Clone BS14523 Report

Search the DGRC for BS14523

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptDesat2-RA
Protein status:BS14523.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14523.3prime Sequence

765 bp (725 high quality bases) assembled on 2006-10-13

> BS14523.3prime
ATGGTCTAGAAAGCTTTCATCTACTTTTATCCACAAGGAGCACGTTCCTG
GCATCCTCCGCTGTCAGGTCCTTATCGCCCCAGCCCCACAGTTCGTGGCT
ACCGTCGCCAGTGCGGAGCACTCGTCGCTGGATCACGTCGGGAGCCACCG
TCTTCAGGTCGTAGGCCCAGCCGATCTTGGCGAACAAGTCGATGAAGGCC
GTCGTTATATTCAGGGAGTAGCAACCCCATTCGGCCGTCTTGTAGTCCCA
CGGAAACGCGTGATGGTAGTTGTGCCACCCCTCGCCAAAGGTGAAGGCCG
ATACAAAGGCATTCTGGGTAGGATTCATGGTCTTGTCGTATGGGCGATTT
CCGAATTTATGGGCCGCGCTGTTCACCAGCCAGGTCATGTTTAGCTGGAA
GCACCACCTGAACATGGTGGCCACAAACCAAGAGGAGGCCAGCGTCTCAT
TCCAGTAAACCATTGGAATAACGGTGGGCAGAACGAAGCAGGCCAGCGGC
ATGAGGATATAATAGTGCTTTCGTTGGAACATCAAGATGGGATCGGCGCG
CAGGTCGGAGAGATCCAGTCCCCTTCCCTTTTCCTTAATATCCGGATGCT
TTTTGCAGAGCAGCCAGCCCACATGCGAGAAGAAAAATCCCCTGGTGGCG
TTGTGAGGATCTGCATCAGTTTCCGAGTATTTGTGGTGGACGCGATGGTC
ACGGGCCCAATGGTAGACGGCATCCTGAAAGGCGATCGTATTGAAGATGA
CCAGGAGCAGGCGCA

BS14523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5925-PA 1086 desat2-RA 338..1086 765..17 3745 100 Minus
CG5887-PA 1152 desat1-RA 412..521 754..645 300 90.9 Minus
CG5887-PC 1152 desat1-RC 412..521 754..645 300 90.9 Minus
CG5887-PE 1152 desat1-RE 412..521 754..645 300 90.9 Minus
CG5887-PB 1152 desat1-RB 412..521 754..645 300 90.9 Minus
CG5887-PD 1152 desat1-RD 412..521 754..645 300 90.9 Minus
CG5887-PA 1152 desat1-RA 967..1020 199..146 195 94.4 Minus
CG5887-PC 1152 desat1-RC 967..1020 199..146 195 94.4 Minus
CG5887-PE 1152 desat1-RE 967..1020 199..146 195 94.4 Minus
CG5887-PB 1152 desat1-RB 967..1020 199..146 195 94.4 Minus
CG5887-PD 1152 desat1-RD 967..1020 199..146 195 94.4 Minus
CG7923-PA 1068 Fad2-RA 346..422 733..657 185 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 511..1259 765..17 3745 100 Minus
Desat1-RD 1934 CG5887-RD 519..1127 754..146 930 77.3 Minus
Desat1-RB 1978 CG5887-RB 563..1171 754..146 930 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12437444..12437759 332..17 1580 100 Minus
3R 32079331 3R 12436824..12437071 765..518 1240 100 Minus
3R 32079331 3R 12437189..12437375 518..332 935 100 Minus
3R 32079331 3R 12446079..12446308 754..525 625 84.8 Minus
3R 32079331 3R 12446664..12446809 291..146 370 83.6 Minus
3R 32079331 3R 30186709..30186831 612..734 270 81.3 Plus
3L 28110227 3L 11023884..11023960 733..657 265 89.6 Minus
3R 32079331 3R 12446464..12446562 430..332 210 80.8 Minus
Blast to na_te.dros performed on 2015-02-10 16:45:46 has no hits.

