Clone Sequence Records
BS14516.3prime Sequence
663 bp (663 high quality bases) assembled on 2006-10-13
> BS14516.3prime
ATGGTCTAGAAAGCTTTCAGTTATCGAAGTATTTGCGGAACTCCTGGCAA
CCAGCCCAGTTTTCCTCCCAACCGGGAGTCAGTTTCTTGGCATTCTCGTA
CCAACGTGCCACATTGGCATACCGCTTGAAATCGAAGCCAGCCACATCGA
AAGTGGAAACGGTGGCCAGAAAGGCAATATCCGCCAAGCTATAATCCCCT
CCAGCGCTGTAGGTCTGCCCCTCCAGGAATGTGTTTAGGAATTCGAAGGC
CACTTCGATCTTCTTGTAGTTCTCCTCATTGGCGGGCTTCTTTAGGAAAA
TCTGCGGATAATAGTACTCGGAGAAGCTCTTATACAGCGTACCCATGTCG
AAGTACAGGCGCTGATTGATCAACGCCTGCTTTTGCACATCCTTGGGGAA
GAGCTTGTCGTCCTTGCCGTACTTCTCCACCAGATAAACCATAATCGCCC
GCGACTCCCACAAAGCAAATCCATGGTCGTGCAGCGTGGGGATCGTGTGC
TGCGGATTGATTTTCAGGTATTCCGGCGTGAATTGCTCCCTAGCTCGGGT
GTTGATAATGGTCTTCTTATCGAACTCCACACCCAGTGCCTTGGCTGTCA
TCAGAACAGAGCGGCAGGGAGCAGATCCGGGTCTATAGTATAAATCCATG
TCGACTGATAACT
BS14516.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18548-PA | 633 | GstD10-RA | 1..633 | 649..17 | 3165 | 100 | Minus |
CG10045-PA | 630 | GstD1-RA | 278..317 | 372..333 | 175 | 97.5 | Minus |
CG10045-PB | 630 | GstD1-RB | 278..317 | 372..333 | 175 | 97.5 | Minus |
CG12242-PA | 651 | GstD5-RA | 211..258 | 436..389 | 165 | 93.7 | Minus |
CG4421-PA | 639 | GstD8-RA | 544..592 | 103..55 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD10-RB | 876 | CG18548-RB | 107..740 | 649..16 | 3170 | 100 | Minus |
GstD10-RA | 852 | CG18548-RA | 83..716 | 649..16 | 3170 | 100 | Minus |
GstD1-RB | 843 | CG10045-RB | 211..714 | 527..24 | 655 | 76.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12364912..12365545 | 16..649 | 3170 | 100 | Plus |
3R | 32079331 | 3R | 12367946..12368449 | 24..527 | 645 | 75.2 | Plus |
3R | 32079331 | 3R | 12373217..12373674 | 511..54 | 400 | 73.5 | Minus |
3R | 32079331 | 3R | 12375900..12376354 | 510..56 | 385 | 72.3 | Minus |
3R | 32079331 | 3R | 12374268..12374743 | 531..56 | 355 | 71.6 | Minus |
3R | 32079331 | 3R | 12372134..12372338 | 510..306 | 320 | 77.1 | Minus |
3R | 32079331 | 3R | 12380504..12380627 | 178..55 | 245 | 79.8 | Minus |
3R | 32079331 | 3R | 12366573..12366775 | 325..527 | 220 | 73.9 | Plus |
3R | 32079331 | 3R | 12377316..12377485 | 502..333 | 205 | 74.7 | Minus |
3R | 32079331 | 3R | 12378699..12378871 | 502..333 | 200 | 75.7 | Minus |
3R | 32079331 | 3R | 12380142..12380359 | 540..323 | 190 | 72.5 | Minus |
3R | 32079331 | 3R | 12372458..12372589 | 186..55 | 180 | 75.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:45:08 has no hits.
BS14516.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:03 Download gff for
BS14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18548-PA | 1..633 | 17..649 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:33 Download gff for
BS14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 61..699 | 16..655 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:33 Download gff for
BS14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 78..716 | 16..655 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:33 Download gff for
BS14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12364912..12365550 | 16..655 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:33 Download gff for
BS14516.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8190634..8191272 | 16..655 | 99 | | Plus |
BS14516.5prime Sequence
663 bp (663 high quality bases) assembled on 2006-10-13
> BS14516.5prime
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCANATACTTCGATAACTGAA
AGCTTTCTAGACC
BS14516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18548-PA | 633 | GstD10-RA | 1..633 | 17..649 | 3146 | 99.8 | Plus |
CG10045-PA | 630 | GstD1-RA | 278..317 | 294..333 | 175 | 97.5 | Plus |
CG10045-PB | 630 | GstD1-RB | 278..317 | 294..333 | 175 | 97.5 | Plus |
CG12242-PA | 651 | GstD5-RA | 211..258 | 230..277 | 165 | 93.7 | Plus |
CG4421-PA | 639 | GstD8-RA | 544..592 | 563..611 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD10-RB | 876 | CG18548-RB | 107..740 | 17..650 | 3159 | 99.8 | Plus |
GstD10-RA | 852 | CG18548-RA | 83..716 | 17..650 | 3159 | 99.8 | Plus |
GstD1-RB | 843 | CG10045-RB | 211..700 | 139..628 | 645 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12364912..12365545 | 650..17 | 3159 | 99.8 | Minus |
3R | 32079331 | 3R | 12367960..12368449 | 628..139 | 635 | 75.3 | Minus |
3R | 32079331 | 3R | 12373217..12373674 | 155..612 | 400 | 73.5 | Plus |
3R | 32079331 | 3R | 12375900..12376354 | 156..610 | 385 | 72.3 | Plus |
3R | 32079331 | 3R | 12374268..12374743 | 135..610 | 355 | 71.6 | Plus |
3R | 32079331 | 3R | 12372134..12372338 | 156..360 | 320 | 77.1 | Plus |
3R | 32079331 | 3R | 12380504..12380627 | 488..611 | 245 | 79.8 | Plus |
3R | 32079331 | 3R | 12366573..12366775 | 341..139 | 220 | 73.9 | Minus |
3R | 32079331 | 3R | 12377316..12377485 | 164..333 | 205 | 74.7 | Plus |
3R | 32079331 | 3R | 12378699..12378871 | 164..333 | 200 | 75.7 | Plus |
3R | 32079331 | 3R | 12380142..12380359 | 126..343 | 190 | 72.5 | Plus |
3R | 32079331 | 3R | 12372458..12372589 | 480..611 | 180 | 75.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:49:28 has no hits.
