Clone Sequence Records
BS14542.3prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14542.3prime
ATGGTCTAGAAAGCTTTTACTTGAAGAATCTTCCGGGAGCGGCGGCGGCG
CGAACTGGTGGCGGTGTGGGTATGTGGGCTCCTTCGGCGCGGTATCCGTT
CTCATCAGCAATGTAGGTGATGGTGTAGACCACGCCATCGGGTCCGGTGT
ACGAGTAGGAGCCCTGCATCACCTGAGCCTCGATCTGACTGCCCGGGTTC
TTCAAATAGCCAGCCTCATCCGCTCGGATTCCGTTGCTTGTCTCGTAGTT
GTACTGATAGGAGCCATCGGGATTCAGGTCGAAGTTCTGCTTGAGAATCA
CCGCGTTCGCGTCGAAGGAGTTGCCGCGTGGTGGGGGAAGTCCGCGTTGT
GGCTGCGCCTGAATGAAACTGAGGCAGCAGAGGGCCAAGACGAGGGCTGC
GGCGGAGGCGTGGGTGAGCGACATGTCGACTGATAACT
BS14542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9079-PA | 408 | CG9079-RA | 1..408 | 424..17 | 2040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ea-RA | 829 | CG9079-RA | 45..453 | 425..17 | 2045 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11252716..11252892 | 249..425 | 885 | 100 | Plus |
2R | 25286936 | 2R | 11252127..11252285 | 17..175 | 795 | 100 | Plus |
2R | 25286936 | 2R | 11252367..11252444 | 171..248 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:42:48 has no hits.
BS14542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:24 Download gff for
BS14542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9079-PA | 1..408 | 17..424 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:21 Download gff for
BS14542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 36..459 | 12..434 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:27 Download gff for
BS14542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 36..459 | 12..434 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:27 Download gff for
BS14542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11252121..11252282 | 12..172 | 98 | <- | Plus |
2R | 11252369..11252444 | 173..248 | 100 | <- | Plus |
2R | 11252716..11252896 | 249..431 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:21 Download gff for
BS14542.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7139626..7139787 | 12..172 | 98 | <- | Plus |
arm_2R | 7140221..7140401 | 249..431 | 98 | | Plus |
arm_2R | 7139874..7139949 | 173..248 | 100 | <- | Plus |
BS14542.5prime Sequence
438 bp (438 high quality bases) assembled on 2006-10-13
> BS14542.5prime
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGTAAAAGCTTTCTAGACC
BS14542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9079-PA | 408 | CG9079-RA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ea-RA | 829 | CG9079-RA | 45..453 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11252716..11252892 | 192..16 | 885 | 100 | Minus |
2R | 25286936 | 2R | 11252127..11252285 | 424..266 | 795 | 100 | Minus |
2R | 25286936 | 2R | 11252367..11252444 | 270..193 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:46:56 has no hits.
BS14542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:24 Download gff for
BS14542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9079-PA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:09 Download gff for
BS14542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 36..459 | 7..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:09 Download gff for
BS14542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 36..459 | 7..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:09 Download gff for
BS14542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11252121..11252282 | 269..429 | 98 | <- | Minus |
2R | 11252369..11252444 | 193..268 | 100 | <- | Minus |
2R | 11252716..11252896 | 10..192 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:09 Download gff for
BS14542.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7139874..7139949 | 193..268 | 100 | <- | Minus |
arm_2R | 7140221..7140401 | 10..192 | 98 | | Minus |
arm_2R | 7139626..7139787 | 269..429 | 98 | <- | Minus |
BS14542.complete Sequence
440 bp assembled on 2006-11-01
GenBank Submission: FJ637696
> BS14542.complete
GAAGTTATCAGTCGACATGTCGCTCACCCACGCCTCCGCCGCAGCCCTCG
TCTTGGCCCTCTGCTGCCTCAGTTTCATTCAGGCGCAGCCACAACGCGGA
CTTCCCCCACCACGCGGCAACTCCTTCGACGCGAACGCGGTGATTCTCAA
GCAGAACTTCGACCTGAATCCCGATGGCTCCTATCAGTACAACTACGAGA
CAAGCAACGGAATCCGAGCGGATGAGGCTGGCTATTTGAAGAACCCGGGC
AGTCAGATCGAGGCTCAGGTGATGCAGGGCTCCTACTCGTACACCGGACC
CGATGGCGTGGTCTACACCATCACCTACATTGCTGATGAGAACGGATACC
GCGCCGAAGGAGCCCACATACCCACACCGCCACCAGTTCGCGCCGCCGCC
GCTCCCGGAAGATTCTTCAAGTAAAAGCTTTCTAGACCAT
BS14542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ea-RA | 408 | CG9079-PA | 1..408 | 17..424 | 2040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ea-RA | 829 | CG9079-RA | 45..453 | 16..424 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11252716..11252892 | 192..16 | 885 | 100 | Minus |
2R | 25286936 | 2R | 11252127..11252285 | 424..266 | 795 | 100 | Minus |
2R | 25286936 | 2R | 11252367..11252444 | 270..193 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:11 has no hits.
BS14542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:54 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:39 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:14 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 46..451 | 17..422 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:54 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 1..408 | 17..424 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:45 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr47Ea-RA | 46..451 | 17..422 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:45 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11252129..11252282 | 269..422 | 100 | <- | Minus |
2R | 11252369..11252444 | 193..268 | 100 | <- | Minus |
2R | 11252716..11252891 | 17..192 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:14 Download gff for
BS14542.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7139634..7139787 | 269..422 | 100 | <- | Minus |
arm_2R | 7139874..7139949 | 193..268 | 100 | <- | Minus |
arm_2R | 7140221..7140396 | 17..192 | 100 | | Minus |
BS14542.pep Sequence
Translation from 16 to 423
> BS14542.pep
MSLTHASAAALVLALCCLSFIQAQPQRGLPPPRGNSFDANAVILKQNFDL
NPDGSYQYNYETSNGIRADEAGYLKNPGSQIEAQVMQGSYSYTGPDGVVY
TITYIADENGYRAEGAHIPTPPPVRAAAAPGRFFK*
BS14542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr47Ea-PA | 135 | CG9079-PA | 1..135 | 1..135 | 713 | 100 | Plus |
Cpr49Aa-PB | 144 | CG30045-PB | 6..117 | 11..127 | 299 | 50.4 | Plus |
Cpr65Az-PA | 239 | CG12330-PA | 91..198 | 29..124 | 264 | 48.1 | Plus |
Cpr49Ae-PA | 134 | CG8505-PA | 5..117 | 9..127 | 234 | 42.6 | Plus |
Cpr47Ee-PA | 369 | CG13222-PA | 113..196 | 49..130 | 229 | 53.6 | Plus |