Clone Sequence Records
BS14540.3prime Sequence
519 bp (519 high quality bases) assembled on 2006-10-13
> BS14540.3prime
ATGGTCTAGAAAGCTTTTAGTAGTGGTGTTCGTGCAGCTCCTCATGATGA
TGCACTGGAGCGGTCTTGTGGACCACGGCGTTGAATCCATTGTGCTTGTC
GGCGGTGTAGTCCACGGTGCGGATGGAACCATCGGGCTCCACCAGGGAGT
ACTGTCCCTTGACGGTGTCACCATCGCGGGTCTCGTGCTGCGACTTCACA
TCTCCGGTGTGGAAGTCATTCACGCCGTACTTGAAAGCATATTTGGGAGG
AGCATAGTAATCCACATGTTCATCATGTCCGTGAGACTCGTGGGTCTCGT
AGTGGGGCTCAGCGTGTTCGAGGTGACCGTGCTCCTCGCCCAGTGAGATG
CGTTCGATTTGATGGTGGCCATACTCATGGATGGGCTCCGGTTCGTGATG
GGCCAGGTGCTCATATCCATGGCTCTCCTCGTAGTACTGGTGCTCCAACG
GATAGGCGAGGCTCAGGCACAGAGCCGAGGCGAAGATCAGATACTTGAAT
GCCATGTCGACTGATAACT
BS14540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7076-PA | 489 | CG7076-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
CG7072-PA | 1224 | CG7072-RA | 391..452 | 121..60 | 160 | 90.3 | Minus |
CG13935-PA | 585 | CG13935-RA | 181..239 | 163..105 | 145 | 89.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 66..554 | 505..17 | 2445 | 100 | Minus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 233..61 | 445 | 83.8 | Minus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 233..61 | 445 | 83.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337587..8337829 | 495..253 | 1215 | 100 | Minus |
3L | 28110227 | 3L | 8337912..8338148 | 253..17 | 1185 | 100 | Minus |
3L | 28110227 | 3L | 1840995..1841167 | 61..233 | 445 | 83.8 | Plus |
3L | 28110227 | 3L | 8326839..8326933 | 154..60 | 325 | 89.5 | Minus |
3L | 28110227 | 3L | 1834470..1834526 | 98..154 | 180 | 87.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:42:13 has no hits.
BS14540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:22 Download gff for
BS14540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7076-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:19 Download gff for
BS14540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 12..505 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:23 Download gff for
BS14540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 12..505 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:23 Download gff for
BS14540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337587..8337828 | 254..495 | 100 | -> | Minus |
3L | 8337912..8338151 | 12..253 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:19 Download gff for
BS14540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330687..8330928 | 254..495 | 100 | -> | Minus |
arm_3L | 8331012..8331251 | 12..253 | 99 | | Minus |
BS14540.5prime Sequence
519 bp (519 high quality bases) assembled on 2006-10-13
> BS14540.5prime
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACTAAAAGCTTTCTAGACC
BS14540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7076-PA | 489 | CG7076-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG7072-PA | 1224 | CG7072-RA | 391..452 | 401..462 | 160 | 90.3 | Plus |
CG13935-PA | 585 | CG13935-RA | 181..239 | 359..417 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 66..554 | 17..505 | 2445 | 100 | Plus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 289..461 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337587..8337829 | 27..269 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 8337912..8338148 | 269..505 | 1185 | 100 | Plus |
3L | 28110227 | 3L | 1840995..1841167 | 461..289 | 445 | 83.8 | Minus |
3L | 28110227 | 3L | 8326839..8326933 | 368..462 | 325 | 89.5 | Plus |
3L | 28110227 | 3L | 1834470..1834526 | 424..368 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:04:41 has no hits.