BS14516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:03 Download gff for
BS14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18548-PA | 1..633 | 17..649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:43 Download gff for
BS14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 61..699 | 11..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:28 Download gff for
BS14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 78..716 | 11..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:28 Download gff for
BS14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12364912..12365550 | 11..650 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:43 Download gff for
BS14516.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8190634..8191272 | 11..650 | 99 | | Minus |
BS14516.complete Sequence
665 bp assembled on 2006-11-01
GenBank Submission: FJ637685
> BS14516.complete
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCAAATACTTCGATAACTGAA
AGCTTTCTAGACCAT
BS14516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD10-RB | 633 | CG18548-PB | 1..633 | 17..649 | 3165 | 100 | Plus |
GstD10-RA | 633 | CG18548-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
GstD1-RB | 630 | CG10045-PB | 123..626 | 139..642 | 645 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD10-RB | 876 | CG18548-RB | 107..740 | 17..650 | 3170 | 100 | Plus |
GstD10-RA | 852 | CG18548-RA | 83..716 | 17..650 | 3170 | 100 | Plus |
GstD1-RB | 843 | CG10045-RB | 211..714 | 139..642 | 645 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12364912..12365545 | 650..17 | 3170 | 100 | Minus |
3R | 32079331 | 3R | 12367946..12368449 | 642..139 | 645 | 75.2 | Minus |
3R | 32079331 | 3R | 12373217..12373674 | 155..612 | 400 | 73.5 | Plus |
3R | 32079331 | 3R | 12375900..12376354 | 156..610 | 385 | 72.3 | Plus |
3R | 32079331 | 3R | 12374268..12374743 | 135..610 | 355 | 71.6 | Plus |
3R | 32079331 | 3R | 12372134..12372338 | 156..360 | 320 | 77.1 | Plus |
3R | 32079331 | 3R | 12380504..12380627 | 488..611 | 245 | 79.8 | Plus |
3R | 32079331 | 3R | 12366573..12366775 | 341..139 | 220 | 73.9 | Minus |
3R | 32079331 | 3R | 12377316..12377485 | 164..333 | 205 | 74.7 | Plus |
3R | 32079331 | 3R | 12378699..12378871 | 164..333 | 200 | 75.7 | Plus |
3R | 32079331 | 3R | 12380142..12380359 | 126..343 | 190 | 72.5 | Plus |
3R | 32079331 | 3R | 12372458..12372589 | 480..611 | 180 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:06:56 has no hits.
BS14516.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:35 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 1..633 | 17..649 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:42 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 61..699 | 11..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:43 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 66..697 | 17..648 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:35 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 61..699 | 11..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:41 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstD10-RA | 83..714 | 17..648 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:41 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12364914..12365545 | 17..648 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:43 Download gff for
BS14516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8190636..8191267 | 17..648 | 100 | | Minus |
BS14516.pep Sequence
Translation from 16 to 648
> BS14516.pep
MDLYYRPGSAPCRSVLMTAKALGVEFDKKTIINTRAREQFTPEYLKINPQ
HTIPTLHDHGFALWESRAIMVYLVEKYGKDDKLFPKDVQKQALINQRLYF
DMGTLYKSFSEYYYPQIFLKKPANEENYKKIEVAFEFLNTFLEGQTYSAG
GDYSLADIAFLATVSTFDVAGFDFKRYANVARWYENAKKLTPGWEENWAG
CQEFRKYFDN*
BS14516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstD10-PB | 210 | CG18548-PB | 1..210 | 1..210 | 1129 | 100 | Plus |
GstD10-PA | 210 | CG18548-PA | 1..210 | 1..210 | 1129 | 100 | Plus |
GstD1-PB | 209 | CG10045-PB | 2..209 | 1..209 | 817 | 71.3 | Plus |
GstD1-PA | 209 | CG10045-PA | 2..209 | 1..209 | 817 | 71.3 | Plus |
GstD5-PA | 216 | CG12242-PA | 1..208 | 1..209 | 731 | 63.2 | Plus |