Clone BS14525 Report

Search the DGRC for BS14525

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptlush-RA
Protein status:BS14525.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14525.3prime Sequence

492 bp (492 high quality bases) assembled on 2006-10-13

> BS14525.3prime
ATGGTCTAGAAAGCTTTTAAGGCCACATGAACTGCCCATCGGCGTTTTCA
GAGAAGCACTTGGCCGTCTGGTAGACCCTCTCGCAAGATTCCTTAAATTG
TTTATGCGTATCCCGACAAGCTTCAACGGATTTCCTGGACATCTCCATCA
TTTCCGGGGGAACCAGATGCGGAAGTTGGGCCAGCGCCTTGGGAGCGTTG
AACTCCCCCTTTTTGTTCACAGTGCCCGCCATCAAGGACACACACTTTGT
GTAGCACATAAGATCCTGCGATGGCGGAAAGTTGAAATCACCCACGCGAA
GCCGATCGAGATCTTCTGTTTTGAGCTTAAACTTCGGCGCACAGCCACTG
CGGATCATGTCTAGCGAGGTCAAGAACTGCTCCATCGTCATGGCAACTGC
AGGATCGGGTAGCAGGAGTACCAGCACTTGCAGGACGATCGCGAAAACAG
CGGAAGAGCGTCGTTTCCAATGCTTCATGTCGACTGATAACT

BS14525.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8807-PA 462 lush-RA 1..462 478..17 2285 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..675 479..15 2310 99.8 Minus
lush-RA 963 CG8807-RA 224..688 479..15 2310 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 257..479 1115 100 Plus
3L 28110227 3L 19604820..19604975 102..257 750 98.7 Plus
3L 28110227 3L 19604673..19604763 15..105 455 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:45:57 has no hits.

BS14525.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:10 Download gff for BS14525.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8807-PA 1..462 17..478 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:57 Download gff for BS14525.3prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 5..487 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:23 Download gff for BS14525.3prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 5..487 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:23 Download gff for BS14525.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19604662..19604763 5..105 96 <- Plus
3L 19604824..19604974 106..256 99 <- Plus
3L 19605030..19605260 257..487 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:57 Download gff for BS14525.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597762..19597863 5..105 96 <- Plus
arm_3L 19597924..19598074 106..256 99 <- Plus
arm_3L 19598130..19598360 257..487 98   Plus

BS14525.5prime Sequence

492 bp (492 high quality bases) assembled on 2006-10-13

> BS14525.5prime
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTTAAAAGCTTTCTAGACC

BS14525.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8807-PA 462 lush-RA 1..462 17..478 2285 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..675 16..480 2310 99.8 Plus
lush-RA 963 CG8807-RA 224..688 16..480 2310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 238..16 1115 100 Minus
3L 28110227 3L 19604820..19604975 393..238 750 98.7 Minus
3L 28110227 3L 19604673..19604763 480..390 455 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:55:28 has no hits.

BS14525.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:10 Download gff for BS14525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8807-PA 1..462 17..478 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:08 Download gff for BS14525.5prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 8..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:09 Download gff for BS14525.5prime
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 8..490 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:09 Download gff for BS14525.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19604662..19604763 390..490 96 <- Minus
3L 19604824..19604974 239..389 99 <- Minus
3L 19605030..19605260 8..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:08 Download gff for BS14525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597924..19598074 239..389 99 <- Minus
arm_3L 19598130..19598360 8..238 98   Minus
arm_3L 19597762..19597863 390..490 96 <- Minus

BS14525.complete Sequence

494 bp assembled on 2006-11-01

GenBank Submission: FJ637689

> BS14525.complete
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTTAAAAGCTTTCTAGACCAT

BS14525.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 462 CG8807-PB 1..462 17..478 2295 99.8 Plus
lush-RA 462 CG8807-PA 1..462 17..478 2295 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:53
Subject Length Description Subject Range Query Range Score Percent Strand
lush-RB 940 CG8807-RB 211..675 16..480 2310 99.8 Plus
lush-RA 963 CG8807-RA 224..688 16..480 2310 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19605030..19605252 238..16 1115 100 Minus
3L 28110227 3L 19604820..19604975 393..238 750 98.7 Minus
3L 28110227 3L 19604673..19604763 480..390 455 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:22:51 has no hits.

BS14525.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:40 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 1..462 17..478 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:48 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 8..490 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:28 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 225..684 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:40 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 216..699 8..490 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:40 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
lush-RA 225..684 17..476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:40 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19604677..19604763 390..476 100 <- Minus
3L 19604824..19604974 239..389 99 <- Minus
3L 19605030..19605251 17..238 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:28 Download gff for BS14525.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19597777..19597863 390..476 100 <- Minus
arm_3L 19597924..19598074 239..389 99 <- Minus
arm_3L 19598130..19598351 17..238 100   Minus

BS14525.pep Sequence

Translation from 16 to 477

> BS14525.pep
MKHWKRRSSAVFAIVLQVLVLLLPDPAVAMTMEQFLTSLDMIRSGCAPKF
KLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALA
QLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQF
MWP*

BS14525.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
lush-PB 153 CG8807-PB 1..153 1..153 810 100 Plus
lush-PA 153 CG8807-PA 1..153 1..153 810 100 Plus
Obp19a-PC 146 CG11748-PC 17..139 23..145 148 28.6 Plus