Clone Sequence Records
BS14523.3prime Sequence
765 bp (725 high quality bases) assembled on 2006-10-13
> BS14523.3prime
ATGGTCTAGAAAGCTTTCATCTACTTTTATCCACAAGGAGCACGTTCCTG
GCATCCTCCGCTGTCAGGTCCTTATCGCCCCAGCCCCACAGTTCGTGGCT
ACCGTCGCCAGTGCGGAGCACTCGTCGCTGGATCACGTCGGGAGCCACCG
TCTTCAGGTCGTAGGCCCAGCCGATCTTGGCGAACAAGTCGATGAAGGCC
GTCGTTATATTCAGGGAGTAGCAACCCCATTCGGCCGTCTTGTAGTCCCA
CGGAAACGCGTGATGGTAGTTGTGCCACCCCTCGCCAAAGGTGAAGGCCG
ATACAAAGGCATTCTGGGTAGGATTCATGGTCTTGTCGTATGGGCGATTT
CCGAATTTATGGGCCGCGCTGTTCACCAGCCAGGTCATGTTTAGCTGGAA
GCACCACCTGAACATGGTGGCCACAAACCAAGAGGAGGCCAGCGTCTCAT
TCCAGTAAACCATTGGAATAACGGTGGGCAGAACGAAGCAGGCCAGCGGC
ATGAGGATATAATAGTGCTTTCGTTGGAACATCAAGATGGGATCGGCGCG
CAGGTCGGAGAGATCCAGTCCCCTTCCCTTTTCCTTAATATCCGGATGCT
TTTTGCAGAGCAGCCAGCCCACATGCGAGAAGAAAAATCCCCTGGTGGCG
TTGTGAGGATCTGCATCAGTTTCCGAGTATTTGTGGTGGACGCGATGGTC
ACGGGCCCAATGGTAGACGGCATCCTGAAAGGCGATCGTATTGAAGATGA
CCAGGAGCAGGCGCA
BS14523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5925-PA | 1086 | desat2-RA | 338..1086 | 765..17 | 3745 | 100 | Minus |
CG5887-PA | 1152 | desat1-RA | 412..521 | 754..645 | 300 | 90.9 | Minus |
CG5887-PC | 1152 | desat1-RC | 412..521 | 754..645 | 300 | 90.9 | Minus |
CG5887-PE | 1152 | desat1-RE | 412..521 | 754..645 | 300 | 90.9 | Minus |
CG5887-PB | 1152 | desat1-RB | 412..521 | 754..645 | 300 | 90.9 | Minus |
CG5887-PD | 1152 | desat1-RD | 412..521 | 754..645 | 300 | 90.9 | Minus |
CG5887-PA | 1152 | desat1-RA | 967..1020 | 199..146 | 195 | 94.4 | Minus |
CG5887-PC | 1152 | desat1-RC | 967..1020 | 199..146 | 195 | 94.4 | Minus |
CG5887-PE | 1152 | desat1-RE | 967..1020 | 199..146 | 195 | 94.4 | Minus |
CG5887-PB | 1152 | desat1-RB | 967..1020 | 199..146 | 195 | 94.4 | Minus |
CG5887-PD | 1152 | desat1-RD | 967..1020 | 199..146 | 195 | 94.4 | Minus |
CG7923-PA | 1068 | Fad2-RA | 346..422 | 733..657 | 185 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 511..1259 | 765..17 | 3745 | 100 | Minus |
Desat1-RD | 1934 | CG5887-RD | 519..1127 | 754..146 | 930 | 77.3 | Minus |
Desat1-RB | 1978 | CG5887-RB | 563..1171 | 754..146 | 930 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12437444..12437759 | 332..17 | 1580 | 100 | Minus |
3R | 32079331 | 3R | 12436824..12437071 | 765..518 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 12437189..12437375 | 518..332 | 935 | 100 | Minus |
3R | 32079331 | 3R | 12446079..12446308 | 754..525 | 625 | 84.8 | Minus |
3R | 32079331 | 3R | 12446664..12446809 | 291..146 | 370 | 83.6 | Minus |
3R | 32079331 | 3R | 30186709..30186831 | 612..734 | 270 | 81.3 | Plus |
3L | 28110227 | 3L | 11023884..11023960 | 733..657 | 265 | 89.6 | Minus |
3R | 32079331 | 3R | 12446464..12446562 | 430..332 | 210 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:45:46 has no hits.
