGCAGCACTGGCCACAGTCGCCACAT
CGAAGGCGTATGGGCTTTTGTACTTGGAGCCACGGCTGCTCTCGGATCCC
CCGCCTACTCCTCCGCCGGAGCCACTGCTGTGCGGTAGTGCATCCAGGAC
ATCCGCTCCTCGACCGCGATTCATGAAGGGCAGCCGGTCGAACTTGTCCC
CCGACTGACTTCCCTGGTAGAAGGATGCTTCGGCATTCGCAAAGAAGTTA
AACTTCTTGTCCGCTCGCAACGCTGAGTCAAAGACATCCGCCGGATTATG
GACCACGTCGAACTCCCTGCTCCCATTGAAGTTGGGCACGT

BS14506.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3668-PA 1371 fd59A-RA 647..1371 741..17 3500 99.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
fd59A-RA 2228 CG3668-RA 990..1714 741..17 3550 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22869468..22870192 741..17 3550 99.3 Minus
Blast to na_te.dros performed on 2015-02-03 06:39:36 has no hits.

BS14506.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:57 Download gff for BS14506.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3668-PA 647..1371 17..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:10 Download gff for BS14506.3prime
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 990..1716 13..741 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:25 Download gff for BS14506.3prime
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 990..1716 13..741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:25 Download gff for BS14506.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22869468..22870194 13..741 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:10 Download gff for BS14506.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18756991..18757717 13..741 99   Minus

BS14506.complete Sequence

1403 bp assembled on 2006-11-01

GenBank Submission: FJ638861

> BS14506.complete
GAAGTTATCAGTCGACATGCACACCAGCACGGATCCCATGCACACATTGC
ACGACAGCGTCTCCCTCTCGCCGCCGCTCATCAAAAGCTCCAGAGGCGGC
TCCTCCATCGGCAACGGAATCGGATGCAGTGCGTCCTCGCGCACTGCCGC
CGCAGATGCCATGTCCATGGGCTGCGACGACAGCGACATCGAGCCGTCGT
CCATGGGCGGAAGTGGTGCCGCCGGCGGCAACGGAGACGGCTCGGGATCT
TCGGGTGGTCCCCTGGTAAAGCCACCATACTCCTACATAGCTCTAATCAC
CATGGCCATTCTTCAGTCGCCGCACAAGAAGCTCACGCTCAGCGGGATCT
GTGATTTCATCATGTCGCGCTTTCCATACTACAAGGACAAATTCCCCGCC
TGGCAGAACTCCATCCGGCACAATCTCAGCCTGAACGACTGCTTCATAAA
GGTGCCCCGCGAGCCGGGAAATCCCGGAAAGGGCAACTTCTGGACGCTGG
ACCCGCTGGCGGAGGACATGTTCGACAACGGCAGTTTCCTGCGCCGGCGG
AAGCGCTACAAACGGGCGCCCACCATGCAACGCTTCTCGTTTCCGGCGGT
CTTTGGCACGCTGTCTCCATTTTGGATCCGCAAGCCCGTGCCCCTCGTGC
CAGTGCACTTCAACGTGCCCAACTTCAATGGGAGCAGGGAGTTCGACGTG
GTCCATAATCCGGCGGATGTCTTTGACTCAGCGCTGCGAGCGGACAAGAA
GTTTAACTTCTTTGCGAATGCCGAAGCATCCTTCTACCAGGGAAGTCAGT
CGGGGGACAAGTTCGACCGGCTGCCCTTCATGAATCGCGGTCGAGGAGCG
GATGTCCTGGATGCACTACCGCACAGCAGTGGCTCCGGCGGAGGAGTAGG
CGGGGGATCCGAGAGCAGCCGTGGCTCCAAGTACAAAAGCCCATACGCCT
TCGATGTGGCGACTGTGGCCAGTGCTGCGGGCATTCCCGGCCACAGGGAT
TACGCAGAACGGCTGTCCGCCGGCGGTGGTTACATGGATCTCAATGTGTA
CAATGACGATGCGGACACAGAGGCCGATGCGGAAGCCGAGGGAGATGACG
ACTCCTGCGAGGACAAGATCGACGTGGAGAGCGGCAATGAGCAGGAGGAC
TCACATATCTCGGACTCGGTGGACAGCGCCTGTACAAATCGCCTGGATGC
GCCGCCGGAAGCGTTGATCTTTGAGGCTTCTGCCGAGGCGTCCGATTCAA
GTCCAAGGAGACGCTTCGATAGCGAGCCCCTGGTTCTGCGGACCAGCAAA
CAGAGCAGCGCCAAGGACTTTCGCATCGAGACGCTGATTGGCCACCACCT
GCATCGCGGTGGCAGCCAGGAGGAGACCAGCGACTAGAAGCTTTCTAGAC
CAT

