Clone Sequence Records
BS14522.5prime Sequence
486 bp (486 high quality bases) assembled on 2006-10-13
> BS14522.5prime
GAAGTTATCAGTCGACATGGAAATAACACTCGCTCTGATAAAGCCGCACG
TGCTGCGGAATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAG
AACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATC
TGAGCGATTTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAA
CCAGTTTTATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAA
ACCTGCATCCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCG
TGCCGTGTACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCG
ACACTCGCAACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGC
GAGATCAGCATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCA
GGCGAAAAGGGAGGAGGCGTAGAAGCTTTCTAGACC
BS14522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5310-PA | 456 | nmdyn-D6-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmdyn-D6-RA | 864 | CG5310-RA | 74..532 | 14..472 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14584026..14584284 | 214..472 | 1295 | 100 | Plus |
X | 23542271 | X | 14583750..14583952 | 14..216 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:40:25 has no hits.
BS14522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:07 Download gff for
BS14522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5310-PA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:20 Download gff for
BS14522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 65..532 | 2..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:33 Download gff for
BS14522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 65..532 | 2..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:33 Download gff for
BS14522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14583741..14583952 | 2..216 | 97 | -> | Plus |
X | 14584029..14584284 | 217..472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:20 Download gff for
BS14522.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14477774..14477985 | 2..216 | 97 | -> | Plus |
arm_X | 14478062..14478317 | 217..472 | 100 | | Plus |
BS14522.complete Sequence
488 bp assembled on 2006-11-01
GenBank Submission: FJ637686
> BS14522.complete
GAAGTTATCAGTCGACATGGAAATAACACTCGCTCTGATAAAGCCGCACG
TGCTGCGGAATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAG
AACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATC
TGAGCGATTTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAA
CCAGTTTTATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAA
ACCTGCATCCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCG
TGCCGTGTACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCG
ACACTCGCAACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGC
GAGATCAGCATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCA
GGCGAAAAGGGAGGAGGCGTAGAAGCTTTCTAGACCAT
BS14522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmdyn-D6-RA | 456 | CG5310-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmdyn-D6-RA | 864 | CG5310-RA | 74..532 | 14..472 | 2295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14584026..14584284 | 214..472 | 1295 | 100 | Plus |
X | 23542271 | X | 14583750..14583952 | 14..216 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:05 has no hits.
BS14522.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:36 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:43 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 49..516 | 2..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:39 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 77..532 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:36 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 49..516 | 2..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:44 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmdyn-D6-RA | 77..532 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:44 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14583753..14583952 | 17..216 | 100 | -> | Plus |
X | 14584029..14584284 | 217..472 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:39 Download gff for
BS14522.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14477786..14477985 | 17..216 | 100 | -> | Plus |
arm_X | 14478062..14478317 | 217..472 | 100 | | Plus |
BS14522.pep Sequence
Translation from 16 to 471
> BS14522.pep
MEITLALIKPHVLRNTYAMQQIRALISQNFTILDQKEVCITKELSERFYA
EHKGKFFYHRLTSFMNSGPSYALILQSETCIQKWRSLLGPTKVFRAVYSD
PNCIRALYGISDTRNACHGSDSEASALREISILFPEFDAAVGSRQAKREE
A*
BS14522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmdyn-D6-PA | 151 | CG5310-PA | 1..151 | 1..151 | 776 | 100 | Plus |
awd-PE | 153 | CG2210-PE | 6..148 | 2..147 | 156 | 29.5 | Plus |
awd-PD | 168 | CG2210-PD | 21..163 | 2..147 | 156 | 29.5 | Plus |
awd-PC | 168 | CG2210-PC | 21..163 | 2..147 | 156 | 29.5 | Plus |