Clone BS14542 Report

Search the DGRC for BS14542

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCpr47Ea-RA
Protein status:BS14542.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14542.3prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14542.3prime
ATGGTCTAGAAAGCTTTTACTTGAAGAATCTTCCGGGAGCGGCGGCGGCG
CGAACTGGTGGCGGTGTGGGTATGTGGGCTCCTTCGGCGCGGTATCCGTT
CTCATCAGCAATGTAGGTGATGGTGTAGACCACGCCATCGGGTCCGGTGT
ACGAGTAGGAGCCCTGCATCACCTGAGCCTCGATCTGACTGCCCGGGTTC
TTCAAATAGCCAGCCTCATCCGCTCGGATTCCGTTGCTTGTCTCGTAGTT
GTACTGATAGGAGCCATCGGGATTCAGGTCGAAGTTCTGCTTGAGAATCA
CCGCGTTCGCGTCGAAGGAGTTGCCGCGTGGTGGGGGAAGTCCGCGTTGT
GGCTGCGCCTGAATGAAACTGAGGCAGCAGAGGGCCAAGACGAGGGCTGC
GGCGGAGGCGTGGGTGAGCGACATGTCGACTGATAACT

BS14542.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9079-PA 408 CG9079-RA 1..408 424..17 2040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ea-RA 829 CG9079-RA 45..453 425..17 2045 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11252716..11252892 249..425 885 100 Plus
2R 25286936 2R 11252127..11252285 17..175 795 100 Plus
2R 25286936 2R 11252367..11252444 171..248 390 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:42:48 has no hits.

BS14542.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:24 Download gff for BS14542.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9079-PA 1..408 17..424 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:21 Download gff for BS14542.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 36..459 12..434 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:27 Download gff for BS14542.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 36..459 12..434 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:27 Download gff for BS14542.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11252121..11252282 12..172 98 <- Plus
2R 11252369..11252444 173..248 100 <- Plus
2R 11252716..11252896 249..431 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:21 Download gff for BS14542.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7139626..7139787 12..172 98 <- Plus
arm_2R 7140221..7140401 249..431 98   Plus
arm_2R 7139874..7139949 173..248 100 <- Plus

BS14542.5prime Sequence

438 bp (438 high quality bases) assembled on 2006-10-13

> BS14542.5prime
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGTAAAAGCTTTCTAGACC

BS14542.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9079-PA 408 CG9079-RA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ea-RA 829 CG9079-RA 45..453 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11252716..11252892 192..16 885 100 Minus
2R 25286936 2R 11252127..11252285 424..266 795 100 Minus
2R 25286936 2R 11252367..11252444 270..193 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:46:56 has no hits.

BS14542.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:24 Download gff for BS14542.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9079-PA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:09 Download gff for BS14542.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 36..459 7..429 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:09 Download gff for BS14542.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 36..459 7..429 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:09 Download gff for BS14542.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11252121..11252282 269..429 98 <- Minus
2R 11252369..11252444 193..268 100 <- Minus
2R 11252716..11252896 10..192 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:09 Download gff for BS14542.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7139874..7139949 193..268 100 <- Minus
arm_2R 7140221..7140401 10..192 98   Minus
arm_2R 7139626..7139787 269..429 98 <- Minus

BS14542.complete Sequence

440 bp assembled on 2006-11-01

GenBank Submission: FJ637696

> BS14542.complete
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGTAAAAGCTTTCTAGACCAT

BS14542.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ea-RA 408 CG9079-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ea-RA 829 CG9079-RA 45..453 16..424 2045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11252716..11252892 192..16 885 100 Minus
2R 25286936 2R 11252127..11252285 424..266 795 100 Minus
2R 25286936 2R 11252367..11252444 270..193 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:38:11 has no hits.

BS14542.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:54 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:39 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:14 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 46..451 17..422 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:54 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 1..408 17..424 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:45 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr47Ea-RA 46..451 17..422 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:45 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11252129..11252282 269..422 100 <- Minus
2R 11252369..11252444 193..268 100 <- Minus
2R 11252716..11252891 17..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:14 Download gff for BS14542.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7139634..7139787 269..422 100 <- Minus
arm_2R 7139874..7139949 193..268 100 <- Minus
arm_2R 7140221..7140396 17..192 100   Minus

BS14542.pep Sequence

Translation from 16 to 423

> BS14542.pep
MSLTHASAAALVLALCCLSFIQAQPQRGLPPPRGNSFDANAVILKQNFDL
NPDGSYQYNYETSNGIRADEAGYLKNPGSQIEAQVMQGSYSYTGPDGVVY
TITYIADENGYRAEGAHIPTPPPVRAAAAPGRFFK*

BS14542.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr47Ea-PA 135 CG9079-PA 1..135 1..135 713 100 Plus
Cpr49Aa-PB 144 CG30045-PB 6..117 11..127 299 50.4 Plus
Cpr65Az-PA 239 CG12330-PA 91..198 29..124 264 48.1 Plus
Cpr49Ae-PA 134 CG8505-PA 5..117 9..127 234 42.6 Plus
Cpr47Ee-PA 369 CG13222-PA 113..196 49..130 229 53.6 Plus