BS14506.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
fd59A-RA 1371 CG3668-PA 1..1371 17..1387 6735 99.4 Plus
croc-RA 1527 CG5069-PA 205..488 266..549 340 74.6 Plus
fd96Ca-RB 1119 CG11921-PB 185..329 417..561 215 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
fd59A-RA 2228 CG3668-RA 341..1714 14..1387 6750 99.4 Plus
fd96Ca-RB 2195 CG11921-RB 1053..1197 417..561 215 76.6 Plus
fd96Ca-RA 1702 CG11921-RA 560..704 417..561 215 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22869174..22870192 369..1387 5005 99.4 Plus
2R 25286936 2R 22868499..22868854 14..369 1750 99.4 Plus
3L 28110227 3L 21475707..21475990 549..266 340 74.6 Minus
3R 32079331 3R 25083736..25083880 417..561 215 76.6 Plus
Blast to na_te.dros performed on 2014-11-27 20:17:16 has no hits.

BS14506.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:31 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 1..1371 17..1387 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:38 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 1979..3354 14..1391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:16 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 344..1714 17..1387 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:32 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 1979..3354 14..1391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:18:40 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
fd59A-RA 344..1714 17..1387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:18:40 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22868502..22868854 17..369 99 -> Plus
2R 22869175..22870192 370..1387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:16 Download gff for BS14506.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18756025..18756377 17..369 99 -> Plus
arm_2R 18756698..18757715 370..1387 99   Plus

BS14506.pep Sequence

Translation from 16 to 1386

> BS14506.pep
MHTSTDPMHTLHDSVSLSPPLIKSSRGGSSIGNGIGCSASSRTAAADAMS
MGCDDSDIEPSSMGGSGAAGGNGDGSGSSGGPLVKPPYSYIALITMAILQ
SPHKKLTLSGICDFIMSRFPYYKDKFPAWQNSIRHNLSLNDCFIKVPREP
GNPGKGNFWTLDPLAEDMFDNGSFLRRRKRYKRAPTMQRFSFPAVFGTLS
PFWIRKPVPLVPVHFNVPNFNGSREFDVVHNPADVFDSALRADKKFNFFA
NAEASFYQGSQSGDKFDRLPFMNRGRGADVLDALPHSSGSGGGVGGGSES
SRGSKYKSPYAFDVATVASAAGIPGHRDYAERLSAGGGYMDLNVYNDDAD
TEADAEAEGDDDSCEDKIDVESGNEQEDSHISDSVDSACTNRLDAPPEAL
IFEASAEASDSSPRRRFDSEPLVLRTSKQSSAKDFRIETLIGHHLHRGGS
QEETSD*

BS14506.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
fd59A-PA 456 CG3668-PA 1..456 1..456 2411 100 Plus
croc-PA 508 CG5069-PA 1..173 8..188 400 47.8 Plus
fkh-PD 510 CG10002-PD 136..307 17..182 361 44.8 Plus
fkh-PB 510 CG10002-PB 136..307 17..182 361 44.8 Plus
fkh-PA 510 CG10002-PA 136..307 17..182 361 44.8 Plus