Clone BS14524 Report

Search the DGRC for BS14524

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptAttD-RA
Protein status:BS14524.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14524.5prime Sequence

576 bp (576 high quality bases) assembled on 2006-10-13

> BS14524.5prime
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTTAAAAGCTTTCTAGACC

BS14524.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7629-PA 546 AttD-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..613 17..573 2740 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625957 178..573 1935 99.2 Plus
3R 32079331 3R 17625324..17625484 17..177 805 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:32:20 has no hits.

BS14524.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:09 Download gff for BS14524.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7629-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:39 Download gff for BS14524.5prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:32 Download gff for BS14524.5prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:32 Download gff for BS14524.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17625324..17625484 17..177 100 -> Plus
3R 17625562..17625957 178..573 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:39 Download gff for BS14524.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 17..177 100 -> Plus
arm_3R 13451284..13451679 178..573 99   Plus

BS14524.3prime Sequence

576 bp (576 high quality bases) assembled on 2006-10-13

> BS14524.3prime
ATGGTCTAGAAAGCTTTTAAAAATTATATCGCAAGTTAACTCCGGTGCCG
AAATCGGACTTGCCGCGCATCGGTCCCCTGAGGTGATGATTGGCACTTCC
GGTGGCGTTGAGGTTGAGATTGCCACTTGGAGAGGTATACAGATTTGCTG
TGCCAGAAGCCTGGACGGCGGTCATGCCGAACTGAGGAACCCTAGTGACC
CCCACTGCCGCCTGGTGACCCGTTCCAGTTTGCAAATTGAGTCCTCCGCC
AAACTGATCGTGCGATCGGCTATGACTGTGAAATGCAGTGGCATTCAGAG
CGGCGTTATTGCTCTGGAAGAGATTGGCTTGGGCTGCGGCAGTGGTAGTG
CTGCCCACGCCCTCGATGTGGCCATGCTGCAGTGAGAGTGCATGACCATT
GGCGTTGACCGCTCCATAAACTCCCTTGGTGACCGGACCCCCAGCGCCTG
GAGTGGAGGCGAATACTCCGGCTCGAGCATTGGCAAGATCATCACCGACC
CTTACTCCGCATTGGGCGGTTGCCGCTCCGCTCTTTGGGTTTCCTGAAGC
CTGACATTCCATGTCGACTGATAACT

BS14524.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7629-PA 546 AttD-RA 1..546 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..613 562..6 2740 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625957 401..6 1935 99.2 Minus
3R 32079331 3R 17625324..17625484 562..402 805 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:55:01 has no hits.

BS14524.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for BS14524.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7629-PA 1..546 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:04 Download gff for BS14524.3prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 6..562 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:05 Download gff for BS14524.3prime
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 6..562 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:05 Download gff for BS14524.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17625324..17625484 402..562 100 -> Minus
3R 17625562..17625957 6..401 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:04 Download gff for BS14524.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 402..562 100 -> Minus
arm_3R 13451284..13451679 6..401 99   Minus

BS14524.complete Sequence

578 bp assembled on 2006-11-01

GenBank Submission: FJ637688

> BS14524.complete
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTTAAAAGCTTTCTAGACCAT

BS14524.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 546 CG7629-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-RA 742 CG7629-RA 57..613 17..573 2740 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17625562..17625957 178..573 1935 99.2 Plus
3R 32079331 3R 17625324..17625484 17..177 805 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:55:22 has no hits.

BS14524.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:38 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:47 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:20 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..600 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:39 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..613 17..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:31 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
AttD-RA 57..600 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:31 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17625562..17625944 178..560 100   Plus
3R 17625324..17625484 17..177 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:20 Download gff for BS14524.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13451046..13451206 17..177 100 -> Plus
arm_3R 13451284..13451666 178..560 100   Plus

BS14524.pep Sequence

Translation from 16 to 561

> BS14524.pep
MECQASGNPKSGAATAQCGVRVGDDLANARAGVFASTPGAGGPVTKGVYG
AVNANGHALSLQHGHIEGVGSTTTAAAQANLFQSNNAALNATAFHSHSRS
HDQFGGGLNLQTGTGHQAAVGVTRVPQFGMTAVQASGTANLYTSPSGNLN
LNATGSANHHLRGPMRGKSDFGTGVNLRYNF*

BS14524.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
AttD-PA 181 CG7629-PA 1..181 1..181 947 100 Plus
AttA-PA 221 CG10146-PA 39..220 6..181 196 33.3 Plus
AttB-PB 218 CG18372-PB 36..217 6..181 194 32.8 Plus
AttB-PA 218 CG18372-PA 36..217 6..181 194 32.8 Plus
AttC-PB 241 CG4740-PB 56..240 6..181 175 30.1 Plus