Clone BS14507 Report

Search the DGRC for BS14507

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:7
Vector:pDNR-Dual
Associated Gene/Transcriptcbt-RB
Protein status:BS14507.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14507.3prime Sequence

742 bp (741 high quality bases) assembled on 2006-10-13

> BS14507.3prime
ATGGTCTAGAAAGCTTTCATCGCTGCACTTGAAGCAGGGTTCCGCCGAAG
GTGAAACTGCTGGCCTGCTGCTGTAGCCTCAGCAGATCTTGGGCGCTGTA
GACTTGCAAGCTGGCGGAACTGATGGGCGAGGAACTAGCGCTGGAGCCCG
CCGGTGCTATCGCTCGCAAATGGAGCGAGGCATCGCAGAGGGAAGCCGCT
ACCGAAGCTGATGTGTTGTTGTTGGCCAGGGAGACATGTCGATTCACTCC
GTTCGCCTTGTCCTTGTTGTGCCGTTTGACGTGCTTCGACAGGTGATCGC
TTCTCATGAATTTCTTCTGGCAGACGCTGCACTGGAATTTCTTTTCACCG
GTGTGGGTCCGTTTGTGTCGGGACAACTCATCGGAACGGGAGAATCGTTT
GTCACAGTTCTCCCACTTGCAGATAAAGGGTCGCTCGCCGGTGTGAACCC
TCTGGTGGGCCTTCAGATGACTGCTTTTGAAGTAATTCTTGCCGCAATCG
GGAAAACTGCACTCGTAGATGCGACTTCTGGTGGCCGCCGCCTGGGCGGC
CGTAATTCTGGTTGTTAGTTTCTCCTCGGACATTGTTGGCGTTTTGGGTA
CGGGTGTGGGGCTCTGTTGGGCGGCCACTGTGCTGAGCAGGATAAGTTGG
CTGGCAGACGAAGCTACTGGGCTAACATATATCGGTGTTAGAATAGGTTT
TATTTCCTCCTCCTTGATGCATTCCGCTGGAGCAGGTGGCGT

BS14507.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4427-PA 1287 cbt-RA 562..1287 742..17 3605 99.8 Minus
CG4427-PB 1044 cbt-RB 319..1044 742..17 3605 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 1095..1820 742..17 3615 99.9 Minus
cbt-RB 3243 CG4427-RB 1977..2702 742..17 3615 99.9 Minus
cbt-RA 2041 CG4427-RA 775..1500 742..17 3615 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 476987..477712 17..742 3615 99.9 Plus
Blast to na_te.dros performed on 2015-01-30 17:49:06 has no hits.

BS14507.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:58 Download gff for BS14507.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4427-PB 319..1044 17..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:38 Download gff for BS14507.3prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 775..1504 14..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:26 Download gff for BS14507.3prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 775..1504 14..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:26 Download gff for BS14507.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 476983..477712 14..742 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:38 Download gff for BS14507.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 476983..477712 14..742 99   Plus

BS14507.5prime Sequence

906 bp (757 high quality bases) assembled on 2006-10-13

> BS14507.5prime
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCA

BS14507.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4427-PA 1287 cbt-RA 244..1133 17..906 4375 99.6 Plus
CG4427-PB 1044 cbt-RB 1..890 17..906 4375 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 777..1666 17..906 4405 99.7 Plus
cbt-RB 3243 CG4427-RB 1659..2548 17..906 4405 99.7 Plus
cbt-RA 2041 CG4427-RA 457..1346 17..906 4405 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 477141..478030 906..17 4405 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 16:06:22 has no hits.

BS14507.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:58 Download gff for BS14507.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4427-PB 1..889 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:35 Download gff for BS14507.5prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1345 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:51 Download gff for BS14507.5prime
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1345 17..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:51 Download gff for BS14507.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 477142..478030 17..905 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:35 Download gff for BS14507.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 477142..478030 17..905 99   Minus

BS14507.complete Sequence

1076 bp assembled on 2006-11-01

GenBank Submission: FJ637684

> BS14507.complete
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCATTTGCGAGCGATAGCACCGGCGGGCTCCAGCGCTAGTTCCTCGC
CCATCAGTTCCGCCAGCTTGCAAGTCTACAGCGCCCAAGATCTGCTGAGG
CTACAGCAGCAGGCCAGCAGTTTCACCTTCGGCGGAACCCTGCTTCAAGT
GCAGCGATGAAAGCTTTCTAGACCAT

BS14507.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:54
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 1044 CG4427-PC 1..1044 17..1060 5175 99.7 Plus
cbt-RB 1044 CG4427-PB 1..1044 17..1060 5175 99.7 Plus
cbt-RA 1287 CG4427-PA 244..1287 17..1060 5175 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-RC 2361 CG4427-RC 777..1820 17..1060 5175 99.7 Plus
cbt-RB 3243 CG4427-RB 1659..2702 17..1060 5175 99.7 Plus
cbt-RA 2041 CG4427-RA 457..1500 17..1060 5175 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 476987..478030 1060..17 5175 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 16:05:53 has no hits.

BS14507.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:33 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1..1044 17..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:40 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1017..2064 17..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:21 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1499 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:33 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RB 1017..2064 17..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:26 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
cbt-RA 457..1499 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:26 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
2L 476988..478030 17..1059 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:21 Download gff for BS14507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 476988..478030 17..1059 99   Minus

BS14507.pep Sequence

Translation from 16 to 1059

> BS14507.pep
MSMTPPPDQKLDDDQKAERVSVIMRVNSSGAVSSSSQDENSSSSTSCCSS
SSNTNTSTSSVPPTVEDDYPEANVWRNLKFKMNRKRAAEVALPPVQTPET
PVAKLVTPPAPAECIKEEEIKPILTPIYVSPVASSASQLILLSTVAAQQS
PTPVPKTPTMSEEKLTTRITAAQAAATRSRIYECSFPDCGKNYFKSSHLK
AHQRVHTGERPFICKWENCDKRFSRSDELSRHKRTHTGEKKFQCSVCQKK
FMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLRA
IAPAGSSASSSPISSASLQVYSAQDLLRLQQQASSFTFGGTLLQVQR*

BS14507.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
cbt-PC 347 CG4427-PC 1..347 1..347 1780 100 Plus
cbt-PB 347 CG4427-PB 1..347 1..347 1780 100 Plus
cbt-PA 428 CG4427-PA 82..428 1..347 1780 100 Plus
Spps-PA 968 CG5669-PA 606..874 89..316 364 30.9 Plus
Sp1-PB 520 CG1343-PB 127..298 134..290 359 44.8 Plus