BS14523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for
BS14523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5925-PA | 339..1086 | 17..764 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:36 Download gff for
BS14523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 512..1264 | 11..764 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:39 Download gff for
BS14523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 512..1264 | 11..764 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:39 Download gff for
BS14523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12436825..12437070 | 519..764 | 100 | -> | Minus |
3R | 12437189..12437374 | 333..518 | 100 | -> | Minus |
3R | 12437444..12437764 | 11..332 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:36 Download gff for
BS14523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8262547..8262792 | 519..764 | 100 | -> | Minus |
arm_3R | 8262911..8263096 | 333..518 | 100 | -> | Minus |
arm_3R | 8263166..8263486 | 11..332 | 99 | | Minus |
BS14523.5prime Sequence
787 bp (723 high quality bases) assembled on 2006-10-13
> BS14523.5prime
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGGCCATAATTTCGGAAATCGCCCATACGACAAG
BS14523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5925-PA | 1086 | desat2-RA | 1..771 | 17..787 | 3805 | 99.7 | Plus |
CG5887-PA | 1152 | desat1-RA | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PC | 1152 | desat1-RC | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PE | 1152 | desat1-RE | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PB | 1152 | desat1-RB | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PD | 1152 | desat1-RD | 412..521 | 365..474 | 300 | 90.9 | Plus |
CG5887-PA | 1152 | desat1-RA | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PC | 1152 | desat1-RC | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PE | 1152 | desat1-RE | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PB | 1152 | desat1-RB | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG5887-PD | 1152 | desat1-RD | 349..404 | 302..357 | 230 | 96.4 | Plus |
CG7923-PA | 1068 | Fad2-RA | 346..422 | 386..462 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:54:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 170..944 | 13..787 | 3830 | 99.6 | Plus |
Desat1-RD | 1934 | CG5887-RD | 447..922 | 293..768 | 880 | 79.5 | Plus |
Desat1-RB | 1978 | CG5887-RB | 491..966 | 293..768 | 880 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12436733..12437071 | 263..601 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12436417..12436667 | 13..263 | 1240 | 99.6 | Plus |
3R | 32079331 | 3R | 12437189..12437375 | 601..787 | 905 | 98.9 | Plus |
3R | 32079331 | 3R | 12446007..12446308 | 293..594 | 865 | 85.8 | Plus |
3L | 28110227 | 3L | 11023789..11023960 | 291..462 | 275 | 77.3 | Plus |
3R | 32079331 | 3R | 30186709..30186831 | 507..385 | 270 | 81.3 | Minus |
3R | 32079331 | 3R | 12446464..12446562 | 689..787 | 195 | 79.8 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:54:49 has no hits.
BS14523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for
BS14523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5925-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:01 Download gff for
BS14523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..944 | 13..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:03 Download gff for
BS14523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 170..944 | 13..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:03 Download gff for
BS14523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12437189..12437375 | 601..787 | 98 | | Plus |
3R | 12436417..12436667 | 13..263 | 99 | -> | Plus |
3R | 12436734..12437070 | 264..600 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:01 Download gff for
BS14523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8262911..8263097 | 601..787 | 98 | | Plus |
arm_3R | 8262139..8262389 | 13..263 | 99 | -> | Plus |
