Clone Sequence Records
BS14507.3prime Sequence
742 bp (741 high quality bases) assembled on 2006-10-13
> BS14507.3prime
ATGGTCTAGAAAGCTTTCATCGCTGCACTTGAAGCAGGGTTCCGCCGAAG
GTGAAACTGCTGGCCTGCTGCTGTAGCCTCAGCAGATCTTGGGCGCTGTA
GACTTGCAAGCTGGCGGAACTGATGGGCGAGGAACTAGCGCTGGAGCCCG
CCGGTGCTATCGCTCGCAAATGGAGCGAGGCATCGCAGAGGGAAGCCGCT
ACCGAAGCTGATGTGTTGTTGTTGGCCAGGGAGACATGTCGATTCACTCC
GTTCGCCTTGTCCTTGTTGTGCCGTTTGACGTGCTTCGACAGGTGATCGC
TTCTCATGAATTTCTTCTGGCAGACGCTGCACTGGAATTTCTTTTCACCG
GTGTGGGTCCGTTTGTGTCGGGACAACTCATCGGAACGGGAGAATCGTTT
GTCACAGTTCTCCCACTTGCAGATAAAGGGTCGCTCGCCGGTGTGAACCC
TCTGGTGGGCCTTCAGATGACTGCTTTTGAAGTAATTCTTGCCGCAATCG
GGAAAACTGCACTCGTAGATGCGACTTCTGGTGGCCGCCGCCTGGGCGGC
CGTAATTCTGGTTGTTAGTTTCTCCTCGGACATTGTTGGCGTTTTGGGTA
CGGGTGTGGGGCTCTGTTGGGCGGCCACTGTGCTGAGCAGGATAAGTTGG
CTGGCAGACGAAGCTACTGGGCTAACATATATCGGTGTTAGAATAGGTTT
TATTTCCTCCTCCTTGATGCATTCCGCTGGAGCAGGTGGCGT
BS14507.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4427-PA | 1287 | cbt-RA | 562..1287 | 742..17 | 3605 | 99.8 | Minus |
CG4427-PB | 1044 | cbt-RB | 319..1044 | 742..17 | 3605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 1095..1820 | 742..17 | 3615 | 99.9 | Minus |
cbt-RB | 3243 | CG4427-RB | 1977..2702 | 742..17 | 3615 | 99.9 | Minus |
cbt-RA | 2041 | CG4427-RA | 775..1500 | 742..17 | 3615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 476987..477712 | 17..742 | 3615 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:49:06 has no hits.
BS14507.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:58 Download gff for
BS14507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4427-PB | 319..1044 | 17..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:38 Download gff for
BS14507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 775..1504 | 14..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:26 Download gff for
BS14507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 775..1504 | 14..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:26 Download gff for
BS14507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 476983..477712 | 14..742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:38 Download gff for
BS14507.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 476983..477712 | 14..742 | 99 | | Plus |
BS14507.5prime Sequence
906 bp (757 high quality bases) assembled on 2006-10-13
> BS14507.5prime
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCA
BS14507.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4427-PA | 1287 | cbt-RA | 244..1133 | 17..906 | 4375 | 99.6 | Plus |
CG4427-PB | 1044 | cbt-RB | 1..890 | 17..906 | 4375 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 777..1666 | 17..906 | 4405 | 99.7 | Plus |
cbt-RB | 3243 | CG4427-RB | 1659..2548 | 17..906 | 4405 | 99.7 | Plus |
cbt-RA | 2041 | CG4427-RA | 457..1346 | 17..906 | 4405 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 477141..478030 | 906..17 | 4405 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:06:22 has no hits.
