Clone Sequence Records
BS14532.3prime Sequence
839 bp (748 high quality bases) assembled on 2006-10-13
> BS14532.3prime
ATGGTCTAGAAAGCTTTTAATATCTACGTGTCCTTCTCTTGAAACTCAGC
CAAATGCCATTCCTGCTGGCGGTGAGGAAGGTGAGCGGAGACACCTCCAC
CCTGCACTGATCCTCATCCGCCAGCTGGACGCAGTGGTCCTGCAGTAGTG
TGGTCAGTGCAGCCTTCGTCTGGAGCAGGCCAAGTCGCATTCCCGGACAC
ATTCGTGGTCCAGCTCCGAAGCCCAGAAACCGACAGCCCATTGGTGGCTG
ATTTAGAAAGCGTTCTGGACGAAACTGGTTGGGTGCCGGATACAATGCGG
GATCTAAATGAATGGCCTGAACCGGCAACACCAGCACGGTGCCCAAATGC
ACCTTAAGTTCGCTGCTCGCTCCTGATTTCTGATCAGGAAGGGTGAATGT
CTTGGTGCAGCGCTTCTGCAGAGCCTGCATGGCCGGATGAAGACGCAGTG
CCTCCAAGAGCGCAGCTTCGCTATAGCGAAGTTCACCCAGAGCCACTGGA
TCAATCAGATTGCCAGCGTGGCGCTGGGCCACTTCATCCAATTCGATGTG
TAACCGTCGCTGTGCATCCTCATTGAGGGCCAATTCGTAGAGGGCGAAGG
CGAGTAGCATCGCCGAGGTTTCGTAGCCCTCCAGTAGGAGAGTGGTGGCA
TGTCCAGCTAGCTCCTCCTTTCCCAAGCCTCTTTTGCTTTCCGCCAGCCA
TTGCAAGAGGTTGTCGCCACCACTTCGGGCTTCCACCAATTCCCTGAACC
AGTGCTGCAGGGGCAGGGGTACGTATCGGTGGCCAATGAGTCTACCCAAT
CGAGGCGTGTGCAACAGTGACATGGTCTCCAGCAAACTC
BS14532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6585-PA | 1473 | Cyp308a1-RA | 651..1473 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:11:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 681..1503 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710724..18711195 | 777..306 | 2360 | 100 | Minus |
X | 23542271 | X | 18711257..18711545 | 305..17 | 1445 | 100 | Minus |
X | 23542271 | X | 18710605..18710667 | 839..777 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:11:04 has no hits.
BS14532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:16 Download gff for
BS14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6585-PA | 651..1473 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:36 Download gff for
BS14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 681..1503 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:03 Download gff for
BS14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 681..1503 | 17..839 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:03 Download gff for
BS14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18710605..18710667 | 777..839 | 100 | -> | Minus |
X | 18710725..18711195 | 306..776 | 100 | -> | Minus |
X | 18711257..18711545 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:36 Download gff for
BS14532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18604638..18604700 | 777..839 | 100 | -> | Minus |
arm_X | 18604758..18605228 | 306..776 | 100 | -> | Minus |
arm_X | 18605290..18605578 | 17..305 | 100 | | Minus |
BS14532.5prime Sequence
856 bp (759 high quality bases) assembled on 2006-10-13
> BS14532.5prime
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAGCCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGGAATTGGTGGAAGCCCGAAGTGGTGGCGACAACCTCT
TGCAATGGCTGGCGGAAAGCAAAGAGGCTTGGGAAAGGANGAGCTAGCTG
GACCTG
BS14532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6585-PA | 1473 | Cyp308a1-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG6585-PA | 1473 | Cyp308a1-RA | 806..838 | 821..853 | 146 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 31..868 | 17..853 | 4154 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710134..18710667 | 196..729 | 2670 | 100 | Plus |
X | 23542271 | X | 18709895..18710073 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 18710724..18710849 | 729..853 | 569 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:57:02 has no hits.
BS14532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:16 Download gff for
BS14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6585-PA | 1..841 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:22 Download gff for
BS14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..871 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:20 Download gff for
BS14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..871 | 8..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:20 Download gff for
BS14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18709886..18710073 | 8..195 | 98 | -> | Plus |
X | 18710134..18710667 | 196..729 | 100 | -> | Plus |
X | 18710725..18710852 | 730..856 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:22 Download gff for
BS14532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18603919..18604106 | 8..195 | 98 | -> | Plus |
arm_X | 18604167..18604700 | 196..729 | 100 | -> | Plus |
arm_X | 18604758..18604885 | 730..856 | 97 | | Plus |
BS14532.complete Sequence
