Clone Sequence Records
BS14544.3prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14544.3prime
ATGGTCTAGAAAGCTTTCATATTGGTTGGGCAACATCTTTCGGTGCAGCT
AATCCACATGCAGGCATCTGTATTGCCTGGTAGCCTTGAATTTCTTTGAT
AATCTTATCCTCCTGGCTGTCCAAGGCGACAAAGACCAAAAAGAAATCGT
AGTGCGTTTCGATGTCCCGCGCACTAACCACGACGCACCAATCCATCAGG
GCCTCGGTTATCTTATCTGTAGCCTTGTCCGCACTGGAAACGTCCGGATT
CCAGTGGGAATCCTCTTCATCCTCTGATGTTGGATATATGACATAGGTTC
TGTAGCACTTGTGCCGCTCCATGTCGACTGATAACT
BS14544.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:17:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12854-PA | 306 | CG12854-RA | 1..306 | 322..17 | 1505 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:10:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769741..14770049 | 16..324 | 1530 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:10:33 has no hits.
BS14544.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:32 Download gff for
BS14544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12854-PA | 1..306 | 17..322 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:21 Download gff for
BS14544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 777..1089 | 16..331 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55 Download gff for
BS14544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 16..331 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:55 Download gff for
BS14544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 16..331 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:21 Download gff for
BS14544.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657246..10657558 | 16..331 | 98 | | Plus |
BS14544.5prime Sequence
336 bp (336 high quality bases) assembled on 2006-10-13
> BS14544.5prime
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATATGAAAGCTTTCTAGACC
BS14544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12854-PA | 306 | CG12854-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 17:33:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769741..14770049 | 323..15 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:33:46 has no hits.
BS14544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:53:32 Download gff for
BS14544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12854-PA | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:55 Download gff for
BS14544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 777..1089 | 8..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:11 Download gff for
BS14544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 8..323 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:11 Download gff for
BS14544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769741..14770053 | 8..323 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:55 Download gff for
BS14544.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657246..10657558 | 8..323 | 99 | | Minus |
BS14544.complete Sequence
338 bp assembled on 2006-11-01
GenBank Submission: FJ637697
> BS14544.complete
GAAGTTATCAGTCGACATGGAGCGGCACAAGTGCTACAGAACCTATGTCA
TATATCCAACATCAGAGGATGAAGAGGATTCCCACTGGAATCCGGACGTT
TCCAGTGCGGACAAGGCTACAGATAAGATAACCGAGGCCCTGATGGATTG
GTGCGTCGTGGTTAGTGCGCGGGACATCGAAACGCACTACGATTTCTTCT
TGGTCTTTGTCGCCTTGGACAGCCAGGAGGATAAGATTATCAAAGAAATT
CAAGGCTACCAGGCAATACAGATGCCTGCATGTGGATTAGCTGCACCGAA
AGATGTTGCCCAACCAATATGAAAGCTTTCTAGACCAT
BS14544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 10:02:54 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 10:02:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14769741..14770049 | 323..15 | 1545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:02:53 has no hits.
BS14544.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:36:23 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 1..306 | 17..322 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:09:29 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 799..1111 | 8..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:10 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 783..1087 | 17..321 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:36:23 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42254-RB | 799..1111 | 8..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:36 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769743..14770047 | 17..321 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:11:36 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14769743..14770047 | 17..321 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:10 Download gff for
BS14544.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10657248..10657552 | 17..321 | 100 | | Minus |
BS14544.pep Sequence
Translation from 16 to 321
> BS14544.pep
MERHKCYRTYVIYPTSEDEEDSHWNPDVSSADKATDKITEALMDWCVVVS
ARDIETHYDFFLVFVALDSQEDKIIKEIQGYQAIQMPACGLAAPKDVAQP
I*
Sequence BS14544.pep has no blast hits.