BS14507.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:52:58 Download gff for
BS14507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4427-PB | 1..889 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:35 Download gff for
BS14507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1345 | 17..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:51 Download gff for
BS14507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1345 | 17..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:51 Download gff for
BS14507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 477142..478030 | 17..905 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:35 Download gff for
BS14507.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 477142..478030 | 17..905 | 99 | | Minus |
BS14507.complete Sequence
1076 bp assembled on 2006-11-01
GenBank Submission: FJ637684
> BS14507.complete
GAAGTTATCAGTCGACATGAGCATGACACCGCCGCCGGATCAAAAGCTGG
ACGATGATCAGAAAGCTGAAAGGGTTAGCGTCATCATGCGGGTCAACAGT
TCTGGCGCTGTCTCTTCTAGCAGCCAAGACGAGAACTCATCTAGTTCCAC
CTCCTGCTGTAGTTCCTCTTCCAACACAAACACAAGTACAAGTTCAGTAC
CACCCACTGTGGAGGACGACTATCCAGAGGCCAATGTGTGGCGCAATCTC
AAGTTCAAAATGAACAGAAAGCGTGCTGCAGAAGTGGCACTACCCCCAGT
ACAAACACCCGAGACACCAGTTGCGAAGCTTGTAACGCCACCTGCTCCAG
CGGAATGCATCAAGGAGGAGGAAATAAAACCTATTCTAACACCGATATAT
GTTAGCCCAGTAGCTTCGTCTGCCAGCCAACTTATCCTGCTCAGCACAGT
GGCCGCCCAACAGAGCCCCACACCCGTACCCAAAACGCCAACAATGTCCG
AGGAGAAACTAACAACCAGAATTACGGCCGCCCAGGCGGCGGCCACCAGA
AGTCGCATCTACGAGTGCAGTTTTCCCGATTGCGGCAAGAATTACTTCAA
AAGCAGTCATCTGAAGGCCCACCAGAGGGTTCACACCGGCGAGCGACCCT
TTATCTGCAAGTGGGAGAACTGTGACAAACGATTCTCCCGTTCCGATGAG
TTGTCCCGACACAAACGGACCCACACCGGTGAAAAGAAATTCCAGTGCAG
CGTCTGCCAGAAGAAATTCATGAGAAGCGATCACCTGTCGAAGCACGTCA
AACGGCACAACAAGGACAAGGCGAACGGAGTGAATCGACATGTCTCCCTG
GCCAACAACAACACATCAGCTTCGGTAGCGGCTTCCCTCTGCGATGCCTC
GCTCCATTTGCGAGCGATAGCACCGGCGGGCTCCAGCGCTAGTTCCTCGC
CCATCAGTTCCGCCAGCTTGCAAGTCTACAGCGCCCAAGATCTGCTGAGG
CTACAGCAGCAGGCCAGCAGTTTCACCTTCGGCGGAACCCTGCTTCAAGT
GCAGCGATGAAAGCTTTCTAGACCAT
BS14507.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 1044 | CG4427-PC | 1..1044 | 17..1060 | 5175 | 99.7 | Plus |
cbt-RB | 1044 | CG4427-PB | 1..1044 | 17..1060 | 5175 | 99.7 | Plus |
cbt-RA | 1287 | CG4427-PA | 244..1287 | 17..1060 | 5175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-RC | 2361 | CG4427-RC | 777..1820 | 17..1060 | 5175 | 99.7 | Plus |
cbt-RB | 3243 | CG4427-RB | 1659..2702 | 17..1060 | 5175 | 99.7 | Plus |
cbt-RA | 2041 | CG4427-RA | 457..1500 | 17..1060 | 5175 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 476987..478030 | 1060..17 | 5175 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:05:53 has no hits.
BS14507.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:33 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1..1044 | 17..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:40 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1017..2064 | 17..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:21 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1499 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:33 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RB | 1017..2064 | 17..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:26 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cbt-RA | 457..1499 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:26 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 476988..478030 | 17..1059 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:21 Download gff for
BS14507.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 476988..478030 | 17..1059 | 99 | | Minus |
BS14507.pep Sequence
Translation from 16 to 1059
> BS14507.pep
MSMTPPPDQKLDDDQKAERVSVIMRVNSSGAVSSSSQDENSSSSTSCCSS
SSNTNTSTSSVPPTVEDDYPEANVWRNLKFKMNRKRAAEVALPPVQTPET
PVAKLVTPPAPAECIKEEEIKPILTPIYVSPVASSASQLILLSTVAAQQS
PTPVPKTPTMSEEKLTTRITAAQAAATRSRIYECSFPDCGKNYFKSSHLK
AHQRVHTGERPFICKWENCDKRFSRSDELSRHKRTHTGEKKFQCSVCQKK
FMRSDHLSKHVKRHNKDKANGVNRHVSLANNNTSASVAASLCDASLHLRA
IAPAGSSASSSPISSASLQVYSAQDLLRLQQQASSFTFGGTLLQVQR*
BS14507.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cbt-PC | 347 | CG4427-PC | 1..347 | 1..347 | 1780 | 100 | Plus |
cbt-PB | 347 | CG4427-PB | 1..347 | 1..347 | 1780 | 100 | Plus |
cbt-PA | 428 | CG4427-PA | 82..428 | 1..347 | 1780 | 100 | Plus |
Spps-PA | 968 | CG5669-PA | 606..874 | 89..316 | 364 | 30.9 | Plus |
Sp1-PB | 520 | CG1343-PB | 127..298 | 134..290 | 359 | 44.8 | Plus |