BS14523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for BS14523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5925-PA 339..1086 17..764 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:36 Download gff for BS14523.3prime
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 512..1264 11..764 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:39 Download gff for BS14523.3prime
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 512..1264 11..764 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:39 Download gff for BS14523.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12436825..12437070 519..764 100 -> Minus
3R 12437189..12437374 333..518 100 -> Minus
3R 12437444..12437764 11..332 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:36 Download gff for BS14523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8262547..8262792 519..764 100 -> Minus
arm_3R 8262911..8263096 333..518 100 -> Minus
arm_3R 8263166..8263486 11..332 99   Minus

BS14523.5prime Sequence

787 bp (723 high quality bases) assembled on 2006-10-13

> BS14523.5prime
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGGCCATAATTTCGGAAATCGCCCATACGACAAG

BS14523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5925-PA 1086 desat2-RA 1..771 17..787 3805 99.7 Plus
CG5887-PA 1152 desat1-RA 412..521 365..474 300 90.9 Plus
CG5887-PC 1152 desat1-RC 412..521 365..474 300 90.9 Plus
CG5887-PE 1152 desat1-RE 412..521 365..474 300 90.9 Plus
CG5887-PB 1152 desat1-RB 412..521 365..474 300 90.9 Plus
CG5887-PD 1152 desat1-RD 412..521 365..474 300 90.9 Plus
CG5887-PA 1152 desat1-RA 349..404 302..357 230 96.4 Plus
CG5887-PC 1152 desat1-RC 349..404 302..357 230 96.4 Plus
CG5887-PE 1152 desat1-RE 349..404 302..357 230 96.4 Plus
CG5887-PB 1152 desat1-RB 349..404 302..357 230 96.4 Plus
CG5887-PD 1152 desat1-RD 349..404 302..357 230 96.4 Plus
CG7923-PA 1068 Fad2-RA 346..422 386..462 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 170..944 13..787 3830 99.6 Plus
Desat1-RD 1934 CG5887-RD 447..922 293..768 880 79.5 Plus
Desat1-RB 1978 CG5887-RB 491..966 293..768 880 79.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12436733..12437071 263..601 1695 100 Plus
3R 32079331 3R 12436417..12436667 13..263 1240 99.6 Plus
3R 32079331 3R 12437189..12437375 601..787 905 98.9 Plus
3R 32079331 3R 12446007..12446308 293..594 865 85.8 Plus
3L 28110227 3L 11023789..11023960 291..462 275 77.3 Plus
3R 32079331 3R 30186709..30186831 507..385 270 81.3 Minus
3R 32079331 3R 12446464..12446562 689..787 195 79.8 Plus
Blast to na_te.dros performed on 2015-02-08 11:54:49 has no hits.

BS14523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for BS14523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5925-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:01 Download gff for BS14523.5prime
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..944 13..787 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:03 Download gff for BS14523.5prime
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 170..944 13..787 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:03 Download gff for BS14523.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12437189..12437375 601..787 98   Plus
3R 12436417..12436667 13..263 99 -> Plus
3R 12436734..12437070 264..600 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:01 Download gff for BS14523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8262911..8263097 601..787 98   Plus
arm_3R 8262139..8262389 13..263 99 -> Plus
arm_3R 8262456..8262792 264..600 100 -> Plus

BS14523.complete Sequence

1118 bp assembled on 2006-11-01

GenBank Submission: FJ637687

> BS14523.complete
GAAGTTATCAGTCGACATGGCGCCCTACTCAAGGATATACCATCAGGATA
AGTCCTCCAGAGAAACGGGTGTCCTTTTCGAGGACGATGCGCAAACAGTC
GACGGTGACCTGACCACCGACAGATTCCAGTTGAAACGAGCTGAGAAGCG
TCGGCTACCCCTAGTCTGGCGGAATATAATCCTGTTCGCATTGGTCCACC
TGGCTGCTCTATATGGCCTGCACTCCATATTCACAAGGGCGAAACTGGCA
ACCACACTTTTCGCTGCCGGATTGTATATCATTGGCATGCTGGGCGTTAC
AGCCGGTGCCCATCGTCTATGGGCGCATCGCACCTACAAGGCCAAGTGGC
CCCTGCGCCTGCTCCTGGTCATCTTCAATACGATCGCCTTTCAGGATGCC
GTCTACCATTGGGCCCGTGACCATCGCGTCCACCACAAATACTCGGAAAC
TGATGCAGATCCTCACAACGCCACCAGGGGATTTTTCTTCTCGCATGTGG
GCTGGCTGCTCTGCAAAAAGCATCCGGATATTAAGGAAAAGGGAAGGGGA
CTGGATCTCTCCGACCTGCGCGCCGATCCCATCTTGATGTTCCAACGAAA
GCACTATTATATCCTCATGCCGCTGGCCTGCTTCGTTCTGCCCACCGTTA
TTCCAATGGTTTACTGGAATGAGACGCTGGCCTCCTCTTGGTTTGTGGCC
ACCATGTTCAGGTGGTGCTTCCAGCTAAACATGACCTGGCTGGTGAACAG
CGCGGCCCATAAATTCGGAAATCGCCCATACGACAAGACCATGAATCCTA
CCCAGAATGCCTTTGTATCGGCCTTCACCTTTGGCGAGGGGTGGCACAAC
TACCATCACGCGTTTCCGTGGGACTACAAGACGGCCGAATGGGGTTGCTA
CTCCCTGAATATAACGACGGCCTTCATCGACTTGTTCGCCAAGATCGGCT
GGGCCTACGACCTGAAGACGGTGGCTCCCGACGTGATCCAGCGACGAGTG
CTCCGCACTGGCGACGGTAGCCACGAACTGTGGGGCTGGGGCGATAAGGA
CCTGACAGCGGAGGATGCCAGGAACGTGCTCCTTGTGGATAAAAGTAGAT
GAAAGCTTTCTAGACCAT

