Clone BS14540 Report

Search the DGRC for BS14540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCpr66Cb-RA
Protein status:BS14540.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14540.3prime Sequence

519 bp (519 high quality bases) assembled on 2006-10-13

> BS14540.3prime
ATGGTCTAGAAAGCTTTTAGTAGTGGTGTTCGTGCAGCTCCTCATGATGA
TGCACTGGAGCGGTCTTGTGGACCACGGCGTTGAATCCATTGTGCTTGTC
GGCGGTGTAGTCCACGGTGCGGATGGAACCATCGGGCTCCACCAGGGAGT
ACTGTCCCTTGACGGTGTCACCATCGCGGGTCTCGTGCTGCGACTTCACA
TCTCCGGTGTGGAAGTCATTCACGCCGTACTTGAAAGCATATTTGGGAGG
AGCATAGTAATCCACATGTTCATCATGTCCGTGAGACTCGTGGGTCTCGT
AGTGGGGCTCAGCGTGTTCGAGGTGACCGTGCTCCTCGCCCAGTGAGATG
CGTTCGATTTGATGGTGGCCATACTCATGGATGGGCTCCGGTTCGTGATG
GGCCAGGTGCTCATATCCATGGCTCTCCTCGTAGTACTGGTGCTCCAACG
GATAGGCGAGGCTCAGGCACAGAGCCGAGGCGAAGATCAGATACTTGAAT
GCCATGTCGACTGATAACT

BS14540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7076-PA 489 CG7076-RA 1..489 505..17 2445 100 Minus
CG7072-PA 1224 CG7072-RA 391..452 121..60 160 90.3 Minus
CG13935-PA 585 CG13935-RA 181..239 163..105 145 89.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 66..554 505..17 2445 100 Minus
Cpr62Bc-RB 1017 CG1919-RB 248..420 233..61 445 83.8 Minus
Cpr62Bc-RA 1134 CG1919-RA 248..420 233..61 445 83.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337587..8337829 495..253 1215 100 Minus
3L 28110227 3L 8337912..8338148 253..17 1185 100 Minus
3L 28110227 3L 1840995..1841167 61..233 445 83.8 Plus
3L 28110227 3L 8326839..8326933 154..60 325 89.5 Minus
3L 28110227 3L 1834470..1834526 98..154 180 87.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:42:13 has no hits.

BS14540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:22 Download gff for BS14540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7076-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:19 Download gff for BS14540.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 12..505 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:23 Download gff for BS14540.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 12..505 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:23 Download gff for BS14540.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8337587..8337828 254..495 100 -> Minus
3L 8337912..8338151 12..253 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:19 Download gff for BS14540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330687..8330928 254..495 100 -> Minus
arm_3L 8331012..8331251 12..253 99   Minus

BS14540.5prime Sequence

519 bp (519 high quality bases) assembled on 2006-10-13

> BS14540.5prime
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACTAAAAGCTTTCTAGACC

BS14540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7076-PA 489 CG7076-RA 1..489 17..505 2445 100 Plus
CG7072-PA 1224 CG7072-RA 391..452 401..462 160 90.3 Plus
CG13935-PA 585 CG13935-RA 181..239 359..417 145 89.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 66..554 17..505 2445 100 Plus
Cpr62Bc-RB 1017 CG1919-RB 248..420 289..461 445 83.8 Plus
Cpr62Bc-RA 1134 CG1919-RA 248..420 289..461 445 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337587..8337829 27..269 1215 100 Plus
3L 28110227 3L 8337912..8338148 269..505 1185 100 Plus
3L 28110227 3L 1840995..1841167 461..289 445 83.8 Minus
3L 28110227 3L 8326839..8326933 368..462 325 89.5 Plus
3L 28110227 3L 1834470..1834526 424..368 180 87.7 Minus
Blast to na_te.dros performed on 2015-02-02 18:04:41 has no hits.

BS14540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:23 Download gff for BS14540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7076-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:12 Download gff for BS14540.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 17..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:26 Download gff for BS14540.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 17..510 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:26 Download gff for BS14540.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8337587..8337828 27..268 100 -> Plus
3L 8337912..8338151 269..510 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:12 Download gff for BS14540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330687..8330928 27..268 100 -> Plus
arm_3L 8331012..8331251 269..510 99   Plus

BS14540.complete Sequence

521 bp assembled on 2006-11-01

GenBank Submission: FJ637695

> BS14540.complete
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACTAAAAGCTTTCTAGACCAT

BS14540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 489 CG7076-PA 1..489 17..505 2445 100 Plus
Cpr62Bc-RB 543 CG1919-PB 168..340 289..461 445 83.8 Plus
Cpr62Bc-RA 543 CG1919-PA 168..340 289..461 445 83.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-RA 1001 CG7076-RA 66..554 17..505 2445 100 Plus
Cpr62Bc-RB 1017 CG1919-RB 248..420 289..461 445 83.8 Plus
Cpr62Bc-RA 1134 CG1919-RA 248..420 289..461 445 83.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8337587..8337829 27..269 1215 100 Plus
3L 28110227 3L 8337912..8338148 269..505 1185 100 Plus
3L 28110227 3L 1840995..1841167 461..289 445 83.8 Minus
3L 28110227 3L 8326839..8326933 368..462 325 89.5 Plus
3L 28110227 3L 1834470..1834526 424..368 180 87.7 Minus
Blast to na_te.dros performed on 2014-11-27 20:09:42 has no hits.

BS14540.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:21 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:28 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 17..510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:03 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..552 17..503 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:21 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..557 17..510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:08 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr66Cb-RA 66..552 17..503 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:08 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8337587..8337828 27..268 100 -> Plus
3L 8337912..8338146 269..503 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:03 Download gff for BS14540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8330687..8330928 27..268 100 -> Plus
arm_3L 8331012..8331246 269..503 100   Plus

BS14540.pep Sequence

Translation from 16 to 504

> BS14540.pep
MAFKYLIFASALCLSLAYPLEHQYYEESHGYEHLAHHEPEPIHEYGHHQI
ERISLGEEHGHLEHAEPHYETHESHGHDEHVDYYAPPKYAFKYGVNDFHT
GDVKSQHETRDGDTVKGQYSLVEPDGSIRTVDYTADKHNGFNAVVHKTAP
VHHHEELHEHHY*

BS14540.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr66Cb-PA 162 CG7076-PA 1..162 1..162 921 100 Plus
Cpr62Bc-PB 180 CG1919-PB 17..119 54..154 349 66.3 Plus
Cpr62Bc-PA 180 CG1919-PA 17..119 54..154 349 66.3 Plus
CG34461-PB 138 CG34461-PB 20..138 58..162 322 58 Plus
CG34461-PA 138 CG34461-PA 20..138 58..162 322 58 Plus