arm_3R | 8262456..8262792 | 264..600 | 100 | -> | Plus |
BS14523.complete Sequence
1118 bp assembled on 2006-11-01
GenBank Submission: FJ637687
> BS14523.complete
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATACGACAAGACCATGAATCCTA
CCCAGAATGCCTTTGTATCGGCCTTCACCTTTGGCGAGGGGTGGCACAAC
TACCATCACGCGTTTCCGTGGGACTACAAGACGGCCGAATGGGGTTGCTA
CTCCCTGAATATAACGACGGCCTTCATCGACTTGTTCGCCAAGATCGGCT
GGGCCTACGACCTGAAGACGGTGGCTCCCGACGTGATCCAGCGACGAGTG
CTCCGCACTGGCGACGGTAGCCACGAACTGTGGGGCTGGGGCGATAAGGA
CCTGACAGCGGAGGATGCCAGGAACGTGCTCCTTGTGGATAAAAGTAGAT
GAAAGCTTTCTAGACCAT
BS14523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1086 | CG5925-PA | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Desat1-RD | 1152 | CG5887-PD | 340..1020 | 293..973 | 1155 | 78 | Plus |
Desat1-RB | 1152 | CG5887-PB | 340..1020 | 293..973 | 1155 | 78 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-RA | 1357 | CG5925-RA | 170..1259 | 13..1102 | 5435 | 99.9 | Plus |
Desat1-RD | 1934 | CG5887-RD | 447..1127 | 293..973 | 1155 | 78 | Plus |
Desat1-RB | 1978 | CG5887-RB | 491..1171 | 293..973 | 1155 | 78 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12436733..12437071 | 263..601 | 1695 | 100 | Plus |
3R | 32079331 | 3R | 12437444..12437759 | 787..1102 | 1580 | 100 | Plus |
3R | 32079331 | 3R | 12436417..12436667 | 13..263 | 1240 | 99.6 | Plus |
3R | 32079331 | 3R | 12437189..12437375 | 601..787 | 935 | 100 | Plus |
3R | 32079331 | 3R | 12446007..12446308 | 293..594 | 865 | 85.8 | Plus |
3R | 32079331 | 3R | 12446664..12446809 | 828..973 | 370 | 83.6 | Plus |
3L | 28110227 | 3L | 11023789..11023960 | 291..462 | 275 | 77.3 | Plus |
3R | 32079331 | 3R | 30186709..30186831 | 507..385 | 270 | 81.3 | Minus |
3R | 32079331 | 3R | 12446464..12446562 | 689..787 | 210 | 80.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:07:34 has no hits.
BS14523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:37 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 1..1086 | 17..1102 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:45 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..1264 | 13..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:23:51 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 174..1258 | 17..1101 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:37 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
desat2-RA | 170..1264 | 13..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:19 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Desat2-RA | 174..1258 | 17..1101 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:19 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12436734..12437070 | 264..600 | 100 | -> | Plus |
3R | 12437189..12437374 | 601..786 | 100 | -> | Plus |
3R | 12437444..12437758 | 787..1101 | 100 | | Plus |
3R | 12436421..12436667 | 17..263 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:23:51 Download gff for
BS14523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8263166..8263480 | 787..1101 | 100 | | Plus |
arm_3R | 8262143..8262389 | 17..263 | 100 | -> | Plus |
arm_3R | 8262456..8262792 | 264..600 | 100 | -> | Plus |
arm_3R | 8262911..8263096 | 601..786 | 100 | -> | Plus |
BS14523.pep Sequence
Translation from 16 to 1101
> BS14523.pep
MAPYSRIYHQDKSSRETGVLFEDDAQTVDGDLTTDRFQLKRAEKRRLPLV
WRNIILFALVHLAALYGLHSIFTRAKLATTLFAAGLYIIGMLGVTAGAHR
LWAHRTYKAKWPLRLLLVIFNTIAFQDAVYHWARDHRVHHKYSETDADPH
NATRGFFFSHVGWLLCKKHPDIKEKGRGLDLSDLRADPILMFQRKHYYIL
MPLACFVLPTVIPMVYWNETLASSWFVATMFRWCFQLNMTWLVNSAAHKF
GNRPYDKTMNPTQNAFVSAFTFGEGWHNYHHAFPWDYKTAEWGCYSLNIT
TAFIDLFAKIGWAYDLKTVAPDVIQRRVLRTGDGSHELWGWGDKDLTAED
ARNVLLVDKSR*
BS14523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Desat2-PA | 361 | CG5925-PA | 1..361 | 1..361 | 1975 | 100 | Plus |
Desat1-PD | 383 | CG5887-PD | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PB | 383 | CG5887-PB | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PE | 383 | CG5887-PE | 38..380 | 17..359 | 1405 | 71.4 | Plus |
Desat1-PC | 383 | CG5887-PC | 38..380 | 17..359 | 1405 | 71.4 | Plus |