Clone BS14516 Report

Search the DGRC for BS14516

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptGstD10-RA
Protein status:BS14516.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14516.3prime Sequence

663 bp (663 high quality bases) assembled on 2006-10-13

> BS14516.3prime
ATGGTCTAGAAAGCTTTCAGTTATCGAAGTATTTGCGGAACTCCTGGCAA
CCAGCCCAGTTTTCCTCCCAACCGGGAGTCAGTTTCTTGGCATTCTCGTA
CCAACGTGCCACATTGGCATACCGCTTGAAATCGAAGCCAGCCACATCGA
AAGTGGAAACGGTGGCCAGAAAGGCAATATCCGCCAAGCTATAATCCCCT
CCAGCGCTGTAGGTCTGCCCCTCCAGGAATGTGTTTAGGAATTCGAAGGC
CACTTCGATCTTCTTGTAGTTCTCCTCATTGGCGGGCTTCTTTAGGAAAA
TCTGCGGATAATAGTACTCGGAGAAGCTCTTATACAGCGTACCCATGTCG
AAGTACAGGCGCTGATTGATCAACGCCTGCTTTTGCACATCCTTGGGGAA
GAGCTTGTCGTCCTTGCCGTACTTCTCCACCAGATAAACCATAATCGCCC
GCGACTCCCACAAAGCAAATCCATGGTCGTGCAGCGTGGGGATCGTGTGC
TGCGGATTGATTTTCAGGTATTCCGGCGTGAATTGCTCCCTAGCTCGGGT
GTTGATAATGGTCTTCTTATCGAACTCCACACCCAGTGCCTTGGCTGTCA
TCAGAACAGAGCGGCAGGGAGCAGATCCGGGTCTATAGTATAAATCCATG
TCGACTGATAACT

BS14516.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18548-PA 633 GstD10-RA 1..633 649..17 3165 100 Minus
CG10045-PA 630 GstD1-RA 278..317 372..333 175 97.5 Minus
CG10045-PB 630 GstD1-RB 278..317 372..333 175 97.5 Minus
CG12242-PA 651 GstD5-RA 211..258 436..389 165 93.7 Minus
CG4421-PA 639 GstD8-RA 544..592 103..55 145 91.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..740 649..16 3170 100 Minus
GstD10-RA 852 CG18548-RA 83..716 649..16 3170 100 Minus
GstD1-RB 843 CG10045-RB 211..714 527..24 655 76.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364912..12365545 16..649 3170 100 Plus
3R 32079331 3R 12367946..12368449 24..527 645 75.2 Plus
3R 32079331 3R 12373217..12373674 511..54 400 73.5 Minus
3R 32079331 3R 12375900..12376354 510..56 385 72.3 Minus
3R 32079331 3R 12374268..12374743 531..56 355 71.6 Minus
3R 32079331 3R 12372134..12372338 510..306 320 77.1 Minus
3R 32079331 3R 12380504..12380627 178..55 245 79.8 Minus
3R 32079331 3R 12366573..12366775 325..527 220 73.9 Plus
3R 32079331 3R 12377316..12377485 502..333 205 74.7 Minus
3R 32079331 3R 12378699..12378871 502..333 200 75.7 Minus
3R 32079331 3R 12380142..12380359 540..323 190 72.5 Minus
3R 32079331 3R 12372458..12372589 186..55 180 75.8 Minus
Blast to na_te.dros performed on 2015-02-10 16:45:08 has no hits.

BS14516.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:03 Download gff for BS14516.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18548-PA 1..633 17..649 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:33 Download gff for BS14516.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 16..655 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:33 Download gff for BS14516.3prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 78..716 16..655 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:33 Download gff for BS14516.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12364912..12365550 16..655 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:33 Download gff for BS14516.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190634..8191272 16..655 99   Plus

BS14516.5prime Sequence

663 bp (663 high quality bases) assembled on 2006-10-13

> BS14516.5prime
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCANATACTTCGATAACTGAA
AGCTTTCTAGACC

BS14516.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG18548-PA 633 GstD10-RA 1..633 17..649 3146 99.8 Plus
CG10045-PA 630 GstD1-RA 278..317 294..333 175 97.5 Plus
CG10045-PB 630 GstD1-RB 278..317 294..333 175 97.5 Plus
CG12242-PA 651 GstD5-RA 211..258 230..277 165 93.7 Plus
CG4421-PA 639 GstD8-RA 544..592 563..611 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..740 17..650 3159 99.8 Plus
GstD10-RA 852 CG18548-RA 83..716 17..650 3159 99.8 Plus
GstD1-RB 843 CG10045-RB 211..700 139..628 645 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364912..12365545 650..17 3159 99.8 Minus
3R 32079331 3R 12367960..12368449 628..139 635 75.3 Minus
3R 32079331 3R 12373217..12373674 155..612 400 73.5 Plus
3R 32079331 3R 12375900..12376354 156..610 385 72.3 Plus
3R 32079331 3R 12374268..12374743 135..610 355 71.6 Plus
3R 32079331 3R 12372134..12372338 156..360 320 77.1 Plus
3R 32079331 3R 12380504..12380627 488..611 245 79.8 Plus
3R 32079331 3R 12366573..12366775 341..139 220 73.9 Minus
3R 32079331 3R 12377316..12377485 164..333 205 74.7 Plus
3R 32079331 3R 12378699..12378871 164..333 200 75.7 Plus
3R 32079331 3R 12380142..12380359 126..343 190 72.5 Plus
3R 32079331 3R 12372458..12372589 480..611 180 75.8 Plus
Blast to na_te.dros performed on 2015-01-30 17:49:28 has no hits.

