Clone Sequence Records
BS14535.3prime Sequence
826 bp (693 high quality bases) assembled on 2006-10-13
> BS14535.3prime
ATGGTCTAGAAAGCTTTTAATCAGTGTTGAGCAAAGGAATTATGAAGAAC
TGAATGAATATCTCCTCCTGGCTATCGCCCTGCATTACCAGATGCAGTTC
TAGGAGGCCAACGGAGTTCGTTTTAATGGCCACCTTGGTGGCCGACTGCA
TCGCCTTGTTGGTCATGCGGATCTGCTGGCTCTTGTAGCGAGCCACCACC
GTCTGTTTGCAGTTAAACATCATCATCATGGGACTCGTCTTTGCCACTTC
GACGCTGAACACCGCCTGCATGATCCCCACTGTGGTGATCTTAAAGTGCG
GGCGGTTCGGCGATGTCACGAACTCGAACTCCTCCGCGGACTTCTCCAGC
TCATTGAACACCTTCGATAGGTTCGGTCCGCGTACGAAAATAACATTAAG
ATCCGGATCCTTCAGATTCTGATCGTAGTCAATGGGCTCATCGCAGTCCA
TGGTTTTGATGGCGCACTCCGTGCTCACATCATCGTCGTCGTGCGGATAC
AGAATTATCTTCAGGGGATCGCCCTTATCCCTGTACATCATTCGCAGGCT
GCAATCGGCGGATCCGAAGAGACTGAGACACTCGGACAGCACATTCATTT
TCACACCGAAGCACTGGAAGTCCTGCACACGGAACTCCATGAAGGCACCC
GGCGGCATGAAAAGCGTTGCCTGGATGGACTTGCCCTGCTCCACGGTGAT
GCGCAGACCATCTTCGGAGACTTGCACCATCCCATAATCATTAAAGCAGA
TTGACTTGATGGCCTGAATGAAGGTCTTGATGTGCTCCACTCGAGCGACG
AATTTGCAGTCGCCGTAGGGCGATGG
BS14535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3240-PA | 825 | Rad1-RA | 16..825 | 826..17 | 4025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 628..1438 | 826..16 | 4040 | 99.9 | Minus |
| CG34314-RA | 1484 | CG34314-RA | 628..1438 | 826..16 | 4040 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573482..2574202 | 16..736 | 3605 | 100 | Plus |
| 2L | 23513712 | 2L | 2574276..2574365 | 737..826 | 435 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:21 has no hits.
BS14535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:18 Download gff for
BS14535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3240-PA | 16..825 | 17..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:49 Download gff for
BS14535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 628..1438 | 16..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:25 Download gff for
BS14535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 628..1438 | 16..826 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:25 Download gff for
BS14535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573480..2574202 | 14..736 | 99 | <- | Plus |
| 2L | 2574276..2574365 | 737..826 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:49 Download gff for
BS14535.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573480..2574202 | 14..736 | 99 | <- | Plus |
| arm_2L | 2574276..2574365 | 737..826 | 98 | | Plus |
BS14535.5prime Sequence
788 bp (750 high quality bases) assembled on 2006-10-13
> BS14535.5prime
GAAGTTATCAGTCGACATGACTGATGTGGAGCCATCGCCCTACGGCGACT
GCAAATTCGTCGCTCGAGTGGAGCACATCAAGACCTTCATCCAGGCCATC
AAGTCAATCTGCTTTAATGATTATGGGATGGTGCAAGTCTCCGAAGATGG
TCTGCGCATCACCGTGGAGCAGGGCAAGTCCATCCAGGCAACGCTTTTCA
TGCCGCCGGGTGCCTTCATGGAGTTCCGTGTGCAGGACTTCCAGTGCTTC
GGTGTGAAAATGAATGTGCTGTCCGAGTGTCTCAGTCTCTTCGGATCCGC
CGATTGCAGCCTGCGAATGATGTACAGGGATAAGGGCGATCCCCTGAAGA
TAATTCTGTATCCGCACGACGACGATGATGTGAGCACGGAGTGCGCCATC
AAAACCATGGACTGCGATGAGCCCATTGACTACGATCAGAATCTGAAGGA
TCCGGATCTTAATGTTATTTTCGTACGCGGACCGAACCTATCGAAGGTGT
TCAATGAGCTGGAGAAGTCCGCGGAGGAGTTCGAGTTCGTGACATCGCCG
AACCGCCCGCACTTTAAGATCACCACAGTGGGGATCATGCAGGCGGTGTT
CAGCGTCGAAGTGGCAAAGACGAGTCCCATGATGATGATGTTTAACTGCA
AACAGACGGTGGTGGCTCGCTACAAGAGCCAGCAGATCCGCATGACCAAC
AAGGCGATGCAGTCGGCCACCAAGGTGGCCATTAAAACGAACTCCGTTGG
CCTCCTAGAACTGCATCTGGTAATGCAGGGCGATAGCC
BS14535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3240-PA | 825 | Rad1-RA | 1..772 | 17..788 | 3860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1384 | 17..788 | 3860 | 100 | Plus |
| CG34314-RA | 1484 | CG34314-RA | 613..1384 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573536..2574202 | 788..122 | 3335 | 100 | Minus |
| 2L | 23513712 | 2L | 2574276..2574380 | 121..17 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:40 has no hits.
