Clone BS14544 Report

Search the DGRC for BS14544

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:145
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG42254-RB
Protein status:BS14544.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14544.3prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14544.3prime
ATGGTCTAGAAAGCTTTCATATTGGTTGGGCAACATCTTTCGGTGCAGCT
AATCCACATGCAGGCATCTGTATTGCCTGGTAGCCTTGAATTTCTTTGAT
AATCTTATCCTCCTGGCTGTCCAAGGCGACAAAGACCAAAAAGAAATCGT
AGTGCGTTTCGATGTCCCGCGCACTAACCACGACGCACCAATCCATCAGG
GCCTCGGTTATCTTATCTGTAGCCTTGTCCGCACTGGAAACGTCCGGATT
CCAGTGGGAATCCTCTTCATCCTCTGATGTTGGATATATGACATAGGTTC
TGTAGCACTTGTGCCGCTCCATGTCGACTGATAACT

BS14544.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:17:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12854-PA 306 CG12854-RA 1..306 322..17 1505 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:10:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769741..14770049 16..324 1530 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 16:10:33 has no hits.

BS14544.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:32 Download gff for BS14544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12854-PA 1..306 17..322 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:21 Download gff for BS14544.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 777..1089 16..331 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55 Download gff for BS14544.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 16..331 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55 Download gff for BS14544.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 16..331 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:21 Download gff for BS14544.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657246..10657558 16..331 98   Plus

BS14544.5prime Sequence

336 bp (336 high quality bases) assembled on 2006-10-13

> BS14544.5prime
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATATGAAAGCTTTCTAGACC

BS14544.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12854-PA 306 CG12854-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 17:33:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769741..14770049 323..15 1545 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:46 has no hits.

BS14544.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:32 Download gff for BS14544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12854-PA 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:55 Download gff for BS14544.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 777..1089 8..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:11 Download gff for BS14544.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 8..323 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:11 Download gff for BS14544.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14769741..14770053 8..323 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:55 Download gff for BS14544.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657246..10657558 8..323 99   Minus

BS14544.complete Sequence

338 bp assembled on 2006-11-01

GenBank Submission: FJ637697

> BS14544.complete
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATATGAAAGCTTTCTAGACCAT

BS14544.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:02:54 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:02:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14769741..14770049 323..15 1545 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:02:53 has no hits.

BS14544.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:23 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 1..306 17..322 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:29 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 799..1111 8..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:10 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 783..1087 17..321 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:23 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
CG42254-RB 799..1111 8..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:36 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14769743..14770047 17..321 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:36 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14769743..14770047 17..321 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:10 Download gff for BS14544.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10657248..10657552 17..321 100   Minus

BS14544.pep Sequence

Translation from 16 to 321

> BS14544.pep
MERHKCYRTYVIYPTSEDEEDSHWNPDVSSADKATDKITEALMDWCVVVS
ARDIETHYDFFLVFVALDSQEDKIIKEIQGYQAIQMPACGLAAPKDVAQP
I*
Sequence BS14544.pep has no blast hits.