Clone BS14528 Report

Search the DGRC for BS14528

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptLectin-galC1-RA
Protein status:BS14528.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14528.3prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14528.3prime
ATGGTCTAGAAAGCTTCTACTTCCACACCACAATGGAAATGGTTTCCATT
TCGGGAGCTTCGCATATATACTTAAACAAACTGTTTGGATCCTGTGAGCA
GGGTCTATCGTTTAGCTCAAACTTCCGCGAGTCCTTGTAAATATAGCCAA
GGTGGATGCAGTGCTCCTTCTGCCCAGCATTATCCGGCTGATTCCTTGCC
CACCTGAGCGAACTAATTCGCTGGGCATTGGTGAACCATCTGTGGCTGCC
AGTCTTGGCCAGATCGTTTCCCGATGTCCAGTACGTCAGCCGTGATCCGT
TGGCCGTCAGGAAAGCCGTAACGGCATCGAACTCCTGGTCCGTTTCGAAT
GTGACCAGCTCAGAGTTCAATTCGCGGCATTTCTCGTAGGCCTCGTACCA
GTTCAAGGACTCCGTGCCAAAGAAGTAGTATCCGTCGTTGATTTTGGTAA
AGGGTTCCGCCTTGACGAGCGCACCAAACGTATTTCCTTCGTTTACTTGT
ATGGAGAACTTTTCGCGAGTCCATCCAGTTTTTGCTATGACCAGCAATGT
AATTAGTAGAACCGTAAGCTTCAGCATGTCGACTGATAACT

BS14528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9976-PA 561 Lectin-galC1-RA 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..575 577..16 2810 100 Minus
Lectin-galC1-RA 759 CG9976-RA 14..575 577..16 2810 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418090 488..16 2365 100 Minus
2L 23513712 2L 19417460..19417555 577..482 465 99 Minus
Blast to na_te.dros performed on 2015-02-10 16:08:55 has no hits.

BS14528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:12 Download gff for BS14528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9976-PA 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:07 Download gff for BS14528.3prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 8..585 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:34 Download gff for BS14528.3prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 8..585 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:34 Download gff for BS14528.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19417453..19417550 487..585 96 -> Minus
2L 19417620..19418095 8..486 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:07 Download gff for BS14528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417453..19417550 487..585 96 -> Minus
arm_2L 19417620..19418095 8..486 99   Minus

BS14528.5prime Sequence

591 bp (591 high quality bases) assembled on 2006-10-13

> BS14528.5prime
GAAGTTATCAGTCGACATGCTGAAGCTTACGGTTCTACTAATTACATTGC
TGGTCATAGCAAAAACTGGATGGACTCGCGAAAAGTTCTCCATACAAGTA
AACGAAGGAAATACGTTTGGTGCGCTCGTCAAGGCGGAACCCTTTACCAA
AATCAACGACGGATACTACTTCTTTGGCACGGAGTCCTTGAACTGGTACG
AGGCCTACGAGAAATGCCGCGAATTGAACTCTGAGCTGGTCACATTCGAA
ACGGACCAGGAGTTCGATGCCGTTACGGCTTTCCTGACGGCCAACGGATC
ACGGCTGACGTACTGGACATCGGGAAACGATCTGGCCAAGACTGGCAGCC
ACAGATGGTTCACCAATGCCCAGCGAATTAGTTCGCTCAGGTGGGCAAGG
AATCAGCCGGATAATGCTGGGCAGAAGGAGCACTGCATCCACCTTGGCTA
TATTTACAAGGACTCGCGGAAGTTTGAGCTAAACGATAGACCCTGCTCAC
AGGATCCAAACAGTTTGTTTAAGTATATATGCGAAGCTCCCGAAATGGAA
ACCATTTCCATTGTGGTGTGGAAGTAGAAGCTTTCTAGACC

BS14528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9976-PA 561 Lectin-galC1-RA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..575 17..578 2810 100 Plus
Lectin-galC1-RA 759 CG9976-RA 14..575 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418090 106..578 2365 100 Plus
2L 23513712 2L 19417460..19417555 17..112 465 99 Plus
Blast to na_te.dros performed on 2015-02-11 17:32:30 has no hits.