BS14516.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:03 Download gff for BS14516.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18548-PA 1..633 17..649 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:43 Download gff for BS14516.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:28 Download gff for BS14516.5prime
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 78..716 11..650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:28 Download gff for BS14516.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12364912..12365550 11..650 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:43 Download gff for BS14516.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190634..8191272 11..650 99   Minus

BS14516.complete Sequence

665 bp assembled on 2006-11-01

GenBank Submission: FJ637685

> BS14516.complete
GAAGTTATCAGTCGACATGGATTTATACTATAGACCCGGATCTGCTCCCT
GCCGCTCTGTTCTGATGACAGCCAAGGCACTGGGTGTGGAGTTCGATAAG
AAGACCATTATCAACACCCGAGCTAGGGAGCAATTCACGCCGGAATACCT
GAAAATCAATCCGCAGCACACGATCCCCACGCTGCACGACCATGGATTTG
CTTTGTGGGAGTCGCGGGCGATTATGGTTTATCTGGTGGAGAAGTACGGC
AAGGACGACAAGCTCTTCCCCAAGGATGTGCAAAAGCAGGCGTTGATCAA
TCAGCGCCTGTACTTCGACATGGGTACGCTGTATAAGAGCTTCTCCGAGT
ACTATTATCCGCAGATTTTCCTAAAGAAGCCCGCCAATGAGGAGAACTAC
AAGAAGATCGAAGTGGCCTTCGAATTCCTAAACACATTCCTGGAGGGGCA
GACCTACAGCGCTGGAGGGGATTATAGCTTGGCGGATATTGCCTTTCTGG
CCACCGTTTCCACTTTCGATGTGGCTGGCTTCGATTTCAAGCGGTATGCC
AATGTGGCACGTTGGTACGAGAATGCCAAGAAACTGACTCCCGGTTGGGA
GGAAAACTGGGCTGGTTGCCAGGAGTTCCGCAAATACTTCGATAACTGAA
AGCTTTCTAGACCAT

BS14516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 633 CG18548-PB 1..633 17..649 3165 100 Plus
GstD10-RA 633 CG18548-PA 1..633 17..649 3165 100 Plus
GstD1-RB 630 CG10045-PB 123..626 139..642 645 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-RB 876 CG18548-RB 107..740 17..650 3170 100 Plus
GstD10-RA 852 CG18548-RA 83..716 17..650 3170 100 Plus
GstD1-RB 843 CG10045-RB 211..714 139..642 645 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12364912..12365545 650..17 3170 100 Minus
3R 32079331 3R 12367946..12368449 642..139 645 75.2 Minus
3R 32079331 3R 12373217..12373674 155..612 400 73.5 Plus
3R 32079331 3R 12375900..12376354 156..610 385 72.3 Plus
3R 32079331 3R 12374268..12374743 135..610 355 71.6 Plus
3R 32079331 3R 12372134..12372338 156..360 320 77.1 Plus
3R 32079331 3R 12380504..12380627 488..611 245 79.8 Plus
3R 32079331 3R 12366573..12366775 341..139 220 73.9 Minus
3R 32079331 3R 12377316..12377485 164..333 205 74.7 Plus
3R 32079331 3R 12378699..12378871 164..333 200 75.7 Plus
3R 32079331 3R 12380142..12380359 126..343 190 72.5 Plus
3R 32079331 3R 12372458..12372589 480..611 180 75.8 Plus
Blast to na_te.dros performed on 2014-11-27 02:06:56 has no hits.

BS14516.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:35 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 1..633 17..649 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:42 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:43 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 66..697 17..648 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:35 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 61..699 11..650 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:41 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
GstD10-RA 83..714 17..648 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:41 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12364914..12365545 17..648 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:43 Download gff for BS14516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8190636..8191267 17..648 100   Minus

BS14516.pep Sequence

Translation from 16 to 648

> BS14516.pep
MDLYYRPGSAPCRSVLMTAKALGVEFDKKTIINTRAREQFTPEYLKINPQ
HTIPTLHDHGFALWESRAIMVYLVEKYGKDDKLFPKDVQKQALINQRLYF
DMGTLYKSFSEYYYPQIFLKKPANEENYKKIEVAFEFLNTFLEGQTYSAG
GDYSLADIAFLATVSTFDVAGFDFKRYANVARWYENAKKLTPGWEENWAG
CQEFRKYFDN*

BS14516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
GstD10-PB 210 CG18548-PB 1..210 1..210 1129 100 Plus
GstD10-PA 210 CG18548-PA 1..210 1..210 1129 100 Plus
GstD1-PB 209 CG10045-PB 2..209 1..209 817 71.3 Plus
GstD1-PA 209 CG10045-PA 2..209 1..209 817 71.3 Plus
GstD5-PA 216 CG12242-PA 1..208 1..209 731 63.2 Plus