Clone Sequence Records
BS14515.complete Sequence
1160 bp assembled on 2009-12-07
GenBank Submission: KX800362
> BS14515.complete
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAGCTGACCACCATGATGTTCCTATTCGAACTGATGGCCTTTTCGGCGC
TGCTCTGTGCGCTGCTCTTTATGCTGATTATCGTCAGCGGCACCAGTCAG
CTGATAATTGTTTGCATGTACATTAACATGATTCTGGCCCAAATACTGGC
CCTCTATTGGTATGCAAATGAGTTAAGGGAACAGAATCTGGCGGTGGCCA
CCGCAGCCTACGAAACGGAGTGGTTCACCTTCGACGTTCCACTGCGCAAA
AACATCCTGTTCATGATGATGAGGGCACAGCGGCCAGCTGCAATACTACT
GGGCAATATACGCCCCATCACTTTGGAACTGTTCCAAAACCTACTGAACA
CAACCTATACATTTTTTACTGTTCTCAAGCGAGTCTACGGATGAAAGCTT
TCTAGACCAT
BS14515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1128 | CG17584-PA | 1..1128 | 17..1144 | 5625 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 474..1603 | 16..1145 | 5635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843138..12843571 | 16..449 | 2170 | 100 | Plus |
2R | 25286936 | 2R | 12843674..12844060 | 448..834 | 1935 | 100 | Plus |
2R | 25286936 | 2R | 12844121..12844330 | 833..1042 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 12844466..12844568 | 1043..1145 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:40:13 has no hits.
BS14515.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:23 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 1..1128 | 17..1144 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:21 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1601 | 23..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:18 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1601 | 23..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:37 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1601 | 23..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:08 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 481..1601 | 23..1143 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:08 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843145..12843571 | 23..449 | 100 | -> | Plus |
2R | 12843676..12844058 | 450..832 | 100 | -> | Plus |
2R | 12844121..12844330 | 833..1042 | 100 | -> | Plus |
2R | 12844466..12844566 | 1043..1143 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:18 Download gff for
BS14515.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8731971..8732071 | 1043..1143 | 99 | | Plus |
arm_2R | 8730650..8731076 | 23..449 | 100 | -> | Plus |
arm_2R | 8731181..8731563 | 450..832 | 100 | -> | Plus |
arm_2R | 8731626..8731835 | 833..1042 | 100 | -> | Plus |
BS14515.3prime Sequence
824 bp (767 high quality bases) assembled on 2006-10-13
> BS14515.3prime
ATGGTCTAGAAAGCTTTCATCCGTAGACTCGCTTGAGAACAGTAAAAAAT
GTATAGGTTGTGTTCAGTAGGTTTTGGAACAGTTCCAAAGTGATGGGGCG
TATATTGCCCAGTAGTATTGCAGCTGGCCGCTGTGCCCTCATCATCATGA
ACAGGATGTTTTTGCGCAGTGGAACGTCGAAGGTGAACCACTCCGTTTCG
TAGGCTGCGGTGGCCACCGCCAGATTCTGTTCCCTTAACTCATTTGCATA
CCAATAGAGGGCCAGTATTTGGGCCAGAATCATGTTAATGTACATGCAAA
CAATTATCAGCTGACTGGTGCCGCTGACGATAATCAGCATAAAGAGCAGC
GCACAGAGCAGCGCCGAAAAGGCCATCAGTTCGAATAGGAACATCATGGT
GGTCAGCTCGTTTATGTGATCCATGTACTCGATAATGCTCTGCTGGTAAC
GTATGCAGGCTATGATCTCCTCCCTCAGTTCACGGGGATCGCGATCTCCG
TACGGATGCTTAAGCGCCACCTGGCGGAGGCGATGCTGCAAAGCCTTGCA
CCTCACAATGCCGAACATTATCAAGCCCACAATCAGACTGGTGTACGGAA
TGTACATGCAACAGCCCATCGGGGTGATGAGCATCTGANAGATGTACCAC
ATCTCATAGTACGGACTCTCGTACTCATTTAGACCAGGAATTTTGCTGCC
AAATGGCAGGACTCTTTCGCTGGAGGACAATGGGTACAGACCGAATCCCA
TGGATGTGAGCATGCCAAAGAACAGATTGCCCCTAGCCATCAACTTTCCC
ACCTTGTTCACCTGGTCCAATATT
BS14515.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17584-PA | 1128 | Or49b-RA | 321..1128 | 824..17 | 3996 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 795..1603 | 824..16 | 4019 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843674..12844060 | 713..327 | 1924 | 99.7 | Minus |
2R | 25286936 | 2R | 12844121..12844330 | 328..119 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 12843459..12843571 | 824..712 | 565 | 100 | Minus |
2R | 25286936 | 2R | 12844466..12844568 | 118..16 | 500 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:28:18 has no hits.