BS14528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:12 Download gff for BS14528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9976-PA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:41 Download gff for BS14528.5prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 9..586 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:54 Download gff for BS14528.5prime
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 9..586 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:54 Download gff for BS14528.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19417453..19417550 9..107 96 -> Plus
2L 19417620..19418095 108..586 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:41 Download gff for BS14528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417453..19417550 9..107 96 -> Plus
arm_2L 19417620..19418095 108..586 99   Plus

BS14528.complete Sequence

593 bp assembled on 2006-11-01

GenBank Submission: FJ637691

> BS14528.complete
GAAGTTATCAGTCGACATGCTGAAGCTTACGGTTCTACTAATTACATTGC
TGGTCATAGCAAAAACTGGATGGACTCGCGAAAAGTTCTCCATACAAGTA
AACGAAGGAAATACGTTTGGTGCGCTCGTCAAGGCGGAACCCTTTACCAA
AATCAACGACGGATACTACTTCTTTGGCACGGAGTCCTTGAACTGGTACG
AGGCCTACGAGAAATGCCGCGAATTGAACTCTGAGCTGGTCACATTCGAA
ACGGACCAGGAGTTCGATGCCGTTACGGCTTTCCTGACGGCCAACGGATC
ACGGCTGACGTACTGGACATCGGGAAACGATCTGGCCAAGACTGGCAGCC
ACAGATGGTTCACCAATGCCCAGCGAATTAGTTCGCTCAGGTGGGCAAGG
AATCAGCCGGATAATGCTGGGCAGAAGGAGCACTGCATCCACCTTGGCTA
TATTTACAAGGACTCGCGGAAGTTTGAGCTAAACGATAGACCCTGCTCAC
AGGATCCAAACAGTTTGTTTAAGTATATATGCGAAGCTCCCGAAATGGAA
ACCATTTCCATTGTGGTGTGGAAGTAGAAGCTTTCTAGACCAT

BS14528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 561 CG9976-PB 1..561 17..577 2805 100 Plus
Lectin-galC1-RA 561 CG9976-PA 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-RB 702 CG9976-RB 14..575 17..578 2810 100 Plus
Lectin-galC1-RA 759 CG9976-RA 14..575 17..578 2810 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19417618..19418090 106..578 2365 100 Plus
2L 23513712 2L 19417460..19417555 17..112 465 99 Plus
Blast to na_te.dros performed on 2014-11-27 14:57:45 has no hits.

BS14528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:42 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:51 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 9..586 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:35:21 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 14..574 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:42 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 7..580 9..586 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:48 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
Lectin-galC1-RA 14..574 17..577 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:48 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19417460..19417550 17..107 100 -> Plus
2L 19417620..19418089 108..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:35:21 Download gff for BS14528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19417460..19417550 17..107 100 -> Plus
arm_2L 19417620..19418089 108..577 100   Plus

BS14528.pep Sequence

Translation from 16 to 576

> BS14528.pep
MLKLTVLLITLLVIAKTGWTREKFSIQVNEGNTFGALVKAEPFTKINDGY
YFFGTESLNWYEAYEKCRELNSELVTFETDQEFDAVTAFLTANGSRLTYW
TSGNDLAKTGSHRWFTNAQRISSLRWARNQPDNAGQKEHCIHLGYIYKDS
RKFELNDRPCSQDPNSLFKYICEAPEMETISIVVWK*

BS14528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Lectin-galC1-PB 186 CG9976-PB 1..186 1..186 999 100 Plus
Lectin-galC1-PA 186 CG9976-PA 1..186 1..186 999 100 Plus
lectin-37Da-PB 186 CG33532-PB 1..186 1..186 592 57.5 Plus
lectin-37Da-PA 186 CG33532-PA 1..186 1..186 592 57.5 Plus
CG43055-PA 180 CG43055-PA 22..180 23..185 321 39.8 Plus