Clone Sequence Records
BS14538.5prime Sequence
339 bp (339 high quality bases) assembled on 2006-10-13
> BS14538.5prime
GAAGTTATCAGTCGACATGGCGGGATCTGGAGTTGCCAAGCAGATATTTG
CCCTCGATTTCGAGATCTTTGGACGAGTGCAAGGTGTGTTCTTCCGCAAA
CACACGTCGCATGAGGCTAAAAGATTGGGAGTTAGGGGCTGGTGCATGAA
TACCCGGGATGGGACCGTCAAGGGACAACTGGAGGCTCCTATGATGAATT
TAATGGAAATGAAACATTGGCTGGAGAACAACCGAATTCCCAACGCTAAG
GTCTCAAAGGCTGAATTTTCGCAAATCCAGGAAATCGAGGACTATACGTT
CACTTCCTTTGACATAAAACATTAAAAGCTTTCTAGACC
BS14538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18505-PA | 309 | Acyp2-RA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acyp2-RB | 619 | CG18505-RB | 148..458 | 17..327 | 1555 | 100 | Plus |
Acyp2-RA | 543 | CG18505-RA | 148..458 | 17..327 | 1555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15793210..15793326 | 211..327 | 585 | 100 | Plus |
3R | 32079331 | 3R | 15793042..15793152 | 101..211 | 555 | 100 | Plus |
3R | 32079331 | 3R | 15792835..15792903 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:48:43 has no hits.
BS14538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:21 Download gff for
BS14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18505-PA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:08 Download gff for
BS14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 144..458 | 9..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:00 Download gff for
BS14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 144..458 | 9..327 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:00 Download gff for
BS14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15792831..15792901 | 9..83 | 94 | -> | Plus |
3R | 15792957..15792973 | 84..100 | 100 | -> | Plus |
3R | 15793042..15793151 | 101..210 | 100 | -> | Plus |
3R | 15793210..15793326 | 211..327 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:08 Download gff for
BS14538.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11618553..11618623 | 9..83 | 94 | -> | Plus |
arm_3R | 11618679..11618695 | 84..100 | 100 | -> | Plus |
arm_3R | 11618764..11618873 | 101..210 | 100 | -> | Plus |
arm_3R | 11618932..11619048 | 211..327 | 100 | | Plus |
BS14538.3prime Sequence
339 bp (339 high quality bases) assembled on 2006-10-13
> BS14538.3prime
ATGGTCTAGAAAGCTTTTAATGTTTTATGTCAAAGGAAGTGAACGTATAG
TCCTCGATTTCCTGGATTTGCGAAAATTCAGCCTTTGAGACCTTAGCGTT
GGGAATTCGGTTGTTCTCCAGCCAATGTTTCATTTCCATTAAATTCATCA
TAGGAGCCTCCAGTTGTCCCTTGACGGTCCCATCCCGGGTATTCATGCAC
CAGCCCCTAACTCCCAATCTTTTAGCCTCATGCGACGTGTGTTTGCGGAA
GAACACACCTTGCACTCGTCCAAAGATCTCGAAATCGAGGGCAAATATCT
GCTTGGCAACTCCAGATCCCGCCATGTCGACTGATAACT
BS14538.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18505-PA | 309 | Acyp2-RA | 1..309 | 325..17 | 1545 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acyp2-RB | 619 | CG18505-RB | 148..458 | 325..15 | 1555 | 100 | Minus |
Acyp2-RA | 543 | CG18505-RA | 148..458 | 325..15 | 1555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15793210..15793326 | 131..15 | 585 | 100 | Minus |
3R | 32079331 | 3R | 15793042..15793152 | 241..131 | 555 | 100 | Minus |
3R | 32079331 | 3R | 15792835..15792903 | 325..257 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:02:02 has no hits.
