Clone Sequence Records
BS14524.5prime Sequence
576 bp (576 high quality bases) assembled on 2006-10-13
> BS14524.5prime
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTTAAAAGCTTTCTAGACC
BS14524.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7629-PA | 546 | AttD-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..613 | 17..573 | 2740 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625957 | 178..573 | 1935 | 99.2 | Plus |
3R | 32079331 | 3R | 17625324..17625484 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:32:20 has no hits.
BS14524.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:09 Download gff for
BS14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7629-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:39 Download gff for
BS14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:32 Download gff for
BS14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:32 Download gff for
BS14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625324..17625484 | 17..177 | 100 | -> | Plus |
3R | 17625562..17625957 | 178..573 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:39 Download gff for
BS14524.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 17..177 | 100 | -> | Plus |
arm_3R | 13451284..13451679 | 178..573 | 99 | | Plus |
BS14524.3prime Sequence
576 bp (576 high quality bases) assembled on 2006-10-13
> BS14524.3prime
ATGGTCTAGAAAGCTTTTAAAAATTATATCGCAAGTTAACTCCGGTGCCG
AAATCGGACTTGCCGCGCATCGGTCCCCTGAGGTGATGATTGGCACTTCC
GGTGGCGTTGAGGTTGAGATTGCCACTTGGAGAGGTATACAGATTTGCTG
TGCCAGAAGCCTGGACGGCGGTCATGCCGAACTGAGGAACCCTAGTGACC
CCCACTGCCGCCTGGTGACCCGTTCCAGTTTGCAAATTGAGTCCTCCGCC
AAACTGATCGTGCGATCGGCTATGACTGTGAAATGCAGTGGCATTCAGAG
CGGCGTTATTGCTCTGGAAGAGATTGGCTTGGGCTGCGGCAGTGGTAGTG
CTGCCCACGCCCTCGATGTGGCCATGCTGCAGTGAGAGTGCATGACCATT
GGCGTTGACCGCTCCATAAACTCCCTTGGTGACCGGACCCCCAGCGCCTG
GAGTGGAGGCGAATACTCCGGCTCGAGCATTGGCAAGATCATCACCGACC
CTTACTCCGCATTGGGCGGTTGCCGCTCCGCTCTTTGGGTTTCCTGAAGC
CTGACATTCCATGTCGACTGATAACT
BS14524.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7629-PA | 546 | AttD-RA | 1..546 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..613 | 562..6 | 2740 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625957 | 401..6 | 1935 | 99.2 | Minus |
3R | 32079331 | 3R | 17625324..17625484 | 562..402 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:55:01 has no hits.
BS14524.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:08 Download gff for
BS14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7629-PA | 1..546 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:04 Download gff for
BS14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 6..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:05 Download gff for
BS14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 6..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:05 Download gff for
BS14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625324..17625484 | 402..562 | 100 | -> | Minus |
3R | 17625562..17625957 | 6..401 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:04 Download gff for
BS14524.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 402..562 | 100 | -> | Minus |
arm_3R | 13451284..13451679 | 6..401 | 99 | | Minus |
BS14524.complete Sequence
578 bp assembled on 2006-11-01
GenBank Submission: FJ637688
> BS14524.complete
GAAGTTATCAGTCGACATGGAATGTCAGGCTTCAGGAAACCCAAAGAGCG
GAGCGGCAACCGCCCAATGCGGAGTAAGGGTCGGTGATGATCTTGCCAAT
GCTCGAGCCGGAGTATTCGCCTCCACTCCAGGCGCTGGGGGTCCGGTCAC
CAAGGGAGTTTATGGAGCGGTCAACGCCAATGGTCATGCACTCTCACTGC
AGCATGGCCACATCGAGGGCGTGGGCAGCACTACCACTGCCGCAGCCCAA
GCCAATCTCTTCCAGAGCAATAACGCCGCTCTGAATGCCACTGCATTTCA
CAGTCATAGCCGATCGCACGATCAGTTTGGCGGAGGACTCAATTTGCAAA
CTGGAACGGGTCACCAGGCGGCAGTGGGGGTCACTAGGGTTCCTCAGTTC
GGCATGACCGCCGTCCAGGCTTCTGGCACAGCAAATCTGTATACCTCTCC
AAGTGGCAATCTCAACCTCAACGCCACCGGAAGTGCCAATCATCACCTCA
GGGGACCGATGCGCGGCAAGTCCGATTTCGGCACCGGAGTTAACTTGCGA
TATAATTTTTAAAAGCTTTCTAGACCAT
BS14524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 546 | CG7629-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-RA | 742 | CG7629-RA | 57..613 | 17..573 | 2740 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17625562..17625957 | 178..573 | 1935 | 99.2 | Plus |
3R | 32079331 | 3R | 17625324..17625484 | 17..177 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:55:22 has no hits.
BS14524.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:38 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:47 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:20 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..600 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:39 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..613 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:31 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AttD-RA | 57..600 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:31 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17625562..17625944 | 178..560 | 100 | | Plus |
3R | 17625324..17625484 | 17..177 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:20 Download gff for
BS14524.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13451046..13451206 | 17..177 | 100 | -> | Plus |
arm_3R | 13451284..13451666 | 178..560 | 100 | | Plus |
BS14524.pep Sequence
Translation from 16 to 561
> BS14524.pep
MECQASGNPKSGAATAQCGVRVGDDLANARAGVFASTPGAGGPVTKGVYG
AVNANGHALSLQHGHIEGVGSTTTAAAQANLFQSNNAALNATAFHSHSRS
HDQFGGGLNLQTGTGHQAAVGVTRVPQFGMTAVQASGTANLYTSPSGNLN
LNATGSANHHLRGPMRGKSDFGTGVNLRYNF*
BS14524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AttD-PA | 181 | CG7629-PA | 1..181 | 1..181 | 947 | 100 | Plus |
AttA-PA | 221 | CG10146-PA | 39..220 | 6..181 | 196 | 33.3 | Plus |
AttB-PB | 218 | CG18372-PB | 36..217 | 6..181 | 194 | 32.8 | Plus |
AttB-PA | 218 | CG18372-PA | 36..217 | 6..181 | 194 | 32.8 | Plus |
AttC-PB | 241 | CG4740-PB | 56..240 | 6..181 | 175 | 30.1 | Plus |