Clone Sequence Records
BS14525.3prime Sequence
492 bp (492 high quality bases) assembled on 2006-10-13
> BS14525.3prime
ATGGTCTAGAAAGCTTTTAAGGCCACATGAACTGCCCATCGGCGTTTTCA
GAGAAGCACTTGGCCGTCTGGTAGACCCTCTCGCAAGATTCCTTAAATTG
TTTATGCGTATCCCGACAAGCTTCAACGGATTTCCTGGACATCTCCATCA
TTTCCGGGGGAACCAGATGCGGAAGTTGGGCCAGCGCCTTGGGAGCGTTG
AACTCCCCCTTTTTGTTCACAGTGCCCGCCATCAAGGACACACACTTTGT
GTAGCACATAAGATCCTGCGATGGCGGAAAGTTGAAATCACCCACGCGAA
GCCGATCGAGATCTTCTGTTTTGAGCTTAAACTTCGGCGCACAGCCACTG
CGGATCATGTCTAGCGAGGTCAAGAACTGCTCCATCGTCATGGCAACTGC
AGGATCGGGTAGCAGGAGTACCAGCACTTGCAGGACGATCGCGAAAACAG
CGGAAGAGCGTCGTTTCCAATGCTTCATGTCGACTGATAACT
BS14525.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8807-PA | 462 | lush-RA | 1..462 | 478..17 | 2285 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..675 | 479..15 | 2310 | 99.8 | Minus |
lush-RA | 963 | CG8807-RA | 224..688 | 479..15 | 2310 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 257..479 | 1115 | 100 | Plus |
3L | 28110227 | 3L | 19604820..19604975 | 102..257 | 750 | 98.7 | Plus |
3L | 28110227 | 3L | 19604673..19604763 | 15..105 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:45:57 has no hits.
BS14525.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:10 Download gff for
BS14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8807-PA | 1..462 | 17..478 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:57 Download gff for
BS14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 5..487 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:23 Download gff for
BS14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 5..487 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:23 Download gff for
BS14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604662..19604763 | 5..105 | 96 | <- | Plus |
3L | 19604824..19604974 | 106..256 | 99 | <- | Plus |
3L | 19605030..19605260 | 257..487 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:57 Download gff for
BS14525.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597762..19597863 | 5..105 | 96 | <- | Plus |
arm_3L | 19597924..19598074 | 106..256 | 99 | <- | Plus |
arm_3L | 19598130..19598360 | 257..487 | 98 | | Plus |
BS14525.5prime Sequence
492 bp (492 high quality bases) assembled on 2006-10-13
> BS14525.5prime
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTTAAAAGCTTTCTAGACC
BS14525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8807-PA | 462 | lush-RA | 1..462 | 17..478 | 2285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..675 | 16..480 | 2310 | 99.8 | Plus |
lush-RA | 963 | CG8807-RA | 224..688 | 16..480 | 2310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 238..16 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 19604820..19604975 | 393..238 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 19604673..19604763 | 480..390 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:55:28 has no hits.
BS14525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:10 Download gff for
BS14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8807-PA | 1..462 | 17..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:08 Download gff for
BS14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 8..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:09 Download gff for
BS14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 8..490 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:09 Download gff for
BS14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604662..19604763 | 390..490 | 96 | <- | Minus |
3L | 19604824..19604974 | 239..389 | 99 | <- | Minus |
3L | 19605030..19605260 | 8..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:08 Download gff for
BS14525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597924..19598074 | 239..389 | 99 | <- | Minus |
arm_3L | 19598130..19598360 | 8..238 | 98 | | Minus |
arm_3L | 19597762..19597863 | 390..490 | 96 | <- | Minus |
BS14525.complete Sequence
494 bp assembled on 2006-11-01
GenBank Submission: FJ637689
> BS14525.complete
GAAGTTATCAGTCGACATGAAGCATTGGAAACGACGCTCTTCCGCTGTTT
TCGCGATCGTCCTGCAAGTGCTGGTACTCCTGCTACCCGATCCTGCAGTT
GCCATGACGATGGAGCAGTTCTTGACCTCGCTAGACATGATCCGCAGTGG
CTGTGCGCCGAAGTTTAAGCTCAAAACAGAAGATCTCGATCGGCTTCGCG
TGGGTGATTTCAACTTTCCGCCATCGCAGGATCTTATGTGCTACACAAAG
TGTGTGTCCTTGATGGCGGGCACTGTGAACAAAAAGGGGGAGTTCAACGC
TCCCAAGGCGCTGGCCCAACTTCCGCATCTGGTTCCCCCGGAAATGATGG
AGATGTCCAGGAAATCCGTTGAAGCTTGTCGGGATACGCATAAACAATTT
AAGGAATCTTGCGAGAGGGTCTACCAGACGGCCAAGTGCTTCTCTGAAAA
CGCCGATGGGCAGTTCATGTGGCCTTAAAAGCTTTCTAGACCAT
BS14525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 462 | CG8807-PB | 1..462 | 17..478 | 2295 | 99.8 | Plus |
lush-RA | 462 | CG8807-PA | 1..462 | 17..478 | 2295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-RB | 940 | CG8807-RB | 211..675 | 16..480 | 2310 | 99.8 | Plus |
lush-RA | 963 | CG8807-RA | 224..688 | 16..480 | 2310 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19605030..19605252 | 238..16 | 1115 | 100 | Minus |
3L | 28110227 | 3L | 19604820..19604975 | 393..238 | 750 | 98.7 | Minus |
3L | 28110227 | 3L | 19604673..19604763 | 480..390 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:51 has no hits.
BS14525.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:40 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 1..462 | 17..478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:48 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 8..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:28 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 225..684 | 17..476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:40 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 216..699 | 8..490 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:40 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lush-RA | 225..684 | 17..476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:40 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19604677..19604763 | 390..476 | 100 | <- | Minus |
3L | 19604824..19604974 | 239..389 | 99 | <- | Minus |
3L | 19605030..19605251 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:28 Download gff for
BS14525.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19597777..19597863 | 390..476 | 100 | <- | Minus |
arm_3L | 19597924..19598074 | 239..389 | 99 | <- | Minus |
arm_3L | 19598130..19598351 | 17..238 | 100 | | Minus |
BS14525.pep Sequence
Translation from 16 to 477
> BS14525.pep
MKHWKRRSSAVFAIVLQVLVLLLPDPAVAMTMEQFLTSLDMIRSGCAPKF
KLKTEDLDRLRVGDFNFPPSQDLMCYTKCVSLMAGTVNKKGEFNAPKALA
QLPHLVPPEMMEMSRKSVEACRDTHKQFKESCERVYQTAKCFSENADGQF
MWP*
BS14525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lush-PB | 153 | CG8807-PB | 1..153 | 1..153 | 810 | 100 | Plus |
lush-PA | 153 | CG8807-PA | 1..153 | 1..153 | 810 | 100 | Plus |
Obp19a-PC | 146 | CG11748-PC | 17..139 | 23..145 | 148 | 28.6 | Plus |