BS14535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:18 Download gff for
BS14535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3240-PA | 1..772 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:55 Download gff for
BS14535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1384 | 17..788 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:28 Download gff for
BS14535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1384 | 17..788 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:28 Download gff for
BS14535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573536..2574202 | 122..788 | 100 | <- | Minus |
| 2L | 2574276..2574380 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:55 Download gff for
BS14535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573536..2574202 | 122..788 | 100 | <- | Minus |
| arm_2L | 2574276..2574380 | 17..121 | 100 | | Minus |
BS14535.complete Sequence
857 bp assembled on 2006-11-01
GenBank Submission: FJ637693
> BS14535.complete
GAAGTTATCAGTCGACATGACTGATGTGGAGCCATCGCCCTACGGCGACT
GCAAATTCGTCGCTCGAGTGGAGCACATCAAGACCTTCATCCAGGCCATC
AAGTCAATCTGCTTTAATGATTATGGGATGGTGCAAGTCTCCGAAGATGG
TCTGCGCATCACCGTGGAGCAGGGCAAGTCCATCCAGGCAACGCTTTTCA
TGCCGCCGGGTGCCTTCATGGAGTTCCGTGTGCAGGACTTCCAGTGCTTC
GGTGTGAAAATGAATGTGCTGTCCGAGTGTCTCAGTCTCTTCGGATCCGC
CGATTGCAGCCTGCGAATGATGTACAGGGATAAGGGCGATCCCCTGAAGA
TAATTCTGTATCCGCACGACGACGATGATGTGAGCACGGAGTGCGCCATC
AAAACCATGGACTGCGATGAGCCCATTGACTACGATCAGAATCTGAAGGA
TCCGGATCTTAATGTTATTTTCGTACGCGGACCGAACCTATCGAAGGTGT
TCAATGAGCTGGAGAAGTCCGCGGAGGAGTTCGAGTTCGTGACATCGCCG
AACCGCCCGCACTTTAAGATCACCACAGTGGGGATCATGCAGGCGGTGTT
CAGCGTCGAAGTGGCAAAGACGAGTCCCATGATGATGATGTTTAACTGCA
AACAGACGGTGGTGGCTCGCTACAAGAGCCAGCAGATCCGCATGACCAAC
AAGGCGATGCAGTCGGCCACCAAGGTGGCCATTAAAACGAACTCCGTTGG
CCTCCTAGAACTGCATCTGGTAATGCAGGGCGATAGCCAGGAGGAGATAT
TCATTCAGTTCTTCATAATTCCTTTGCTCAACACTGATTAAAAGCTTTCT
AGACCAT
BS14535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 825 | CG3240-PA | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-RA | 1484 | CG3240-RA | 613..1438 | 17..842 | 4130 | 100 | Plus |
| CG34314-RA | 1484 | CG34314-RA | 613..1438 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2573482..2574202 | 842..122 | 3605 | 100 | Minus |
| 2L | 23513712 | 2L | 2574276..2574380 | 121..17 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:39 has no hits.
BS14535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:20 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 1..825 | 17..841 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:26 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 641..1466 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:55 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad1-RA | 613..1435 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:20 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 641..1466 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:03 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34314-RA | 613..1435 | 17..839 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:03 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2573485..2574202 | 122..839 | 100 | <- | Minus |
| 2L | 2574276..2574380 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:55 Download gff for
BS14535.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2573485..2574202 | 122..839 | 100 | <- | Minus |
| arm_2L | 2574276..2574380 | 17..121 | 100 | | Minus |
BS14535.pep Sequence
Translation from 16 to 840
> BS14535.pep
MTDVEPSPYGDCKFVARVEHIKTFIQAIKSICFNDYGMVQVSEDGLRITV
EQGKSIQATLFMPPGAFMEFRVQDFQCFGVKMNVLSECLSLFGSADCSLR
MMYRDKGDPLKIILYPHDDDDVSTECAIKTMDCDEPIDYDQNLKDPDLNV
IFVRGPNLSKVFNELEKSAEEFEFVTSPNRPHFKITTVGIMQAVFSVEVA
KTSPMMMMFNCKQTVVARYKSQQIRMTNKAMQSATKVAIKTNSVGLLELH
LVMQGDSQEEIFIQFFIIPLLNTD*
BS14535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad1-PA | 274 | CG3240-PA | 1..274 | 1..274 | 1423 | 100 | Plus |