1505 bp assembled on 2006-11-01
GenBank Submission: FJ637692
> BS14532.complete
GAAGTTATCAGTCGACATGCTGCCACTGGTGCTATTTATCCTATTGGCCG
CCACGCTCCTGTTTTGGAAATGGCAGGGCAATCACTGGCGTCGCCTGGGA
CTGGAGGCACCTTTTGGCTGGCCATTGGTTGGGAATATGTTGGACTTTGC
CCTGGGCCGCCGCTCATATGGAGAGATTTACCAGGAAATCTATACTCGGA
ATCCGGGCCTGAAATATGTGGGTTTCTATCGCCTGTTTAACGAACCCGCC
ATTCTGGTGCGTGACCAGGAGTTGCTGCGCCAGATCCTGGTGGGCCGTAA
CTTTGCCGACTGTGCGGACAACGCCGTTTATGTGGACCACCAGCGCGATG
TCCTGGCTAGCCACAATCCCTTCATCGCCAACGGAGACCGCTGGCGAGTC
TTGCGGGCCGACCTGGTGCCGCTCTTCACACCCAGCCGAGTGCGTCAGAC
CTTGCCGCATGTGGCCAGAGCATGTCAGTTGCTCCGGGATCAGGTGCCCC
TTGGACGCTTCGAGGCCAAGGACTTGGCCACGCGTTATACGCTACAAGTG
GTTGCCTCCGCGATCTTCGGTCTGGATGCACATTGCCTGGGGATTCACAT
GAGGGTGGCTCATGAACCAAGTCGCTGGCTGGAATGGCTCGCTCCGCTCT
TTCAGCCAAGCGTTTGGAGTTTGCTGGAGACCATGTCACTGTTGCACACG
CCTCGATTGGGTAGACTCATTGGCCACCGATACGTACCCCTGCCCCTGCA
GCACTGGTTCAGGGAATTGGTGGAAGCCCGAAGTGGTGGCGACAACCTCT
TGCAATGGCTGGCGGAAAGCAAAAGAGGCTTGGGAAAGGAGGAGCTAGCT
GGACATGCCACCACTCTCCTACTGGAGGGCTACGAAACCTCGGCGATGCT
ACTCGCCTTCGCCCTCTACGAATTGGCCCTCAATGAGGATGCACAGCGAC
GGTTACACATCGAATTGGATGAAGTGGCCCAGCGCCACGCTGGCAATCTG
ATTGATCCAGTGGCTCTGGGTGAACTTCGCTATAGCGAAGCTGCGCTCTT
GGAGGCACTGCGTCTTCATCCGGCCATGCAGGCTCTGCAGAAGCGCTGCA
CCAAGACATTCACCCTTCCTGATCAGAAATCAGGAGCGAGCAGCGAACTT
AAGGTGCATTTGGGCACCGTGCTGGTGTTGCCGGTTCAGGCCATTCATTT
AGATCCCGCATTGTATCCGGCACCCAACCAGTTTCGTCCAGAACGCTTTC
TAAATCAGCCACCAATGGGCTGTCGGTTTCTGGGCTTCGGAGCTGGACCA
CGAATGTGTCCGGGAATGCGACTTGGCCTGCTCCAGACGAAGGCTGCACT
GACCACACTACTGCAGGACCACTGCGTCCAGCTGGCGGATGAGGATCAGT
GCAGGGTGGAGGTGTCTCCGCTCACCTTCCTCACCGCCAGCAGGAATGGC
ATTTGGCTGAGTTTCAAGAGAAGGACACGTAGATATTAAAAGCTTTCTAG
ACCAT
BS14532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1473 | CG6585-PA | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-RA | 1596 | CG6585-RA | 31..1503 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18710134..18710667 | 196..729 | 2670 | 100 | Plus |
X | 23542271 | X | 18710724..18711195 | 729..1200 | 2360 | 100 | Plus |
X | 23542271 | X | 18711257..18711545 | 1201..1489 | 1445 | 100 | Plus |
X | 23542271 | X | 18709895..18710073 | 17..195 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:06:39 has no hits.
BS14532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:19 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 1..1473 | 17..1489 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:24 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..1503 | 8..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:52 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 31..1501 | 17..1487 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:19 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 22..1503 | 8..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:31 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp308a1-RA | 31..1501 | 17..1487 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:31 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18711257..18711543 | 1201..1487 | 100 | | Plus |
X | 18709895..18710073 | 17..195 | 100 | -> | Plus |
X | 18710134..18710667 | 196..729 | 100 | -> | Plus |
X | 18710725..18711195 | 730..1200 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:52 Download gff for
BS14532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18603928..18604106 | 17..195 | 100 | -> | Plus |
arm_X | 18604167..18604700 | 196..729 | 100 | -> | Plus |
arm_X | 18604758..18605228 | 730..1200 | 100 | -> | Plus |
arm_X | 18605290..18605576 | 1201..1487 | 100 | | Plus |
BS14532.pep Sequence
Translation from 16 to 1488
> BS14532.pep
MLPLVLFILLAATLLFWKWQGNHWRRLGLEAPFGWPLVGNMLDFALGRRS
YGEIYQEIYTRNPGLKYVGFYRLFNEPAILVRDQELLRQILVGRNFADCA
DNAVYVDHQRDVLASHNPFIANGDRWRVLRADLVPLFTPSRVRQTLPHVA
RACQLLRDQVPLGRFEAKDLATRYTLQVVASAIFGLDAHCLGIHMRVAHE
PSRWLEWLAPLFQPSVWSLLETMSLLHTPRLGRLIGHRYVPLPLQHWFRE
LVEARSGGDNLLQWLAESKRGLGKEELAGHATTLLLEGYETSAMLLAFAL
YELALNEDAQRRLHIELDEVAQRHAGNLIDPVALGELRYSEAALLEALRL
HPAMQALQKRCTKTFTLPDQKSGASSELKVHLGTVLVLPVQAIHLDPALY
PAPNQFRPERFLNQPPMGCRFLGFGAGPRMCPGMRLGLLQTKAALTTLLQ
DHCVQLADEDQCRVEVSPLTFLTASRNGIWLSFKRRTRRY*
BS14532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp308a1-PA | 490 | CG6585-PA | 1..490 | 1..490 | 2581 | 100 | Plus |
Cyp28c1-PB | 505 | CG1895-PB | 5..499 | 2..486 | 513 | 32.3 | Plus |
Cyp28c1-PA | 505 | CG1895-PA | 5..499 | 2..486 | 513 | 32.3 | Plus |
Cyp6a13-PA | 493 | CG2397-PA | 1..485 | 1..481 | 493 | 29.8 | Plus |
Cyp28d1-PA | 502 | CG10833-PA | 10..501 | 5..486 | 483 | 27.3 | Plus |