BS14523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1086 CG5925-PA 1..1086 17..1102 5430 100 Plus
Desat1-RD 1152 CG5887-PD 340..1020 293..973 1155 78 Plus
Desat1-RB 1152 CG5887-PB 340..1020 293..973 1155 78 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-RA 1357 CG5925-RA 170..1259 13..1102 5435 99.9 Plus
Desat1-RD 1934 CG5887-RD 447..1127 293..973 1155 78 Plus
Desat1-RB 1978 CG5887-RB 491..1171 293..973 1155 78 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12436733..12437071 263..601 1695 100 Plus
3R 32079331 3R 12437444..12437759 787..1102 1580 100 Plus
3R 32079331 3R 12436417..12436667 13..263 1240 99.6 Plus
3R 32079331 3R 12437189..12437375 601..787 935 100 Plus
3R 32079331 3R 12446007..12446308 293..594 865 85.8 Plus
3R 32079331 3R 12446664..12446809 828..973 370 83.6 Plus
3L 28110227 3L 11023789..11023960 291..462 275 77.3 Plus
3R 32079331 3R 30186709..30186831 507..385 270 81.3 Minus
3R 32079331 3R 12446464..12446562 689..787 210 80.8 Plus
Blast to na_te.dros performed on 2014-11-27 11:07:34 has no hits.

BS14523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:37 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 1..1086 17..1102 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:45 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..1264 13..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:23:51 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 174..1258 17..1101 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:37 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
desat2-RA 170..1264 13..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:19 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
Desat2-RA 174..1258 17..1101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:19 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12436734..12437070 264..600 100 -> Plus
3R 12437189..12437374 601..786 100 -> Plus
3R 12437444..12437758 787..1101 100   Plus
3R 12436421..12436667 17..263 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:23:51 Download gff for BS14523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8263166..8263480 787..1101 100   Plus
arm_3R 8262143..8262389 17..263 100 -> Plus
arm_3R 8262456..8262792 264..600 100 -> Plus
arm_3R 8262911..8263096 601..786 100 -> Plus

BS14523.pep Sequence

Translation from 16 to 1101

> BS14523.pep
MAPYSRIYHQDKSSRETGVLFEDDAQTVDGDLTTDRFQLKRAEKRRLPLV
WRNIILFALVHLAALYGLHSIFTRAKLATTLFAAGLYIIGMLGVTAGAHR
LWAHRTYKAKWPLRLLLVIFNTIAFQDAVYHWARDHRVHHKYSETDADPH
NATRGFFFSHVGWLLCKKHPDIKEKGRGLDLSDLRADPILMFQRKHYYIL
MPLACFVLPTVIPMVYWNETLASSWFVATMFRWCFQLNMTWLVNSAAHKF
GNRPYDKTMNPTQNAFVSAFTFGEGWHNYHHAFPWDYKTAEWGCYSLNIT
TAFIDLFAKIGWAYDLKTVAPDVIQRRVLRTGDGSHELWGWGDKDLTAED
ARNVLLVDKSR*

BS14523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:53
Subject Length Description Subject Range Query Range Score Percent Strand
Desat2-PA 361 CG5925-PA 1..361 1..361 1975 100 Plus
Desat1-PD 383 CG5887-PD 38..380 17..359 1405 71.4 Plus
Desat1-PB 383 CG5887-PB 38..380 17..359 1405 71.4 Plus
Desat1-PE 383 CG5887-PE 38..380 17..359 1405 71.4 Plus
Desat1-PC 383 CG5887-PC 38..380 17..359 1405 71.4 Plus