BS14538.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:20 Download gff for
BS14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18505-PA | 1..309 | 17..325 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:05 Download gff for
BS14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 144..458 | 15..333 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:09 Download gff for
BS14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 144..458 | 15..333 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:09 Download gff for
BS14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15793042..15793151 | 132..241 | 100 | -> | Minus |
3R | 15793210..15793326 | 15..131 | 100 | | Minus |
3R | 15792831..15792901 | 259..333 | 94 | -> | Minus |
3R | 15792957..15792973 | 242..258 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:05 Download gff for
BS14538.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11618679..11618695 | 242..258 | 100 | -> | Minus |
arm_3R | 11618764..11618873 | 132..241 | 100 | -> | Minus |
arm_3R | 11618932..11619048 | 15..131 | 100 | | Minus |
arm_3R | 11618553..11618623 | 259..333 | 94 | -> | Minus |
BS14538.complete Sequence
341 bp assembled on 2006-11-01
GenBank Submission: FJ637694
> BS14538.complete
GAAGTTATCAGTCGACATGGCGGGATCTGGAGTTGCCAAGCAGATATTTG
CCCTCGATTTCGAGATCTTTGGACGAGTGCAAGGTGTGTTCTTCCGCAAA
CACACGTCGCATGAGGCTAAAAGATTGGGAGTTAGGGGCTGGTGCATGAA
TACCCGGGATGGGACCGTCAAGGGACAACTGGAGGCTCCTATGATGAATT
TAATGGAAATGAAACATTGGCTGGAGAACAACCGAATTCCCAACGCTAAG
GTCTCAAAGGCTGAATTTTCGCAAATCCAGGAAATCGAGGACTATACGTT
CACTTCCTTTGACATAAAACATTAAAAGCTTTCTAGACCAT
BS14538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acyp2-RB | 309 | CG18505-PB | 1..309 | 17..325 | 1545 | 100 | Plus |
Acyp2-RA | 309 | CG18505-PA | 1..309 | 17..325 | 1545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acyp2-RB | 619 | CG18505-RB | 148..458 | 17..327 | 1555 | 100 | Plus |
Acyp2-RA | 543 | CG18505-RA | 148..458 | 17..327 | 1555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15793210..15793326 | 211..327 | 585 | 100 | Plus |
3R | 32079331 | 3R | 15793042..15793152 | 101..211 | 555 | 100 | Plus |
3R | 32079331 | 3R | 15792835..15792903 | 17..85 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:36 has no hits.
BS14538.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:45:41 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 1..309 | 17..325 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:33:09 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 93..407 | 9..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:45 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 148..454 | 17..323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:45:41 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 93..407 | 9..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:02 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Acyp2-RA | 148..454 | 17..323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:02 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15793210..15793322 | 211..323 | 100 | | Plus |
3R | 15792835..15792901 | 17..83 | 100 | -> | Plus |
3R | 15792957..15792973 | 84..100 | 100 | -> | Plus |
3R | 15793042..15793151 | 101..210 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:45 Download gff for
BS14538.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11618932..11619044 | 211..323 | 100 | | Plus |
arm_3R | 11618557..11618623 | 17..83 | 100 | -> | Plus |
arm_3R | 11618679..11618695 | 84..100 | 100 | -> | Plus |
arm_3R | 11618764..11618873 | 101..210 | 100 | -> | Plus |
BS14538.pep Sequence
Translation from 16 to 324
> BS14538.pep
MAGSGVAKQIFALDFEIFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGT
VKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAEFSQIQEIEDYTFTSFDI
KH*
BS14538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Acyp2-PB | 102 | CG18505-PB | 1..102 | 1..102 | 540 | 100 | Plus |
Acyp2-PA | 102 | CG18505-PA | 1..102 | 1..102 | 540 | 100 | Plus |
CG34161-PC | 125 | CG34161-PC | 32..124 | 9..101 | 245 | 47.3 | Plus |
CG34161-PA | 125 | CG34161-PA | 32..124 | 9..101 | 245 | 47.3 | Plus |
CG11052-PD | 149 | CG11052-PD | 56..146 | 10..100 | 233 | 44 | Plus |