BS14540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:23 Download gff for
BS14540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7076-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:12 Download gff for
BS14540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:26 Download gff for
BS14540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:26 Download gff for
BS14540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337587..8337828 | 27..268 | 100 | -> | Plus |
3L | 8337912..8338151 | 269..510 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:12 Download gff for
BS14540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330687..8330928 | 27..268 | 100 | -> | Plus |
arm_3L | 8331012..8331251 | 269..510 | 99 | | Plus |
BS14540.complete Sequence
521 bp assembled on 2006-11-01
GenBank Submission: FJ637695
> BS14540.complete
GAAGTTATCAGTCGACATGGCATTCAAGTATCTGATCTTCGCCTCGGCTC
TGTGCCTGAGCCTCGCCTATCCGTTGGAGCACCAGTACTACGAGGAGAGC
CATGGATATGAGCACCTGGCCCATCACGAACCGGAGCCCATCCATGAGTA
TGGCCACCATCAAATCGAACGCATCTCACTGGGCGAGGAGCACGGTCACC
TCGAACACGCTGAGCCCCACTACGAGACCCACGAGTCTCACGGACATGAT
GAACATGTGGATTACTATGCTCCTCCCAAATATGCTTTCAAGTACGGCGT
GAATGACTTCCACACCGGAGATGTGAAGTCGCAGCACGAGACCCGCGATG
GTGACACCGTCAAGGGACAGTACTCCCTGGTGGAGCCCGATGGTTCCATC
CGCACCGTGGACTACACCGCCGACAAGCACAATGGATTCAACGCCGTGGT
CCACAAGACCGCTCCAGTGCATCATCATGAGGAGCTGCACGAACACCACT
ACTAAAAGCTTTCTAGACCAT
BS14540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 489 | CG7076-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Cpr62Bc-RB | 543 | CG1919-PB | 168..340 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 543 | CG1919-PA | 168..340 | 289..461 | 445 | 83.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-RA | 1001 | CG7076-RA | 66..554 | 17..505 | 2445 | 100 | Plus |
Cpr62Bc-RB | 1017 | CG1919-RB | 248..420 | 289..461 | 445 | 83.8 | Plus |
Cpr62Bc-RA | 1134 | CG1919-RA | 248..420 | 289..461 | 445 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8337587..8337829 | 27..269 | 1215 | 100 | Plus |
3L | 28110227 | 3L | 8337912..8338148 | 269..505 | 1185 | 100 | Plus |
3L | 28110227 | 3L | 1840995..1841167 | 461..289 | 445 | 83.8 | Minus |
3L | 28110227 | 3L | 8326839..8326933 | 368..462 | 325 | 89.5 | Plus |
3L | 28110227 | 3L | 1834470..1834526 | 424..368 | 180 | 87.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:09:42 has no hits.
BS14540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:21 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:28 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:03 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..552 | 17..503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:21 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..557 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:08 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr66Cb-RA | 66..552 | 17..503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:08 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8337587..8337828 | 27..268 | 100 | -> | Plus |
3L | 8337912..8338146 | 269..503 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:03 Download gff for
BS14540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8330687..8330928 | 27..268 | 100 | -> | Plus |
arm_3L | 8331012..8331246 | 269..503 | 100 | | Plus |
BS14540.pep Sequence
Translation from 16 to 504
> BS14540.pep
MAFKYLIFASALCLSLAYPLEHQYYEESHGYEHLAHHEPEPIHEYGHHQI
ERISLGEEHGHLEHAEPHYETHESHGHDEHVDYYAPPKYAFKYGVNDFHT
GDVKSQHETRDGDTVKGQYSLVEPDGSIRTVDYTADKHNGFNAVVHKTAP
VHHHEELHEHHY*
BS14540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr66Cb-PA | 162 | CG7076-PA | 1..162 | 1..162 | 921 | 100 | Plus |
Cpr62Bc-PB | 180 | CG1919-PB | 17..119 | 54..154 | 349 | 66.3 | Plus |
Cpr62Bc-PA | 180 | CG1919-PA | 17..119 | 54..154 | 349 | 66.3 | Plus |
CG34461-PB | 138 | CG34461-PB | 20..138 | 58..162 | 322 | 58 | Plus |
CG34461-PA | 138 | CG34461-PA | 20..138 | 58..162 | 322 | 58 | Plus |