BS14515.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:02 Download gff for
BS14515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17584-PA | 321..1128 | 17..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:37 Download gff for
BS14515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 795..1603 | 16..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:04 Download gff for
BS14515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 795..1603 | 16..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:04 Download gff for
BS14515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843459..12843571 | 712..824 | 100 | -> | Minus |
2R | 12843676..12844058 | 329..711 | 99 | -> | Minus |
2R | 12844121..12844330 | 119..328 | 100 | -> | Minus |
2R | 12844466..12844568 | 16..118 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:37 Download gff for
BS14515.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8730964..8731076 | 712..824 | 100 | -> | Minus |
arm_2R | 8731181..8731563 | 329..711 | 99 | -> | Minus |
arm_2R | 8731626..8731835 | 119..328 | 100 | -> | Minus |
arm_2R | 8731971..8732073 | 16..118 | 99 | | Minus |
BS14515.5prime Sequence
903 bp (785 high quality bases) assembled on 2006-10-13
> BS14515.5prime
GAAGTTATCAGTCGACATGTTTGAAGACATTCAGCTAATCTACATGAATA
TCAAGATATTGCGATTCTGGGCCCTGCTCTATGACAAAAACTTGAGGCGT
TATGTGTGCATTGGACTGGCCTCATTCCACATCTTCACCCAAATCGTCTA
CATGATGAGTACCAATGAAGGACTAACCGGGATAATTCGTAACTCATATA
TGCTCGTCCTTTGGATTAATACGGTGCTGCGAGCTTATCTCTTGCTGGCG
GATCACGACAGATATTTGGCTTTGATCCAAAAACTAACTGAGGCCTATTA
CGATTTACTGAATCTGAACGATTCGTATATATCGGAAATATTGGACCAGG
TGAACAAGGTGGGAAAGTTGATGGCTAGGGGCAATCTGTTCTTTGGCATG
CTCACATCCATGGGATTCGGTCTGTACCCATTGTCCTCCAGCGAAAGAGT
CCTGCCATTTGGCAGCAAAATTCCTGGTCTAAATGAGTACGAGAGTCCGT
ACTATGAGATGTGGTACATCTTTCAGATGCTCATCACCCCGATGGGCTGT
TGCATGTACATTCCGTACACCAGTCTGATTGTGGGCTTGATAATGTTCGG
CATTGTGAGGTGCAAGGCTTTGCAGCATCGCCTCCGCCAGGTGGCGCTTA
AGCATCCGTACGGAGATCGCGATCCCCGTGAACTGAGGGAGGAGATCATA
GCCTGCATACGTTACCAGCAGAGCATTATCGAGTACATGGATCACATAAA
CGAGCTGACCACCATGATGTTCCTATTCGAACTGATGGCCTTTTCGGCGC
TGCTCTGTGCGCTGCTCTTTATGCTGATTATCGTCAGCGGCACCAGTCAG
CTGATAATTGTTTGCATGTACTTTAACATGATTCTGGCCCAAATACTGGC
CCT
BS14515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17584-PA | 1128 | Or49b-RA | 1..887 | 17..903 | 4410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-RA | 1739 | CG17584-RA | 474..1361 | 16..903 | 4425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12843138..12843571 | 16..449 | 2170 | 100 | Plus |
2R | 25286936 | 2R | 12843674..12844060 | 448..834 | 1935 | 100 | Plus |
2R | 25286936 | 2R | 12844121..12844191 | 833..903 | 340 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:48:59 has no hits.
BS14515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:03 Download gff for
BS14515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17584-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:53:11 Download gff for
BS14515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1361 | 2..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:10:53 Download gff for
BS14515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Or49b-RA | 463..1361 | 2..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:10:53 Download gff for
BS14515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12843676..12844058 | 450..832 | 100 | -> | Plus |
2R | 12844121..12844191 | 833..903 | 98 | | Plus |
2R | 12843127..12843571 | 2..449 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:53:11 Download gff for
BS14515.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8730632..8731076 | 2..449 | 99 | -> | Plus |
arm_2R | 8731181..8731563 | 450..832 | 100 | -> | Plus |
arm_2R | 8731626..8731696 | 833..903 | 98 | | Plus |
BS14515.pep Sequence
Translation from 16 to 1143
> BS14515.pep
MFEDIQLIYMNIKILRFWALLYDKNLRRYVCIGLASFHIFTQIVYMMSTN
EGLTGIIRNSYMLVLWINTVLRAYLLLADHDRYLALIQKLTEAYYDLLNL
NDSYISEILDQVNKVGKLMARGNLFFGMLTSMGFGLYPLSSSERVLPFGS
KIPGLNEYESPYYEMWYIFQMLITPMGCCMYIPYTSLIVGLIMFGIVRCK
ALQHRLRQVALKHPYGDRDPRELREEIIACIRYQQSIIEYMDHINELTTM
MFLFELMAFSALLCALLFMLIIVSGTSQLIIVCMYINMILAQILALYWYA
NELREQNLAVATAAYETEWFTFDVPLRKNILFMMMRAQRPAAILLGNIRP
ITLELFQNLLNTTYTFFTVLKRVYG*
BS14515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Or49b-PA | 375 | CG17584-PA | 1..375 | 1..375 | 1939 | 100 | Plus |
Or30a-PA | 377 | CG13106-PA | 18..377 | 12..375 | 764 | 42.2 | Plus |
Or43a-PA | 376 | CG1854-PA | 4..375 | 3..375 | 496 | 30.2 | Plus |
Or67c-PA | 404 | CG14156-PA | 241..401 | 213..374 | 209 | 26.5 | Plus |
Or46a-PA | 381 | CG33478-PA | 38..379 | 12..373 | 192 | 23 | Plus |