Clone BS14522 Report

Search the DGRC for BS14522

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptnmdyn-D6-RA
Protein status:BS14522.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14522.5prime Sequence

486 bp (486 high quality bases) assembled on 2006-10-13

> BS14522.5prime
GAAGTTATCAGTCGACATGGAAATAACACTCGCTCTGATAAAGCCGCACG
TGCTGCGGAATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAG
AACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATC
TGAGCGATTTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAA
CCAGTTTTATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAA
ACCTGCATCCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCG
TGCCGTGTACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCG
ACACTCGCAACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGC
GAGATCAGCATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCA
GGCGAAAAGGGAGGAGGCGTAGAAGCTTTCTAGACC

BS14522.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5310-PA 456 nmdyn-D6-RA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-RA 864 CG5310-RA 74..532 14..472 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14584026..14584284 214..472 1295 100 Plus
X 23542271 X 14583750..14583952 14..216 1015 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:40:25 has no hits.

BS14522.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:07 Download gff for BS14522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5310-PA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:20 Download gff for BS14522.5prime
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 65..532 2..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:33 Download gff for BS14522.5prime
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 65..532 2..472 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:33 Download gff for BS14522.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14583741..14583952 2..216 97 -> Plus
X 14584029..14584284 217..472 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:20 Download gff for BS14522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14477774..14477985 2..216 97 -> Plus
arm_X 14478062..14478317 217..472 100   Plus

BS14522.complete Sequence

488 bp assembled on 2006-11-01

GenBank Submission: FJ637686

> BS14522.complete
GAAGTTATCAGTCGACATGGAAATAACACTCGCTCTGATAAAGCCGCACG
TGCTGCGGAATACCTATGCAATGCAGCAGATCCGAGCCCTGATCTCCCAG
AACTTCACCATTCTTGACCAGAAGGAGGTTTGCATTACGAAAGAACTATC
TGAGCGATTTTACGCGGAGCATAAGGGAAAATTCTTCTACCACCGACTAA
CCAGTTTTATGAACAGCGGACCCAGCTACGCCCTGATTCTCCAGTCGGAA
ACCTGCATCCAGAAGTGGCGCAGTCTTCTGGGTCCCACCAAGGTGTTCCG
TGCCGTGTACAGTGATCCCAACTGCATCCGGGCATTGTACGGAATATCCG
ACACTCGCAACGCCTGCCATGGATCCGACAGCGAGGCATCCGCCCTCCGC
GAGATCAGCATCCTGTTCCCGGAGTTTGACGCGGCTGTTGGGAGTCGCCA
GGCGAAAAGGGAGGAGGCGTAGAAGCTTTCTAGACCAT

BS14522.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-RA 456 CG5310-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-RA 864 CG5310-RA 74..532 14..472 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14584026..14584284 214..472 1295 100 Plus
X 23542271 X 14583750..14583952 14..216 1015 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:48:05 has no hits.

BS14522.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:36 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:43 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 49..516 2..472 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:39 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 77..532 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:36 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 49..516 2..472 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:44 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
nmdyn-D6-RA 77..532 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:44 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
X 14583753..14583952 17..216 100 -> Plus
X 14584029..14584284 217..472 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:39 Download gff for BS14522.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14477786..14477985 17..216 100 -> Plus
arm_X 14478062..14478317 217..472 100   Plus

BS14522.pep Sequence

Translation from 16 to 471

> BS14522.pep
MEITLALIKPHVLRNTYAMQQIRALISQNFTILDQKEVCITKELSERFYA
EHKGKFFYHRLTSFMNSGPSYALILQSETCIQKWRSLLGPTKVFRAVYSD
PNCIRALYGISDTRNACHGSDSEASALREISILFPEFDAAVGSRQAKREE
A*

BS14522.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
nmdyn-D6-PA 151 CG5310-PA 1..151 1..151 776 100 Plus
awd-PE 153 CG2210-PE 6..148 2..147 156 29.5 Plus
awd-PD 168 CG2210-PD 21..163 2..147 156 29.5 Plus
awd-PC 168 CG2210-PC 21..163 2..147 156 29.5 Plus